Reactome | smndc1 [nucleoplasm]

smndc1 [nucleoplasm]

Stable Identifier

R-DRE-8865958

Type

Protein [EntityWithAccessionedSequence]

Species

Danio rerio

Compartment

nucleoplasm

Synonyms

SMNDC1, Q7ZV80

Locations in the PathwayBrowser

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Metabolism of RNA (Danio rerio)

- Processing of Capped Intron-Containing Pre-mRNA (Danio rerio)
  - mRNA 3'-end processing (Danio rerio)
    - mRNA Polyadenylation (Danio rerio)
      - Core CPA complex binds capped pre-mRNA (Danio rerio)
        
        Core CPA complex:Spliceosomal A complex (uncleaved pre-mRNA) [nucleoplasm] (Danio rerio)
        
        Spliceosomal A complex (capped, methylated pre-mRNA) [nucleoplasm] (Danio rerio)
        
        U2 snRNP [nucleoplasm] (Danio rerio)
        
        smndc1 [nucleoplasm] (Danio rerio)
        
        Spliceosomal A complex (capped, methylated pre-mRNA) [nucleoplasm] (Danio rerio)
        
        U2 snRNP [nucleoplasm] (Danio rerio)
        
        smndc1 [nucleoplasm] (Danio rerio)
      - PABPN1-stimulated PAPOL synthesizes polyA tail at distal 3'UTR PAS (Danio rerio)
        
        Ub-K63-CPA:PABPN1:Spliceosomal A complex (pre-mRNA polyadenylated at distal 3'UTR PAS) [nucleoplasm] (Danio rerio)
        
        Spliceosomal A complex (pre-mRNA polyadenylated at distal 3'UTR PAS) [nucleoplasm] (Danio rerio)
        
        U2 snRNP [nucleoplasm] (Danio rerio)
        
        smndc1 [nucleoplasm] (Danio rerio)
        
        Ub-K63-CPA:Spliceosomal A complex (pre-mRNA cleaved at distal 3'UTR PAS) [nucleoplasm] (Danio rerio)
        
        Spliceosomal A complex (pre-mRNA cleaved at distal 3'UTR PAS) [nucleoplasm] (Danio rerio)
        
        U2 snRNP [nucleoplasm] (Danio rerio)
        
        smndc1 [nucleoplasm] (Danio rerio)
      - PABPN1-stimulated PAPOL synthesizes polyA tail at intronic PAS (Danio rerio)
        
        Ub-K63-CPA:PABPN1:Spliceosomal A complex (pre-mRNA polyadenylated at intronic PAS) [nucleoplasm] (Danio rerio)
        
        Spliceosomal A complex (pre-mRNA polyadenylated at intronic PAS) [nucleoplasm] (Danio rerio)
        
        U2 snRNP [nucleoplasm] (Danio rerio)
        
        smndc1 [nucleoplasm] (Danio rerio)
        
        Ub-K63-CPA:Spliceosomal A complex (pre-mRNA cleaved at intronic PAS) [nucleoplasm] (Danio rerio)
        
        Spliceosomal A complex (pre-mRNA cleaved at intronal PAS) [nucleoplasm] (Danio rerio)
        
        U2 snRNP [nucleoplasm] (Danio rerio)
        
        smndc1 [nucleoplasm] (Danio rerio)
      - PABPN1-stimulated PAPOL synthesizes polyA tail at proximal 3'UTR PAS (Danio rerio)
        
        Ub-K63-CPA:PABPN1:Spliceosomal A complex (pre-mRNA polyadenylated at proximal 3'UTR PAS) [nucleoplasm] (Danio rerio)
        
        Spliceosomal A complex (pre-mRNA polyadenylated at proximal 3'UTR PAS) [nucleoplasm] (Danio rerio)
        
        U2 snRNP [nucleoplasm] (Danio rerio)
        
        smndc1 [nucleoplasm] (Danio rerio)
        
        Ub-K63-CPA:Spliceosomal A complex (pre-mRNA cleaved at proximal 3'UTR PAS) [nucleoplasm] (Danio rerio)
        
        Spliceosomal A complex (pre-mRNA cleaved at proximal 3'UTR PAS) [nucleoplasm] (Danio rerio)
        
