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CHTOP [nucleoplasm]
Stable Identifier
R-HSA-8849147
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
nucleoplasm
Synonyms
Chromatin target of PRMT1 protein, CHTOP_HUMAN
Locations in the PathwayBrowser
Expand all
Gene expression (Transcription) (Homo sapiens)
RNA Polymerase II Transcription (Homo sapiens)
RNA Polymerase II Transcription Termination (Homo sapiens)
Cleavage of mRNA at the 3'-end (Homo sapiens)
3' end cleaved, ligated exon containing complex [nucleoplasm] (Homo sapiens)
TREX (DDX39B:ATP) [nucleoplasm] (Homo sapiens)
CHTOP [nucleoplasm] (Homo sapiens)
Spliced mRNA:CBC:EJC:TREX [nucleoplasm] (Homo sapiens)
TREX (DDX39B:ATP) [nucleoplasm] (Homo sapiens)
CHTOP [nucleoplasm] (Homo sapiens)
Metabolism of RNA (Homo sapiens)
Processing of Capped Intron-Containing Pre-mRNA (Homo sapiens)
Transport of Mature Transcript to Cytoplasm (Homo sapiens)
Transport of Mature mRNA derived from an Intron-Containing Transcript (Homo sapiens)
Docking of the TAP:EJC Complex with the NPC (Homo sapiens)
CHTOP [nucleoplasm] (Homo sapiens)
NXF1,2:NXT1::polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Homo sapiens)
capped mRNA:CBC:EJC:TREX (minus DDX39B) [nucleoplasm] (Homo sapiens)
TREX (minus DDX39B) [nucleoplasm] (Homo sapiens)
CHTOP [nucleoplasm] (Homo sapiens)
NXF1:NXT1 (TAP:p15) binds capped mRNA:CBC:EJC:TREX (minus DDX39B) (Homo sapiens)
NXF1,2:NXT1::polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Homo sapiens)
capped mRNA:CBC:EJC:TREX (minus DDX39B) [nucleoplasm] (Homo sapiens)
TREX (minus DDX39B) [nucleoplasm] (Homo sapiens)
CHTOP [nucleoplasm] (Homo sapiens)
polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Homo sapiens)
TREX (DDX39B:ATP) [nucleoplasm] (Homo sapiens)
CHTOP [nucleoplasm] (Homo sapiens)
mRNA 3'-end processing (Homo sapiens)
Cleavage of mRNA at the 3'-end (Homo sapiens)
3' end cleaved, ligated exon containing complex [nucleoplasm] (Homo sapiens)
TREX (DDX39B:ATP) [nucleoplasm] (Homo sapiens)
CHTOP [nucleoplasm] (Homo sapiens)
Spliced mRNA:CBC:EJC:TREX [nucleoplasm] (Homo sapiens)
TREX (DDX39B:ATP) [nucleoplasm] (Homo sapiens)
CHTOP [nucleoplasm] (Homo sapiens)
TREX complex binds spliced, capped mRNA:CBC:EJC cotranscriptionally (Homo sapiens)
CHTOP [nucleoplasm] (Homo sapiens)
Spliced mRNA:CBC:EJC:TREX [nucleoplasm] (Homo sapiens)
TREX (DDX39B:ATP) [nucleoplasm] (Homo sapiens)
CHTOP [nucleoplasm] (Homo sapiens)
mRNA polyadenylation (Homo sapiens)
3' end cleaved, ligated exon containing complex [nucleoplasm] (Homo sapiens)
TREX (DDX39B:ATP) [nucleoplasm] (Homo sapiens)
CHTOP [nucleoplasm] (Homo sapiens)
polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Homo sapiens)
TREX (DDX39B:ATP) [nucleoplasm] (Homo sapiens)
CHTOP [nucleoplasm] (Homo sapiens)
External Reference Information
External Reference
UniProt:Q9Y3Y2 CHTOP
Gene Names
CHTOP, C1orf77, FOP, HT031, PP7704
Chain
initiator methionine:1, chain:2-248
Reference Genes
BioGPS Gene:26097 CHTOP
COSMIC (genes):CHTOP CHTOP
CTD Gene:26097 CHTOP
dbSNP Gene:26097 CHTOP
ENSEMBL:ENSG00000160679.13 CHTOP
HGNC:24511 CHTOP
KEGG Gene (Homo sapiens):26097 CHTOP
Monarch:26097 CHTOP
NCBI Gene:26097 CHTOP
OMIM:614206 CHTOP
UCSC:Q9Y3Y2 CHTOP
Reference Transcript
