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RBBP8 [nucleoplasm]
Stable Identifier
R-HSA-912399
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
nucleoplasm
Synonyms
RBBP8/CtIP, Retinoblastoma-binding protein 8, RBBP8_HUMAN
Locations in the PathwayBrowser
Expand all
Cell Cycle (Homo sapiens)
Meiosis (Homo sapiens)
Meiotic recombination (Homo sapiens)
MRN:CtIP endonucleolytically cleaves single-strand DNA 3' to SPO11 (Homo sapiens)
MRN:CtIP [nucleoplasm] (Homo sapiens)
RBBP8 [nucleoplasm] (Homo sapiens)
MRN:CtIP exonucleolytically hydrolyzes DNA 3' to SPO11 and SPO11:double-strand break dissociates to SPO11:oligonucleotide and resected 5' end (Homo sapiens)
MRN:CtIP [nucleoplasm] (Homo sapiens)
RBBP8 [nucleoplasm] (Homo sapiens)
DNA Repair (Homo sapiens)
DNA Double-Strand Break Repair (Homo sapiens)
Homology Directed Repair (Homo sapiens)
HDR through Homologous Recombination (HRR) or Single Strand Annealing (SSA) (Homo sapiens)
Processing of DNA double-strand break ends (Homo sapiens)
CDK2 phosphorylates RBBP8 (Homo sapiens)
DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:CCNA:p-T160-CDK2:RBBP8 [nucleoplasm] (Homo sapiens)
RBBP8 homotetramer [nucleoplasm] (Homo sapiens)
RBBP8 [nucleoplasm] (Homo sapiens)
MRN complex binds CDK2 and RBBP8 (Homo sapiens)
DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:CCNA:p-T160-CDK2:RBBP8 [nucleoplasm] (Homo sapiens)
RBBP8 homotetramer [nucleoplasm] (Homo sapiens)
RBBP8 [nucleoplasm] (Homo sapiens)
RBBP8 homotetramer [nucleoplasm] (Homo sapiens)
RBBP8 [nucleoplasm] (Homo sapiens)
SIRT6 deacetylates RBBP8 (Homo sapiens)
RBBP8 homotetramer [nucleoplasm] (Homo sapiens)
RBBP8 [nucleoplasm] (Homo sapiens)
HDR through MMEJ (alt-NHEJ) (Homo sapiens)
FEN1 cleaves displaced ssDNA flaps during MMEJ (Homo sapiens)
Extended microhomologous 3'-ssDNA overhangs-DSB:MRN:RBBP8 [nucleoplasm] (Homo sapiens)
RBBP8 homotetramer [nucleoplasm] (Homo sapiens)
RBBP8 [nucleoplasm] (Homo sapiens)
Extended microhomologous 3'-ssDNA overhangs-flap-DSB:MRN:RBBP8:FEN1 [nucleoplasm] (Homo sapiens)
Extended microhomologous 3'-ssDNA overhangs-flap-DSB:MRN:RBBP8 [nucleoplasm] (Homo sapiens)
RBBP8 homotetramer [nucleoplasm] (Homo sapiens)
RBBP8 [nucleoplasm] (Homo sapiens)
LIG3 ligates remaining SSBs in MMEJ (Homo sapiens)
Extended microhomologous 3'-ssDNA overhangs-DSB:MRN:RBBP8:LIG3:XRCC1 [nucleoplasm] (Homo sapiens)
Extended microhomologous 3'-ssDNA overhangs-DSB:MRN:RBBP8 [nucleoplasm] (Homo sapiens)
