Use this tool to search the Reactome static web pages (Documentation, news, etc).
(News)
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Our PathwayBrowser now features advanced search capabilities powered by Solr to allow finding content throughout the whole knowledgebase. The user ...
(News)
Pathways in Reactome are curated in a generic cell and are agnostic to tissue types. However, different cell types have different functional requirements and consequently the underlying pathway activities ...
23.
Pathway Diagrams
(Developers Guide)
The Reactome Pathway Diagram Viewer provides an intuitive means of viewing and interacting with pathway diagrams. Pathway diagrams represent the steps of a pathway as a series of interconnected molecular ...
(Developers Guide)
...
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Introduction
This document provides a set of guidelines for developers on how to properly render Reactome pathway diagrams. Pathway Diagrams represent pathways as a series of connected ...
(Uncategorised)
The pathway information files consist of tab-separated tables that provide information about Reactome pathway hierarchy:
The "Complete list of pathways" file maps the Reactome Stable identifier (ST_ID) ...
(Developers Guide)
The Pathways Overview is a genome-wide, hierarchical visualization of Reactome pathways in a space-filling graph. Each node represents a pathway, and the size of the node reflects the number of entities ...
(Developers Guide)
Reactome’s Fireworks GWT widget is our original implementation of the pathways overview in GWT. It is meant to be reused by third party resources in order to display Reactome pathways overview directly ...
(Developers Guide)
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Reactome's Fireworks JS widget is our pathways overview viewer in an ordinary JavaScript API. It is meant to be reused ...
(News)
As part of our continuous effort to provide visually attractive and more user-friendly access to our biological pathways, we are pleased to announce our new high level pathways overview visualisation ...
(News)
On June 2, 2021, Dr. Johannes Griss presented "A guide to multiomics pathway analysis" to a record audience of 572 participants as part of the EMBL-EBI webinar series. The seminar recording and training ...
(User Guide)
The Pathway Browser is the primary means of viewing and interacting with pathways in Reactome. It includes tools for analysing datasets and exploring pathways. These tools allow several types of analysis: ...
(News)
A new research article titled “The reactome pathway knowledgebase” has been published in the forthcoming 2020 NAR Database Issue. The paper describes annotating the molecular mechanisms of drug action, ...
(General)
We provide an endpoint to retrieve the full event hierarchy for a given species. For example, you can get human data with a token like the one below. Please replace “your_analysis_token” in the URL below ...
34.
Analysis Service
(Developers Guide)
... of the token produced during every analysis, it is possible to link back to the PathwayBrowser and browse the results overlaid on either the pathways overview or a selected pathway.
As mentioned afore, ...
35.
Analysis Tools
(User Guide)
Analysis Data
Analysis Gene Expression
Species Comparison
Tissue Distribution
Analysis Data
Click on the ‘Browse Pathways’ button on the Homepage. In the next page, click the ‘Analysis’ ...
36.
Can I visualize gene expression data (color nodes) according to gene expression level with Reactome?
(General)
... perform a standard gene set enrichment analysis, based only on the gene list. In the results overview, pathways will be greyed out if they are not significantly enriched. If a pathway is enriched, its ...
(News)
Reactome is pleased to announce a partnership with PharmGKB to curate pharmacokinetic / Drug ADME (absorption distribution metabolism excretion) pathways. Sharing knowledge and distributing curation ...
(News)
... is a freely available curated database of human biological pathways and reactions, which is updated on a regular basis. Release 68 features new and updated pathway and reaction annotations for 16 species, ...
(Docs)
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After all possible reactions have been inferred for the species, any human pathways that contain at least 1 inferred reaction will be inferred for the species as well.
These electronically inferred ...
40.
Content Service
(Developers Guide)
... SOAP/WSDL counterparts.
The API includes a set of methods classified in groups according to their functionality. For instance, expanding the pathways group reveals a set of methods that provide specific ...
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