Use this tool to search the Reactome static web pages (Documentation, news, etc).
(General website)
Unfortunately, this is not possible at this time.
(General)
At the moment we don’t have a way to filter the results by top level pathway, or diagram-level pathway or other criteria. This feature is on our radar to implement.
In the meantime, you can get a sense ...
(General website)
... documented here, and then added links to the Reactome pathways below a certain p value cutoff.
You could use that method to identify Reactome pathways that are related to a given KEGG pathway, and ...
(API and R)
Pathway analysis can be performed through our API, documented here.
(Spotlight)
Tagliazucchi L et al. 2023 in the March 2023 issue of ACS Infectious Diseases used the REACTOME overrepresentation and pathway topology analyses to identify Transport of small molecules, Cellular response ...
(News)
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Our PathwayBrowser now features advanced search capabilities powered by Solr to allow finding content throughout the whole knowledgebase. The user ...
(Uncategorised)
[December 1, 2023] In the chapter entitled “New Insights into Clinical Management for Sickle Cell Disease: Uncovering the Significant Pathways Affected by the Involvement of Sickle Cell Disease”, published ...
(Spotlight)
In the chapter entitled “New Insights into Clinical Management for Sickle Cell Disease: Uncovering the Significant Pathways Affected by the Involvement of Sickle Cell Disease”, published in Methods in ...
(News)
Pathways in Reactome are curated in a generic cell and are agnostic to tissue types. However, different cell types have different functional requirements and consequently the underlying pathway activities ...
(Spotlight)
In PLOS Computational Biology, Wieder et al. (2024) employ the Reactome database and PathIntegrate, a pathway-based multi-omics integration tool based on single-sample pathway analysis and machine learning, ...
31.
Pathway Diagrams
(Developers Guide)
The Reactome Pathway Diagram Viewer provides an intuitive means of viewing and interacting with pathway diagrams. Pathway diagrams represent the steps of a pathway as a series of interconnected molecular ...
(Developers Guide)
...
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Introduction
This document provides a set of guidelines for developers on how to properly render Reactome pathway diagrams. Pathway Diagrams represent pathways as a series of connected ...
(Uncategorised)
The pathway information files consist of tab-separated tables that provide information about Reactome pathway hierarchy:
The "Complete list of pathways" file maps the Reactome Stable identifier (ST_ID) ...
(Developers Guide)
The Pathways Overview is a genome-wide, hierarchical visualization of Reactome pathways in a space-filling graph. Each node represents a pathway, and the size of the node reflects the number of entities ...
(Developers Guide)
Reactome’s Fireworks GWT widget is our original implementation of the pathways overview in GWT. It is meant to be reused by third party resources in order to display Reactome pathways overview directly ...
(Developers Guide)
pre {
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Reactome's Fireworks JS widget is our pathways overview viewer in an ordinary JavaScript API. It is meant to be reused ...
(News)
As part of our continuous effort to provide visually attractive and more user-friendly access to our biological pathways, we are pleased to announce our new high level pathways overview visualisation ...
(News)
On June 2, 2021, Dr. Johannes Griss presented "A guide to multiomics pathway analysis" to a record audience of 572 participants as part of the EMBL-EBI webinar series. The seminar recording and training ...
(User Guide)
The Pathway Browser is the primary means of viewing and interacting with pathways in Reactome.
See our Youtube Video explaining navigating the Pathway Browser for more information.
The Pathway Browser ...
(News)
A new research article titled “The reactome pathway knowledgebase” has been published in the forthcoming 2020 NAR Database Issue. The paper describes annotating the molecular mechanisms of drug action, ...
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