Reactome | Me3K28-HIST2H3A [nucleoplasm]

Me3K28-HIST2H3A [nucleoplasm]

Stable Identifier

R-HSA-212253

Type

Protein [EntityWithAccessionedSequence]

Species

Homo sapiens

Compartment

nucleoplasm

Synonyms

Histone H3.2 with trimethylated lysine 27

Locations in the PathwayBrowser

Expand all

Gene expression (Transcription) (Homo sapiens)

- Epigenetic regulation of gene expression (Homo sapiens)
  - PRC2 methylates histones and DNA (Homo sapiens)
    - DNMT1,3A,3B:PRC2 methylates cytosine and histone H3 (Homo sapiens)
      - DNMT1,3A,3B:PRC2:Chromatin (5-mC, H3K27me3) [nucleoplasm] (Homo sapiens)
        
        PRC2:Chromatin (5-methylcytosine, H3K27me3) [nucleoplasm] (Homo sapiens)
        
        Chromatin with hemimethylC, H3K27me3 [nucleoplasm] (Homo sapiens)
        
        Nucleosome with H3K27me3 [nucleoplasm] (Homo sapiens)
        
        Histone H3 (H3K27me3) [nucleoplasm] (Homo sapiens)
        
        Me3K28-HIST2H3A [nucleoplasm] (Homo sapiens)
    - PRC2 trimethylates histone H3 at lysine-27 (Homo sapiens)
      - PRC2:Chromatin (H3K27me3) [nucleoplasm] (Homo sapiens)
        
        Chromatin with trimethylated H3K27 [nucleoplasm] (Homo sapiens)
        
        Nucleosome with H3K27me3 [nucleoplasm] (Homo sapiens)
        
        Histone H3 (H3K27me3) [nucleoplasm] (Homo sapiens)
        
        Me3K28-HIST2H3A [nucleoplasm] (Homo sapiens)

External Reference Information

External Reference

UniProt:Q71DI3 H3C15

Gene Names

H3C15, HIST2H3A, H3C14, H3F2, H3FM, HIST2H3C, H3C13, HIST2H3D

Chain

chain:1-136

Reference Genes

BioGPS Gene:126961 H3C15

BioGPS Gene:333932 H3C15

BioGPS Gene:653604 H3C15

CTD Gene:126961 H3C15

CTD Gene:333932 H3C15

CTD Gene:653604 H3C15

dbSNP Gene:126961 H3C15

dbSNP Gene:333932 H3C15

dbSNP Gene:653604 H3C15

ENSEMBL:ENSG00000183598 HIST2H3D

ENSEMBL:ENSG00000183598.4 H3C15

ENSEMBL:ENSG00000203811 HIST2H3C

ENSEMBL:ENSG00000203811.2 H3C15

ENSEMBL:ENSG00000203852 HIST2H3A

ENSEMBL:ENSG00000203852.4 H3C15

HGNC:20503 H3C15

HGNC:20505 H3C15

HGNC:25311 H3C15

KEGG Gene (Homo sapiens):126961 H3C15

KEGG Gene (Homo sapiens):333932 H3C15

KEGG Gene (Homo sapiens):653604 H3C15

Monarch:126961 H3C15

Monarch:333932 H3C15

Monarch:653604 H3C15

NCBI Gene:126961 H3C15

NCBI Gene:333932 H3C15

NCBI Gene:653604 H3C15

OMIM:142780 H3C15

UCSC:Q71DI3 H3C15

Reference Transcript

Other Identifiers

11742410_s_at

126961

16670387

16692614

16692616

2357939

2357940

2434047

2434082

2434083

333932

653604

7905085

7919589

7919612

7919614

ADDON002755.hg

ADDON002789.hg

A_23_P115375

A_24_P324465

A_24_P45651

A_33_P3257678

GE79559

GO:0000785

GO:0000786

GO:0003677

GO:0005198

GO:0005515

GO:0005576

GO:0005615

GO:0005634

GO:0005654

GO:0005694

GO:0006325

GO:0006334

GO:0030527

GO:0043226

GO:0046982

GO:0065003

GO:0070062

HMNXSV003021896

HMNXSV003029395

ILMN_1664706

ILMN_1666179

PH_hs_0030802

PH_hs_0034534

TC01001175.hg

TC01003173.hg

TC01003188.hg

TC01003189.hg

Participates

as a candidate of

Me3K28-histone H3 [nucleoplasm] (Homo sapiens)

as a member of

Histone H3 (H3K27me3) [nucleoplasm] (Homo sapiens)

Other forms of this molecule

2xAcK-HIST2H3A [nucleoplasm]

Me2aR27-HIST2H3A [nucleoplasm]