        U2 snRNP [nucleoplasm] (Danio rerio)
        
        smndc1 [nucleoplasm] (Danio rerio)
      - PP1 dephosphorylates RNA Pol II (Danio rerio)
        
        CPA:Spliceosomal A complex (uncleaved pre-mRNA) [nucleoplasm] (Danio rerio)
        
        Spliceosomal A complex (capped, methylated pre-mRNA) [nucleoplasm] (Danio rerio)
        
        U2 snRNP [nucleoplasm] (Danio rerio)
        
        smndc1 [nucleoplasm] (Danio rerio)
        
        CPA:Spliceosomal A complex (uncleaved pre-mRNA, RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Danio rerio)
        
        Spliceosomal A complex (RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Danio rerio)
        
        U2 snRNP [nucleoplasm] (Danio rerio)
        
        smndc1 [nucleoplasm] (Danio rerio)
      - RBBP6 activates CPSF complex (Danio rerio)
        
        CPA:Spliceosomal A complex (uncleaved pre-mRNA, RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Danio rerio)
        
        Spliceosomal A complex (RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Danio rerio)
        
        U2 snRNP [nucleoplasm] (Danio rerio)
        
        smndc1 [nucleoplasm] (Danio rerio)
        
        Ub-K63-CPA:Spliceosomal A complex (uncleaved pre-mRNA, RNA Pol II Ser2 dephosphorylated) [nucleoplasm] (Danio rerio)
        
        Spliceosomal A complex (RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Danio rerio)
        
        U2 snRNP [nucleoplasm] (Danio rerio)
        
        smndc1 [nucleoplasm] (Danio rerio)
  - mRNA Splicing (Danio rerio)
    - mRNA Splicing - Major Pathway (Danio rerio)
      - Formation of the Spliceosomal C complex containing intron lariat (Danio rerio)
        
        Spliceosomal B* complex [nucleoplasm] (Danio rerio)
        
        U2 12S snRNP [nucleoplasm] (Danio rerio)
        
        smndc1 [nucleoplasm] (Danio rerio)
        
        Spliceosomal C complex [nucleoplasm] (Danio rerio)
        
        U2 12S snRNP [nucleoplasm] (Danio rerio)
        
        smndc1 [nucleoplasm] (Danio rerio)
      - Formation of the Spliceosomal P complex and exon ligation (Danio rerio)
        
        Spliceosomal C* complex [nucleoplasm] (Danio rerio)
        
        U2 12S snRNP [nucleoplasm] (Danio rerio)
        
        smndc1 [nucleoplasm] (Danio rerio)
        
        Spliceosomal P complex [nucleoplasm] (Danio rerio)
        
        U2 12S snRNP [nucleoplasm] (Danio rerio)
        
        smndc1 [nucleoplasm] (Danio rerio)

External Reference Information

External Reference

UniProt:Q7ZV80

Gene Names

smndc1

Reference Genes

BioGPS Gene:572679 smndc1

ENSEMBL:ENSDARG00000056235

KEGG:dre:572679 smndc1

Monarch:572679 smndc1

NCBI Gene:572679 smndc1

UCSC:Q7ZV80 smndc1

Reference Transcript

RefSeq:NM_212601.3 smndc1

Other Identifiers

13044885

572679

A_15_P112769

A_15_P622461

A_15_P755511

BC067338

CUST_4151_PI428451958

DRER03954

Dr.9205.1.S1_at

ENSDART00000031547

ENSDART00000031547_1

ENSDART00000031547_2

GO:0003723

GO:0005634

GO:0005737

GO:0006397

GO:0016071

GT_Spec_NM_212601.2_67701

LOLS15107

MADDr01007467

NM_212601

OTTDART00000025382

XM_679109

Participates

as a component of

Inferred From

SMNDC1 [nucleoplasm] (Homo sapiens)

Cross References

RefSeq

NP_997766.1

ENSEMBL

ENSDARG00000056235, ENSDARP00000146987, ENSDARP00000038215, ENSDART00000031547, ENSDARG00000117084, ENSDARP00000147770, ENSDART00000180115, ENSDART00000193732

ZFIN

ZDB-GENE-030131-614

PRO

Q7ZV80

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