RBBP8 homotetramer [nucleoplasm] (Homo sapiens)
RBBP8 [nucleoplasm] (Homo sapiens)
RBBP8 homotetramer [nucleoplasm] (Homo sapiens)
RBBP8 [nucleoplasm] (Homo sapiens)
MRN and RBBP8 resect DNA DSBs in MMEJ (Homo sapiens)
DNA DSB:MRN:RBBP8 [nucleoplasm] (Homo sapiens)
RBBP8 homotetramer [nucleoplasm] (Homo sapiens)
RBBP8 [nucleoplasm] (Homo sapiens)
Microhomologous 3'-ssDNA overhangs-DSB:MRN:RBBP8 [nucleoplasm] (Homo sapiens)
RBBP8 homotetramer [nucleoplasm] (Homo sapiens)
RBBP8 [nucleoplasm] (Homo sapiens)
MRN complex binds RBBP8 (Homo sapiens)
DNA DSB:MRN:RBBP8 [nucleoplasm] (Homo sapiens)
RBBP8 homotetramer [nucleoplasm] (Homo sapiens)
RBBP8 [nucleoplasm] (Homo sapiens)
RBBP8 homotetramer [nucleoplasm] (Homo sapiens)
RBBP8 [nucleoplasm] (Homo sapiens)
MRN recruits LIG3:XRCC1 to MMEJ sites (Homo sapiens)
Extended microhomologous 3'-ssDNA overhangs-DSB:MRN:RBBP8 [nucleoplasm] (Homo sapiens)
RBBP8 homotetramer [nucleoplasm] (Homo sapiens)
RBBP8 [nucleoplasm] (Homo sapiens)
Extended microhomologous 3'-ssDNA overhangs-DSB:MRN:RBBP8:LIG3:XRCC1 [nucleoplasm] (Homo sapiens)
Extended microhomologous 3'-ssDNA overhangs-DSB:MRN:RBBP8 [nucleoplasm] (Homo sapiens)
RBBP8 homotetramer [nucleoplasm] (Homo sapiens)
RBBP8 [nucleoplasm] (Homo sapiens)
PARP1 or PARP2, FEN1 and POLQ are recruited to MMEJ site (Homo sapiens)
Annealed microhomologous 3'-ssDNA overhangs-DSB:MRN:RBBP8:PARP1,PARP2:FEN1:POLQ [nucleoplasm] (Homo sapiens)
Annealed microhomologous 3'-ssDNA overhangs-DSB:MRN:RBBP8 [nucleoplasm] (Homo sapiens)
RBBP8 homotetramer [nucleoplasm] (Homo sapiens)
RBBP8 [nucleoplasm] (Homo sapiens)
Microhomologous 3'-ssDNA overhangs-DSB:MRN:RBBP8 [nucleoplasm] (Homo sapiens)
RBBP8 homotetramer [nucleoplasm] (Homo sapiens)
RBBP8 [nucleoplasm] (Homo sapiens)
PARP1,PARP2 dimers bound to MMEJ sites autoPARylate (Homo sapiens)
Extended microhomologous 3'-ssDNA overhangs-flap-DSB:MRN:RBBP8:FEN1 [nucleoplasm] (Homo sapiens)
Extended microhomologous 3'-ssDNA overhangs-flap-DSB:MRN:RBBP8 [nucleoplasm] (Homo sapiens)
RBBP8 homotetramer [nucleoplasm] (Homo sapiens)
RBBP8 [nucleoplasm] (Homo sapiens)
Extended microhomologous 3'-ssDNA overhangs-flap-DSB:MRN:RBBP8:PARP1,PARP2:FEN1:POLQ [nucleoplasm] (Homo sapiens)
Extended microhomologous 3'-ssDNA overhangs-flap-DSB:MRN:RBBP8 [nucleoplasm] (Homo sapiens)
RBBP8 homotetramer [nucleoplasm] (Homo sapiens)
RBBP8 [nucleoplasm] (Homo sapiens)