Me2aR18-HIST2H3A [nucleoplasm]

Me2sR9-HIST2H3A [nucleoplasm]

Me2sR3-HIST2H3A [nucleoplasm]

AcK9,14-p-S10-HIST2H3A [nucleoplasm]

AcK14,18,79-p-S10-HIST2H3A [nucleoplasm]

AcK9,14,18-p-S10,T11-HIST2H3A [nucleoplasm]

AcK14,18-p-S10,T11-HIST2H3A [nucleoplasm]

AcK9,14,18,79-p-S10,T11-HIST2H3A [nucleoplasm]

AcK14,18-p-S10-HIST2H3A [nucleoplasm]

AcK14,18,79-p-T11-HIST2H3A [nucleoplasm]

AcK14,18-p-T11-HIST2H3A [nucleoplasm]

AcK14,18,79-p-S10,T11-HIST2H3A [nucleoplasm]

Me2K28-HIST2H3A [nucleoplasm]

MeK37-HIST2H3A [nucleoplasm]

MeK80-HIST2H3A [nucleoplasm]

Me3K80-HIST2H3A [nucleoplasm]

Me2K80-HIST2H3A [nucleoplasm]

Me3K37-HIST2H3A [nucleoplasm]

Me2K37-HIST2H3A [nucleoplasm]

MeK-HIST2H3A [nucleoplasm]

MeK28-HIST2H3A [nucleoplasm]

MeK10-HIST2H3A [cytosol]

HIST2H3A [cytosol]

Me2aR3-HIST2H3A [nucleoplasm]

MeK5-HIST2H3A [nucleoplasm]

Cit27-HIST2H3A [nucleoplasm]

Cit9-HIST2H3A [nucleoplasm]

Cit18-HIST2H3A [nucleoplasm]

MeR18-HIST2H3A [nucleoplasm]

MeR3-HIST2H3A [nucleoplasm]

MeR27-HIST2H3A [nucleoplasm]

MeR9-HIST2H3A [nucleoplasm]

HIST2H3A [extracellular region]

AcK24-HIST2H3A [nucleoplasm]

Ack15-HIST2H3A [nucleoplasm]

AcK19-HIST2H3A [nucleoplasm]

AcK5-HIST2H3A [nucleoplasm]

p-T12-HIST2H3A [nucleoplasm]

p-T12,MeK-HIST2H3A [nucleoplasm]

p-T12, Me2K-10-HIST2H3A [nucleoplasm]

p-T12, Me3K-10-HIST2H3A [nucleoplasm]

Me3K10-HIST2H3A [nucleoplasm]

Ack10-HIST2H3A [nucleoplasm]

Me2K10-HIST2H3A [nucleoplasm]

Me2K5,Me2aR3-HIST2H3A [nucleoplasm]

Me3K5-HIST2H3A [nucleoplasm]

HIST2H3A [nucleoplasm]

Me2K5-HIST2H3A [nucleoplasm]

Inferred To

Me3K28-Hist1h3b [nucleoplasm] (Mus musculus)

His3:CG33845 [nucleoplasm] (Drosophila melanogaster)

Homologues of Me3K28-HIST2H3A [nucleoplasm] (Plasmodium falciparum)

Me3K28-HIST2H3A [nucleoplasm] (Bos taurus)

Me3K28-HIST2H3A [nucleoplasm] (Canis familiaris)

Me3K28-HIST2H3A [nucleoplasm] (Danio rerio)

Me3K28-HIST2H3A [nucleoplasm] (Plasmodium falciparum)

Me3K28-HIST2H3A [nucleoplasm] (Sus scrofa)

Me3K28-HIST2H3A [nucleoplasm] (Xenopus tropicalis)

H3-VII [nucleoplasm] (Gallus gallus)

Hist2h3c2 [nucleoplasm] (Rattus norvegicus)

Modified Residues

Name

N6,N6,N6-trimethyl-L-lysine at 28

Coordinate

PsiMod Name

N6,N6,N6-trimethyl-L-lysine [MOD:00083]

PsiMod Definition

A protein modification that effectively converts an L-lysine residue to N6,N6,N6-trimethyl-L-lysine.

