Reactome Pathway Database

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Reactome Pathway Database

  • About
    • What is Reactome ?
    • News
    • Team
    • Scientific Advisory Board
    • Funding
    • Editorial Calendar
    • Release Calendar
    • Statistics
    • Our Logo
    • License Agreement
    • Privacy Notice
    • Disclaimer
    • Digital Preservation
    • Contact us
  • Content
    • Table of Contents
    • DOIs
    • Data Schema
    • Reactome Research Spotlight
    • ORCID Integration Project
    • COVID-19 Disease Pathways
  • Docs
    • Userguide
      • Pathway Browser
      • How do I search ?
      • Details Panel
      • Analysis Tools
        • Analysis Data
        • Analysis Gene Expression
        • Species Comparison
        • Tissue Distribution
      • Diseases
      • Cytomics
      • Review Status of Reactome Events
      • ReactomeFIViz
    • Developer's Zone
      • Graph Database
      • Analysis Service
      • Content Service
      • Pathways Overview
      • Pathway Diagrams
    • Icon Info
      • EHLD Specs & Guidelines
      • Icon Library Guidelines
    • Data Model
    • Curator Guide
    • Release Documentation
    • Computationally inferred events
    • FAQ
    • Linking to Us
    • Citing us
  • Tools
    • Pathway Browser
    • Analyse gene list
    • Analyse gene expression
    • Species Comparison
    • Tissue Distribution
    • Analysis Service
    • Content Service
    • ReactomeFIViz
    • Advanced Data Search
    • Site Search
  • Community
    • Contribute Pathway Knowledge
    • Icon Library
    • Outreach
    • Events
    • Publications
    • Partners
    • Contributors
    • Resources Guide
  • Download
  • General website
  • Illustrations/Figures
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    • General
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    • FIViz
  • Graph Database and cypher query
  1. I am having trouble installing a local Reactome Neo4J server.
  2. I have a list of input genes. I want to retrieve all the pathways in which the genes are involved. How can I do this using a Neo4j Cypher query?
  3. I have a list of Reactome pathway IDs. I want to find whether any of them are disease pathways and also retrieve associated disease names. Is it possible to retrieve the information using API or neo4j graph database query?
  4. How can I use Neo4J to identify all the genes for a given pathway?
  5. Is it possible to directly connect my protein protein interaction network with the Reactome database or do I have to extract the required data and separately build the graph?
  • About
    • What is Reactome ?
    • News
    • Team
    • Scientific Advisory Board
    • Funding
    • Editorial Calendar
    • Release Calendar
    • Statistics
    • Our Logo
    • License Agreement
    • Privacy Notice
    • Disclaimer
    • Digital Preservation
    • Contact us
  • Content
    • Table of Contents
    • DOIs
    • Data Schema
    • Reactome Research Spotlight
    • ORCID Integration Project
    • COVID-19 Disease Pathways
  • Docs
    • Userguide
    • Developer's Zone
    • Icon Info
    • Data Model
    • Curator Guide
    • Release Documentation
    • Computationally inferred events
    • FAQ
    • Linking to Us
    • Citing us
  • Tools
    • Pathway Browser
    • Analyse gene list
    • Analyse gene expression
    • Species Comparison
    • Tissue Distribution
    • Analysis Service
    • Content Service
    • ReactomeFIViz
    • Advanced Data Search
    • Site Search
  • Community
    • Contribute Pathway Knowledge
    • Icon Library
    • Outreach
    • Events
    • Publications
    • Partners
    • Contributors
    • Resources Guide
  • Download

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