POLQ extends annealed 3'-ssDNA overhangs in MMEJ (Homo sapiens)
Annealed microhomologous 3'-ssDNA overhangs-DSB:MRN:RBBP8:PARP1,PARP2:FEN1:POLQ [nucleoplasm] (Homo sapiens)
Annealed microhomologous 3'-ssDNA overhangs-DSB:MRN:RBBP8 [nucleoplasm] (Homo sapiens)
RBBP8 homotetramer [nucleoplasm] (Homo sapiens)
RBBP8 [nucleoplasm] (Homo sapiens)
Extended microhomologous 3'-ssDNA overhangs-flap-DSB:MRN:RBBP8:PARP1,PARP2:FEN1:POLQ [nucleoplasm] (Homo sapiens)
Extended microhomologous 3'-ssDNA overhangs-flap-DSB:MRN:RBBP8 [nucleoplasm] (Homo sapiens)
RBBP8 homotetramer [nucleoplasm] (Homo sapiens)
RBBP8 [nucleoplasm] (Homo sapiens)
Gene expression (Transcription) (Homo sapiens)
RNA Polymerase II Transcription (Homo sapiens)
Generic Transcription Pathway (Homo sapiens)
Transcriptional Regulation by E2F6 (Homo sapiens)
RBBP8 gene expression is inhibited by E2F6 (Homo sapiens)
RBBP8 [nucleoplasm] (Homo sapiens)
Reproduction (Homo sapiens)
Meiosis (Homo sapiens)
Meiotic recombination (Homo sapiens)
MRN:CtIP endonucleolytically cleaves single-strand DNA 3' to SPO11 (Homo sapiens)
MRN:CtIP [nucleoplasm] (Homo sapiens)
RBBP8 [nucleoplasm] (Homo sapiens)
MRN:CtIP exonucleolytically hydrolyzes DNA 3' to SPO11 and SPO11:double-strand break dissociates to SPO11:oligonucleotide and resected 5' end (Homo sapiens)
MRN:CtIP [nucleoplasm] (Homo sapiens)
RBBP8 [nucleoplasm] (Homo sapiens)
External Reference Information
External Reference
UniProt:Q99708 RBBP8
Gene Names
RBBP8, CTIP
Chain
chain:1-897
Reference Genes
BioGPS Gene:5932 RBBP8
COSMIC (genes):RBBP8 RBBP8
CTD Gene:5932 RBBP8
dbSNP Gene:5932 RBBP8
ENSEMBL:ENSG00000101773 RBBP8
ENSEMBL_homo_sapiens_GENE:ENSG00000101773.19 RBBP8
HGNC:9891 RBBP8
KEGG Gene (Homo sapiens):5932 RBBP8
Monarch:5932 RBBP8
NCBI Gene:5932 RBBP8
OMIM:604124 RBBP8
UCSC:Q99708 RBBP8
Reference Transcript
RefSeq:NM_002894.2 RBBP8
RefSeq:XM_006722520.2 RBBP8
RefSeq:NM_203291.1 RBBP8
RefSeq:XM_006722521.2 RBBP8
RefSeq:NM_203292.1 RBBP8
RefSeq:XM_011526132.2 RBBP8
RefSeq:XM_006722519.2 RBBP8
Other Identifiers
11727547_s_at
16851397
203344_PM_s_at
203344_s_at
35227_at
3781451
3781452
3781453
3781454
3781455
3781456
3781457
3781458
3781461
3781462
3781463
3781465
3781466
3781470
3781474
3781476
3781477
3781479
3781480
3781482
3781483
3781484
3781485
3781486
3781487
3781489
3781490
3781491
3781494
3781496
3781498
3781499
3781502
3781503
3781504
3781505
5932
8020468
A_14_P115784
A_23_P252371
A_33_P3240702