Cross References

RefSeq

NP_001116847.1, NP_066403.2, NP_001005464.1

OpenTargets

ENSG00000203852

GeneCards

Q71DI3

HPA

ENSG00000183598-H3C13, ENSG00000203811-H3C14, ENSG00000203852-H3C15

Ensembl

ENSG00000183598, ENSG00000203852, ENSG00000203811, ENSP00000385479, ENST00000369158, ENSP00000333277, ENST00000331491, ENST00000403683, ENSP00000358154

PRO

Q71DI3

Pharos - Targets

Q71DI3

PDB

4MZF, 4MZG, 8AV6, 7JOA, 3R93, 5B0Z, 7BU9, 2IIJ, 6ACE, 6FML, 6Y5D, 3MO8, 5B40, 7PF5, 5CIU, 2X4W, 7PFT, 7UVA, 7TAN, 7PF0, 7U53, 6X59, 7XD0, 7PFX, 7PFE, 7JO9, 2X4X, 5B0Y, 7PFD, 7XCR, 6T79, 7U52, 7JZV, 8ATF, 6X5A, 7PF2, 4OUC, 7UV9, 7PFF, 2X4Y, 7PEV, 7PEU, 6T7A, 3AV1, 7PEW, 7U50, 4MZH, 7PF3, 6XJD, 7PFA, 6T7B, 7PFV, 6T7C, 3QO2, 6T7D, 7U51, 7PF4, 7PEX, 3DB3, 7PFC, 7PFU, 6Y5E, 7PET, 7PF6, 7XCT, 5BO0, 7PEZ, 7PFW, 7PEY, 5VAC, 7BQZ

Interactors (9)

Accession	#Entities	Entities	Confidence Score	Evidence (IntAct)
UniProt:P62805 H4C1	17	polySUMO3-HIST1H4 [nucleoplasm] (R-HSA-4570531) monoSUMO1-HIST1H4 [nucleoplasm] (R-HSA-4570518) 4xAcK-HIST1H4A [nucleoplasm] (R-HSA-427390) AcK5,12-HIST1H4A [nucleoplasm] (R-HSA-212078) AcK13-HIST1H4 [nucleoplasm] (R-HSA-4568744) Me2aR4-HIST1H4 [nucleoplasm] (R-HSA-5229015) Me2sR4-HIST1H4 [nucleoplasm] (R-HSA-4754243) MeR4-HIST1H4 [nucleoplasm] (R-HSA-4754240) Me3K21-HIST1H4 [nucleoplasm] (R-HSA-5651656) HIST1H4A [extracellular region] (R-HSA-977569) AcK17-HIST1H4 [nucleoplasm] (R-HSA-427469) AcK6-HIST1H4 [nucleoplasm] (R-HSA-4568748) AcK9-HIST1H4 [nucleoplasm] (R-HSA-4568758) MeK21-HIST1H4 [nucleoplasm] (R-HSA-5423110) AcK-HIST1H4 [nucleoplasm] (R-HSA-3451124) HIST1H4 [nucleoplasm] (R-HSA-181902) Me2K21-HIST1H4 [nucleoplasm] (R-HSA-5651652)	0.704	4
UniProt:Q9Y294 ASF1A	1	ASF1A [nucleoplasm] (R-HSA-417169)	0.576	4
UniProt:P49736 MCM2	1	MCM2 [nucleoplasm] (R-HSA-68557)	0.576	5
UniProt:P14136 GFAP	3	p-GFAP [lysosomal membrane] (R-HSA-9626054) GFAP [lysosomal membrane] (R-HSA-9625195) GFAP [cytosol] (R-HSA-1253311)	0.556	3
UniProt:P19404 NDUFV2	1	NDUFV2 [mitochondrial inner membrane] (R-HSA-163939)	0.556	3
UniProt:Q96CV9 OPTN	5	OPTN [recycling endosome membrane] (R-HSA-8854141) p-S177-OPTN [nucleoplasm] (R-HSA-2562595) p-S177-OPTN [cytosol] (R-HSA-2562525) OPTN [Golgi membrane] (R-HSA-2161111) OPTN [cytosol] (R-HSA-9687907)	0.556	3
UniProt:P37840 SNCA	5	SNCA A30P [cytosol] (R-HSA-5658569) SNCA [extracellular region] (R-HSA-976954) Ub-SNCA [cytosol] (R-HSA-5660754) p-S129-SNCA [cytosol] (R-HSA-9836432) SNCA [cytosol] (R-HSA-5658500)	0.556	3
UniProt:P42858 HTT	1	HTT [nucleoplasm] (R-HSA-9023590)	0.556	18
UniProt:P29474 NOS3	7	2xPalmC-MyrG-NOS3 [endocytic vesicle membrane] (R-HSA-535007) 2xPalmC-MyrG-p-S1177-NOS3 [plasma membrane] (R-HSA-202139) NOS3 [cytosol] (R-HSA-202114) MyrG-NOS3 [Golgi membrane] (R-HSA-534995) 2xPalmC-MyrG-NOS3 [Golgi membrane] (R-HSA-203769) MyrG-NOS3 [cytosol] (R-HSA-203687) 2xPalmC-MyrG-NOS3 [plasma membrane] (R-HSA-534993)	0.556	3

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