There will be a maintenance on OICR IT systems starting Friday Dec 15 at 6PM EST until midnight Sunday Dec 17; Reactome will be affected by this downtime

Service under maintenance from Friday Dec 15 at 6PM EST until midnight Sunday Dec 17

 

Reactome provides open-source and open-data. We have continuously supported the major open-data standards, including BioPAX, PSI-MITAB, SBML and SBGN export formats. The Reactome data and source code continues to be publicly accessible under the terms of a Creative Commons Attribution 3.0 Unported License.

Graph Database

For more information on the installation of the Reactome Graph Database, please refer to the Get Started section of the Graph Database documentation in the Developer Guide.

Services and GitHub Repository

Identifier mapping files

Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway, all levels of the pathway hierarchy or database identifier to all reactions. Read more about the format.

Physical Entity (PE) Identifier mapping files

Mapping files link the source database identifier to the lowest level pathway diagram or subset of the pathway. Read more about the format.

Other Mappings

Pathways

  • Pathway Diagrams and Illustrations
    • Human pathway diagrams: PDF or PNG
    • Human Pathway Illustrations: SVG

Reactome External Identifiers

Protein-Protein Interactions derived from Reactome pathways

Specialized data formats

Functional interactions (FIs) derived from Reactome, and other pathway and interaction databases

For details about FIs, please see Wu G, Feng X, Stein L. To use these FI networks, please try our ReactomeFIViz Cytoscape app.

MySQL dumps of Reactome databases

Curation Software

The Curator tool is meant for use by curators to annotate biological pathways based on the Reactome schema. Please note that this tool will only work with a database using our internal database format; the database available from this web page will not work with them.

Reactome textbook of biological pathways and processes

Note: RTF files may be very large, but conversion to PDF or Word generates a file that is much smaller with no loss of information