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SMNDC1 [nucleoplasm]
Stable Identifier
R-HSA-8865958
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
nucleoplasm
Synonyms
Survival of motor neuron-related-splicing factor 30, SPF30_HUMAN
Locations in the PathwayBrowser
Expand all
Metabolism of RNA (Homo sapiens)
Processing of Capped Intron-Containing Pre-mRNA (Homo sapiens)
mRNA Splicing (Homo sapiens)
mRNA Splicing - Major Pathway (Homo sapiens)
Disassembly of the Intron Lariat Spliceosome (new) (Homo sapiens)
Intron Lariat Spliceosome (ILS) [nucleoplasm] (Homo sapiens)
U2 12S snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
U2 12S snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal A complex (Homo sapiens)
Spliceosomal A complex [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal B complex (Homo sapiens)
Spliceosomal B complex [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Spliceosomal Pre-B complex [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal B* complex (Homo sapiens)
Spliceosomal B* complex [nucleoplasm] (Homo sapiens)
U2 12S snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Spliceosomal Bact complex [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal Bact complex (Homo sapiens)
Spliceosomal B complex [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Spliceosomal Bact complex [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal C complex containing intron lariat (Homo sapiens)
Spliceosomal B* complex [nucleoplasm] (Homo sapiens)
U2 12S snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Spliceosomal C complex [nucleoplasm] (Homo sapiens)
U2 12S snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal C* complex (Homo sapiens)
Spliceosomal C complex [nucleoplasm] (Homo sapiens)
U2 12S snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Spliceosomal C* complex [nucleoplasm] (Homo sapiens)
U2 12S snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal P complex and exon ligation (Homo sapiens)
Spliceosomal C* complex [nucleoplasm] (Homo sapiens)
U2 12S snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Spliceosomal P complex [nucleoplasm] (Homo sapiens)
U2 12S snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal Pre-B complex (Homo sapiens)
Spliceosomal A complex [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Spliceosomal Pre-B complex [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Spliceosomal P complex dissociates yielding the intron-containing complex (ILS) and the spliced mRNP (new) (Homo sapiens)
Intron Lariat Spliceosome (ILS) [nucleoplasm] (Homo sapiens)
U2 12S snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Spliceosomal P complex [nucleoplasm] (Homo sapiens)
U2 12S snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
External Reference Information
External Reference
UniProt:O75940 SMNDC1
Gene Names
SMNDC1, SMNR, SPF30
Chain
chain:1-238
Reference Genes
BioGPS Gene:10285 SMNDC1
COSMIC (genes):SMNDC1 SMNDC1
CTD Gene:10285 SMNDC1
dbSNP Gene:10285 SMNDC1
ENSEMBL:ENSG00000119953 SMNDC1
HGNC:16900 SMNDC1
KEGG:hsa:10285 SMNDC1
Monarch:10285 SMNDC1
NCBI Gene:10285 SMNDC1
OMIM:603519 SMNDC1
UCSC:O75940 SMNDC1
Reference Transcript
RefSeq:NM_005871.3 SMNDC1
Other Identifiers
10285
11720839_a_at
11720840_a_at
11720841_s_at
16650215
16650217
16650219
16650221
16650223
16650225
16650237
16650239
16650241
16650243
16650245
16650247
16650271
16650273
16718370
18670754
18670755
18670756
18670757
18670758
18670759
18670760
18670761
18670762
18670763
200071_PM_at
200071_at
3306511
3306513
3306515
3306517
3306518
3306519
3306520
3306521
3306522
3306523
3306524
3306525
3306526
3306527
3306528
3306529
3306530
3306531
3306532
3306533
3306534
3306535
3306547
3306549
3306551
3306553
3306555
3306557
3306571
38040_at
42636_at
7892537
7892549
7893005
7893030
7893257
7893349
7893518
7893604
7894138
7894457
7895085
7895160
7895499
7895546
7895629
7895738
7895830
7936307
A_23_P127233
A_33_P3219429
GE481429
GE79093
GO:0000375
GO:0003723
GO:0005515
GO:0005634
GO:0005654
GO:0005681
GO:0005737
GO:0006397
GO:0006915
GO:0008380
GO:0012501
GO:0015030
GO:0016071
GO:0016607
GO:0043226
HMNXSV003000810
Hs.79968.0.S2_3p_at
ILMN_1691789
PH_hs_0004616
TC10001655.hg
Participates
as a component of
U2 snRNP [nucleoplasm] (Homo sapiens)
U2 12S snRNP [nucleoplasm] (Homo sapiens)
Inferred To
Ghost homologue of SMNDC1 [nucleoplasm]
(Caenorhabditis elegans)
smndc1 [nucleoplasm]
(Danio rerio)
smndc1 [nucleoplasm]
(Xenopus tropicalis)
SMNDC1 [nucleoplasm]
(Bos taurus)
SMNDC1 [nucleoplasm]
(Canis familiaris)
SMNDC1 [nucleoplasm]
(Dictyostelium discoideum)
SMNDC1 [nucleoplasm]
(Gallus gallus)
SMNDC1 [nucleoplasm]
(Plasmodium falciparum)
SMNDC1 [nucleoplasm]
(Sus scrofa)
Smndc1 [nucleoplasm]
(Mus musculus)
Smndc1 [nucleoplasm]
(Rattus norvegicus)
spf30 [nucleoplasm]
(Schizosaccharomyces pombe)
Spf30 [nucleoplasm]
(Drosophila melanogaster)
Cross References
RefSeq
NP_005862.1
ENSEMBL
ENSP00000358605
,
ENSP00000358616
,
ENST00000369592
,
ENST00000369603
OpenTargets
ENSG00000119953
HPA
ENSG00000119953-SMNDC1
PRO
O75940
Pharos - Targets
O75940
GlyGen
O75940
PDB
8POI
,
4A4H
,
4A4F
Interactors (3)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:O75533 SF3B1
1
SF3B1 [nucleoplasm]
(R-HSA-71968)
0.731
5
UniProt:P19338 NCL
3
NCL [plasma membrane]
(R-HSA-9836466)
NCL [macropinosome membrane]
(R-HSA-9837666)
NCL [nucleoplasm]
(R-HSA-6791213)
0.536
2
UniProt:Q14498 RBM39
1
RBM39 [nucleoplasm]
(R-HSA-9770254)
0.483
2
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