Use this tool to search the Reactome static web pages (Documentation, news, etc).
21.
Diagram exporter
(Developers Guide)
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Introduction
In Reactome, pathway diagrams are stored using a custom format. Aimming to allow researchers ...
22.
Diagram GWT
(Developers Guide)
Reactome’s Diagram GWT widget is our original implementation of the diagram viewer in GWT. It is meant to be reused by third party resources in order to display Reactome Pathway Diagrams directly in their ...
23.
Diagram JS
(Developers Guide)
... by third party resources in order to display Reactome Pathway Diagrams directly in their web pages and enable users to interact with them.
Reusing Reactome's Diagram Widget?
To reuse our view ...
24.
Diseases
(User Guide)
Reactome can annotate and display pathways associated with disease. Reactome disease annotations include cancer, metabolic and immune disease as well as infectious diseases, among others. Where possible, ...
25.
Documentation
(User Guide)
Reactome is documented for users at all levels of sophistication. The online User’s Guide begins with entry-level information that describes what our resource contains and how its pathways are organized. ...
26.
Downloads
(Download)
... Service provides outside users with direct access to pathway data in Reactome.
Analysis Service: The Reactome Pathway Analysis Tools are also available for integration into third party websites.
GitHub ...
(Uncategorised)
The Enhanced High Level Diagrams (EHLD) project aims to improve the graphical representation of higher-level pathways in the Reactome events hierarchy, e.g., “signal transduction”, “apoptosis”, or “metabolism” ...
28.
Events
(Community)
... CSHL, NY 12-17 March
Interactions and Pathways, EMBL-EBI, Cambridge, UK, 13 March
Biocuration 2018, Fudan University, Shanghai, China, 04-08 April
GO Consortium Meeting, NYUMC, New York, USA, 12-14 ...
(Community)
Become a Reactome contributor! You will be credited with authorship or reviewership for all of your contributions. Each pathway is associated with a DOI and can be cited as a publication. You can quickly ...
(Community)
What is involved in reviewing a Reactome pathway module?
Reviewing a pathway module is similar to reviewing a review article and involves evaluating both a pathway report in text format and a corresponding ...
31.
Graph Database
(Developers Guide)
... forming a graph of biological knowledge. The Reactome Graph provides an intuitive way for data retrieval as well as interpretation and analysis of pathway knowledge.
Retrieving, and especially analysing ...
(PopUps and Modals)
The mapping files consist of a tab-separated table that indicates which external protein, gene or small molecule identifiers in the source database were mapped to Reactome pathway and reaction annotations. ...
(News)
Following up on the International Open Access week, we would like to remind our users that all our tools, including the analysis, are open access.
Pathway analysis methods have a broad range of applications ...
(News)
... For instance, expanding the pathways group reveals a set of methods that provide specific information about pathways such as the contained Events or the participating PhysicalEntities. ...
(News)
Textbook-like illustrations aim to improve the graphical representation of higher-level pathways in the Reactome events hierarchy, e.g., “signal transduction”, “apoptosis”, or “metabolism of proteins” ...
(News)
... have constructed the Reactome Functional Interaction (FI) network which, covers 60% of the total human protein-coding genes, and was created by extracting interactions from manually curated pathways and ...
(About)
... curated database of pathways. The layering in our logo highlights the transparency of Reactome’s nature while the rounded typography matches our openness.
Derived from a shape that exists in nature and ...
(About)
... Graph Database data dumps, and Pathway Illustrations (Enhanced High-Level Diagrams), Icon Library, Art and Branding Materials.
Finally, KEGG gene and pathway annotations, used to construct the Reactome ...
39.
Linking to us
(Docs)
... MSigDB, HGNC, NextProt, BioGPS, Pathway Commons, and Wikipathways.
Our goal with distributing different sets of files for each identifier type (i.e. protein (UniProt), gene (Ensembl and NCBI), small ...
(News)
... the integration of biological knowledge. Over 2,200 pathways from Reactome were integrated into the Wikidata repository. More publications from the Reactome Team can be found here. ...
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