Reactome Pathway Database

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Reactome Pathway Database

  • About
    • What is Reactome ?
    • News
    • Team
    • Scientific Advisory Board
    • Funding
    • Editorial Calendar
    • Release Calendar
    • Statistics
    • Our Logo
    • License Agreement
    • Privacy Notice
    • Disclaimer
    • Digital Preservation
    • Contact us
  • Content
    • Table of Contents
    • DOIs
    • Data Schema
    • Reactome Research Spotlight
    • ORCID Integration Project
    • COVID-19 Disease Pathways
  • Docs
    • Userguide
      • Pathway Browser
      • How do I search ?
      • Details Panel
      • Analysis Tools
        • Analysis Data
        • Analysis Gene Expression
        • Species Comparison
        • Tissue Distribution
      • Diseases
      • Cytomics
      • Review Status of Reactome Events
      • ReactomeFIViz
    • Developer's Zone
      • Graph Database
      • Analysis Service
      • Content Service
      • Pathways Overview
      • Pathway Diagrams
    • Icon Info
      • EHLD Specs & Guidelines
      • Icon Library Guidelines
    • Data Model
    • Curator Guide
    • Release Documentation
    • Computationally inferred events
    • FAQ
    • Linking to Us
    • Citing us
  • Tools
    • Pathway Browser
    • Analyse gene list
    • Analyse gene expression
    • Species Comparison
    • Tissue Distribution
    • Analysis Service
    • Content Service
    • ReactomeFIViz
    • Advanced Data Search
    • Site Search
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    • Contribute Pathway Knowledge
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  • Graph Database and cypher query
  1. I used the “Analyse gene expression” tool with my mouse proteomics data set. I notice that the database is based on human pathways – does the software automatically convert my mouse gene names to the human orthologs? Or can’t I use the software for mouse?
  2. The analysis report includes lists of significantly up- and down-regulated single genes. Which statistical analysis does the software use for these values?
  3. Can I visualize gene expression data (color nodes) according to gene expression level with Reactome?
  4. After submitting a list of genes for Reactome Analysis, how do I download the fully expanded 'Event Hierarchy' list on the left side of the screen?
  5. Is it possible to know how many of my uploaded genes are found within each specific hierarchical pathway category identified in the Reacfoam view? For instance, how many of my genes belong to pathways that would be included in the "Immune" category, etc.
  6. Is there a permanent link available for my analysis results?
  • About
    • What is Reactome ?
    • News
    • Team
    • Scientific Advisory Board
    • Funding
    • Editorial Calendar
    • Release Calendar
    • Statistics
    • Our Logo
    • License Agreement
    • Privacy Notice
    • Disclaimer
    • Digital Preservation
    • Contact us
  • Content
    • Table of Contents
    • DOIs
    • Data Schema
    • Reactome Research Spotlight
    • ORCID Integration Project
    • COVID-19 Disease Pathways
  • Docs
    • Userguide
    • Developer's Zone
    • Icon Info
    • Data Model
    • Curator Guide
    • Release Documentation
    • Computationally inferred events
    • FAQ
    • Linking to Us
    • Citing us
  • Tools
    • Pathway Browser
    • Analyse gene list
    • Analyse gene expression
    • Species Comparison
    • Tissue Distribution
    • Analysis Service
    • Content Service
    • ReactomeFIViz
    • Advanced Data Search
    • Site Search
  • Community
    • Contribute Pathway Knowledge
    • Icon Library
    • Outreach
    • Events
    • Publications
    • Partners
    • Contributors
    • Resources Guide
  • Download

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