GE59378
GO:0000014
GO:0000082
GO:0000278
GO:0000724
GO:0001835
GO:0003677
GO:0003684
GO:0003714
GO:0003824
GO:0004518
GO:0004519
GO:0005515
GO:0005634
GO:0005654
GO:0005694
GO:0006260
GO:0006281
GO:0006310
GO:0006351
GO:0006355
GO:0006357
GO:0006974
GO:0007049
GO:0010792
GO:0016787
GO:0017053
GO:0022414
GO:0023052
GO:0035825
GO:0042802
GO:0043226
GO:0043231
GO:0044818
GO:0045892
GO:0046872
GO:0048856
GO:0051301
GO:0051321
GO:0061629
GO:0070533
GO:0110025
GO:0140097
GO:0140110
HMNXSV003003764
ILMN_1678695
ILMN_1739101
ILMN_2363621
PH_hs_0025587
TC18000097.hg
U72066_at
g4506440_3p_a_at
Participates
as a component of
MRN:CtIP [nucleoplasm] (Homo sapiens)
RBBP8 homotetramer [nucleoplasm] (Homo sapiens)
as an output of
RBBP8 gene expression is inhibited by E2F6 (Homo sapiens)
Other forms of this molecule
p-S327,T847-RBBP8 [nucleoplasm]
Ac-K-RBBP8 [nucleoplasm]
p-S327,T847,T859-RBBP8 [nucleoplasm]
Inferred To
Rbbp8 [nucleoplasm]
(Mus musculus)
Rbbp8 [nucleoplasm]
(Rattus norvegicus)
RBBP8 [nucleoplasm]
(Bos taurus)
RBBP8 [nucleoplasm]
(Canis familiaris)
RBBP8 [nucleoplasm]
(Gallus gallus)
RBBP8 [nucleoplasm]
(Sus scrofa)
rbbp8 [nucleoplasm]
(Danio rerio)
rbbp8 [nucleoplasm]
(Xenopus tropicalis)
com-1 [nucleoplasm]
(Caenorhabditis elegans)
Ghost homologue of RBBP8 [nucleoplasm]
(Drosophila melanogaster)
Ghost homologue of RBBP8 [nucleoplasm]
(Schizosaccharomyces pombe)
Cross References
RefSeq
XP_006722583.1
,
NP_976037.1
,
XP_011524434.1
,
NP_002885.1
,
XP_006722582.1
,
XP_006722584.1
,
NP_976036.1
OpenTargets
ENSG00000101773
HPA
ENSG00000101773-RBBP8
GeneCards
Q99708
Ensembl
ENST00000327155
,
ENSP00000382630
,
ENST00000399722
,
ENSP00000323050
,
ENSP00000382628
,
ENST00000399725
,
ENSG00000101773
PRO
Q99708
Pharos - Targets
Q99708
Orphanet
20823
PDB
1Y98
,
2L4Z
,
7BGF
,
4D2H
Interactors (14)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:P38398 BRCA1
20
polySUMO2,3-BRCA1 [nucleoplasm]
(R-HSA-2997624)
monoSUMO1-K109-BRCA1 [nucleoplasm]
(R-HSA-2997644)
BRCA1 M1411T [nucleoplasm]
(R-HSA-9702140)
BRCA1 M1400V [nucleoplasm]
(R-HSA-9701202)
BRCA1 L1407P [nucleoplasm]
(R-HSA-9702135)
BRCA1 Y777* [nucleoplasm]
(R-HSA-9702765)
BRCA1 S1009* [nucleoplasm]
(R-HSA-9702755)
BRCA1 P724Lfs*12 [nucleoplasm]
(R-HSA-9703778)
BRCA1 S451* [nucleoplasm]
(R-HSA-9702754)
BRCA1 S864* [nucleoplasm]
(R-HSA-9702752)
BRCA1 P897Kfs*5 [nucleoplasm]
(R-HSA-9703782)
BRCA1 N555Kfs*17 [nucleoplasm]
(R-HSA-9703781)
