The following table contains the known resources that have integrated Reactome by using the Analysis Service, the Graph Database or any of our widgets (diagram or pathways overview). If your resource is using our services, widgets or content and it is not in the list, please This email address is being protected from spambots. You need JavaScript enabled to view it. and we will add it.

The BLUEPRINT consortium has been formed with the aim to further the understanding of how genes are activated or repressed in both healthy and diseased human cells.

Analysis Service
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Graph Database

BLUEPRINT

Contains information for a large majority of all human protein-coding genes regarding the expression and localization of the corresponding proteins based on both RNA and protein data.

Analysis Service
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Graph Database

The Human Protein Atlas

PRoteomics IDEntifications (PRIDE) database is a centralized, standards compliant, public data repository for proteomics data, including protein and peptide identifications, post-translational modifications and supporting spectral evidence.

Analysis Service
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PRIDE

Integrative LINCS is an integrative web platform for analysis of LINCS data and signatures.The BD2K-LINCS Data Coordination and Integration Center is part of the Big Data to Knowledge (BD2K) NIH initiative.

Analysis Service
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Graph Database

iLINCS

The COPa Knowledgebase (COPaKB) has been created as a unique resource to facilitate the discovery of novel biological insights from proteomic datasets. COPaKB was developed under the NHLBI Proteomics Centers Program (2010-2015) and is continuously supported through the NIGMS BD2K Centers Program (2014-2018).

Analysis Service
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COPaKB

For biomedical researchers who need to identify a biological target for a new therapy, Open Targets is a public-private initiative to generate evidence on the validity of therapeutic targets based on genome-scale experiments and analysis.

Analysis Service
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Open Targets

Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on ‘small’ chemical compounds. The term ‘molecular entity’ refers to any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer, etc., identifiable as a separately distinguishable entity.

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ChEBI

PINT, the Proteomics INTegrator, is an online experiment repository for final results coming from different qualitative and/or quantitative proteomics assays. PINT is a new comprehensive system to store, visualize, and analyze data for proteomics results obtained under different experimental conditions.

Analysis Service
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PINT

Integrated Proteomics Applications provides a comprehensive proteomic data analysis solution, the Integrated Proteomics Pipeline (IP2), which allows researchers to identify, quantify, and functionally analyze all of the proteins in a biological sample on one, easy to use interface.

Analysis Service
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Graph Database

IPA

Tabloid Proteome is a database of protein association network generated using publicly available mass spectrometry based experiments in PRIDE. These associations represent a broad range of biological associations between pairs of proteins that goes well beyond mere binary protein interactions.

Analysis Service
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Graph Database

Tabloid Proteome

The Complex Portal is a manually curated, encyclopaedic resource of macromolecular complexes from a number of key model organisms. The majority of complexes are made up of proteins but may also include nucleic acids or small molecules.

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Graph Database

Complex Portal