RefSeq:NM_001317077.1 CHTOP
RefSeq:NM_001206612.1 CHTOP
RefSeq:NM_001244664.1 CHTOP
RefSeq:NM_015607.3 CHTOP
Other Identifiers
11720299_s_at
11754759_a_at
11758829_s_at
16671166
202559_PM_x_at
202559_x_at
202560_PM_s_at
202560_s_at
209927_PM_s_at
209927_s_at
2359735
2359737
2359738
2359739
2359740
2359741
2359742
2359745
2359750
2359752
2359755
2359756
2359757
26097
33403_at
4043393
4043394
4043395
4043396
4043397
4043398
4043399
7905589
A_14_P134907
A_23_P138253
A_23_P201726
A_24_P265539
GE61596
GE79013
GO:0000346
GO:0001701
GO:0003677
GO:0003723
GO:0003729
GO:0005515
GO:0005634
GO:0005654
GO:0005730
GO:0006406
GO:0006913
GO:0008284
GO:0008327
GO:0016607
GO:0031062
GO:0032781
GO:0036211
GO:0036464
GO:0043226
GO:0048856
GO:0051028
GO:0051096
HMNXSV003016201
ILMN_1736234
PH_hs_0016120
TC01001259.hg
g12005923_3p_a_at
g7661589_3p_a_at
p33740
Participates
as an input of
TREX complex binds spliced, capped mRNA:CBC:EJC cotranscriptionally (Homo sapiens)
as a component of
TREX (DDX39B:ATP) [nucleoplasm] (Homo sapiens)
TREX (minus DDX39B) [nucleoplasm] (Homo sapiens)
as an output of
Docking of the TAP:EJC Complex with the NPC (Homo sapiens)
Inferred To
Chtop [nucleoplasm]
(Mus musculus)
Chtop [nucleoplasm]
(Rattus norvegicus)
Chtopl1 [nucleoplasm]
(Rattus norvegicus)
CHTOP [nucleoplasm]
(Bos taurus)
CHTOP [nucleoplasm]
(Canis familiaris)
CHTOP [nucleoplasm]
(Schizosaccharomyces pombe)
CHTOP [nucleoplasm]
(Sus scrofa)
Ghost homologue of CHTOP [nucleoplasm]
(Caenorhabditis elegans)
Ghost homologue of CHTOP [nucleoplasm]
(Drosophila melanogaster)
Ghost homologue of CHTOP [nucleoplasm]
(Gallus gallus)
Ghost homologue of CHTOP [nucleoplasm]
(Xenopus tropicalis)
Homologues of CHTOP [nucleoplasm]
(Rattus norvegicus)
Homologues of CHTOP [nucleoplasm]
(Schizosaccharomyces pombe)
zgc:55292 [nucleoplasm]
(Danio rerio)
Cross References
RefSeq
NP_001304006.1
,
NP_056422.2
,
NP_001231593.1
,
NP_001193541.1
OpenTargets
ENSG00000160679
HPA
ENSG00000160679-CHTOP
GeneCards
Q9Y3Y2
Ensembl
ENSG00000160679
,
ENST00000368690
,
ENSP00000385228
,
ENST00000403433
,
ENSP00000357679
,
ENSP00000357683
,
ENST00000368694
PRO
Q9Y3Y2
Pharos - Targets
Q9Y3Y2
Interactors (12)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:Q13838 DDX39B
2
DDX39B [cytosol]
(R-HSA-9715154)
DDX39B [nucleoplasm]
(R-HSA-8849139)
0.782
7
UniProt:P84090 ERH
0.675
4
UniProt:Q9UBU9 NXF1
2
NXF1 [cytosol]
(R-HSA-156481)
NXF1 [nucleoplasm]
(R-HSA-111690)
0.653
9
UniProt:P78362 SRPK2
1
SRPK2 [cytosol]
(R-HSA-9729332)
0.59
2
UniProt:Q86V81 ALYREF
2
ALYREF [nucleoplasm]
(R-HSA-156649)
ALYREF [cytosol]
(R-HSA-158482)
0.558
8
UniProt:Q5VWX1 KHDRBS2
2
KHDRBS2 [nucleoplasm]
(R-HSA-8849028)
p-Y-KHDRBS2 [nucleoplasm]
(R-HSA-8849031)
0.556
3
UniProt:Q16637 SMN1
2
SMN1 [nucleoplasm]
(R-HSA-191892)
SMN1 [cytosol]
(R-HSA-191839)
0.556
3
UniProt:Q96SB4 SRPK1
1
SRPK1 [cytosol]
(R-HSA-9729349)
0.527
2
UniProt:Q9UPE1 SRPK3
0.527
2
UniProt:Q9UKK6 NXT1
2
NXT1 [nucleoplasm]
(R-HSA-8849151)
NXT1 [cytosol]
(R-HSA-8849122)
0.499
4
UniProt:Q13769 THOC5
3
p-Y-THOC5 [cytosol]
(R-HSA-9682738)
THOC5 [cytosol]
(R-HSA-9682751)
THOC5 [nucleoplasm]
(R-HSA-8849111)
0.462
4
UniProt:Q96FV9 THOC1
1
THOC1 [nucleoplasm]
(R-HSA-8849130)
0.462
4
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