BRCA1 Y1127Sfs*6 [nucleoplasm]
(R-HSA-9703780)
BRCA1 S886Cfs*16 [nucleoplasm]
(R-HSA-9703802)
BRCA1 V83Cfs*2 [nucleoplasm]
(R-HSA-9703800)
BRCA1 T464Pfs*11 [nucleoplasm]
(R-HSA-9703807)
BRCA1 G813Dfs*2 [nucleoplasm]
(R-HSA-9703549)
BRCA1 V340Gfs*6 [nucleoplasm]
(R-HSA-9703804)
BRCA1 Y655* [nucleoplasm]
(R-HSA-9702769)
BRCA1 W372* [nucleoplasm]
(R-HSA-9702768)
0.935
15
UniProt:Q13363 CTBP1
3
monoSUMO1-K428-CTBP1 [nucleoplasm]
(R-HSA-3108200)
polySUMO2,3-K428-CTBP1 [nucleoplasm]
(R-HSA-3108226)
CTBP1 [nucleoplasm]
(R-HSA-212372)
0.691
4
UniProt:P49959 MRE11
2
MRE11A [nucleoplasm]
(R-HSA-59544)
MRE11A [cytosol]
(R-HSA-3204309)
0.669
3
UniProt:Q9UQ84 EXO1
1
EXO1 [nucleoplasm]
(R-HSA-5357514)
0.656
4
UniProt:Q99708 RBBP8
4
p-S327,T847-RBBP8 [nucleoplasm]
(R-HSA-5684083)
RBBP8 [nucleoplasm]
(R-HSA-912399)
Ac-K-RBBP8 [nucleoplasm]
(R-HSA-5685955)
p-S327,T847,T859-RBBP8 [nucleoplasm]
(R-HSA-5684138)
0.65
4
UniProt:O75475 PSIP1
2
PSIP1 [nucleoplasm]
(R-HSA-3008841)
PSIP1 [cytosol]
(R-HSA-3008840)
0.602
4
UniProt:O60934 NBN
3
p-S343-NBN [nucleoplasm]
(R-HSA-75237)
NBN [cytosol]
(R-HSA-5684005)
NBN [nucleoplasm]
(R-HSA-75163)
0.564
2
UniProt:P06400 RB1
20
RB1 R661W [nucleoplasm]
(R-HSA-9659801)
RB1 C706F [nucleoplasm]
(R-HSA-9659812)
RB1 N480del [nucleoplasm]
(R-HSA-9659792)
RB1 C706Y [nucleoplasm]
(R-HSA-9659821)
RB1 R661Q [nucleoplasm]
(R-HSA-9659807)
RB1 I703_E737del [nucleoplasm]
(R-HSA-9661065)
RB1 R830_G887del [cytosol]
(R-HSA-9661059)
RB1 K791* [cytosol]
(R-HSA-9662284)
RB1 Q176* [cytosol]
(R-HSA-9661774)
RB1 S114* [cytosol]
(R-HSA-9661775)
RB1 K765* [cytosol]
(R-HSA-9662281)
RB1 W99* [cytosol]
(R-HSA-9661769)
RB1 S149* [cytosol]
(R-HSA-9661770)
RB1 E166* [cytosol]
(R-HSA-9661767)
RB1 G100* [cytosol]
(R-HSA-9661763)
RB1 E125* [cytosol]
(R-HSA-9661784)
RB1 Q121* [cytosol]
(R-HSA-9661780)
RB1 E184* [cytosol]
(R-HSA-9661781)
RB1 E137* [cytosol]
(R-HSA-9661782)
RB1 K745* [cytosol]
(R-HSA-9662288)
0.564
2
UniProt:P48059 LIMS1
1
LIMS1 [cytosol]
(R-HSA-432859)
0.553
2
UniProt:P56545 CTBP2
1
CTBP2 [nucleoplasm]
(R-HSA-5333990)
0.547
2
UniProt:Q9BS26 ERP44
2
ERP44 [extracellular region]
(R-HSA-6806302)
ERP44 [specific granule lumen]
(R-HSA-6799567)
0.527
2
UniProt:Q08999 RBL2
2
RBL2 [nucleoplasm]
(R-HSA-389102)
p-T401,S672,S1035-RBL2 [nucleoplasm]
(R-HSA-1226084)
0.508
2
UniProt:Q9NY61 AATF
1
AATF [cytosol]
(R-HSA-205071)
0.508
3
UniProt:Q9NVH0 EXD2
0.499
3
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