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sdc1 [Golgi lumen]
Stable Identifier
R-XTR-2076290
Type
Protein [EntityWithAccessionedSequence]
Species
Xenopus tropicalis
Compartment
Golgi lumen
Synonyms
HS(5)-SDC1, A0A803JF35
Locations in the PathwayBrowser
Expand all
Metabolism (Xenopus tropicalis)
Metabolism of carbohydrates (Xenopus tropicalis)
Glycosaminoglycan metabolism (Xenopus tropicalis)
Heparan sulfate/heparin (HS-GAG) metabolism (Xenopus tropicalis)
HS-GAG biosynthesis (Xenopus tropicalis)
HS6STs sulfate GlcN at C6 in heparan sulfate/heparin (Xenopus tropicalis)
HS(5)-PGs [Golgi lumen] (Xenopus tropicalis)
sdc1 [Golgi lumen] (Xenopus tropicalis)
Some HSPGs are secreted to the plasma membrane (Xenopus tropicalis)
HSPGs [Golgi lumen] (Xenopus tropicalis)
HS(5)-PGs [Golgi lumen] (Xenopus tropicalis)
sdc1 [Golgi lumen] (Xenopus tropicalis)
External Reference Information
External Reference
UniProt:A0A803JF35
Gene Names
sdc1
Reference Genes
ENSEMBL:ENSXETG00000049205
KEGG Gene (Xenopus tropicalis):100038138 sdc1
Reference Transcript
RefSeq:XM_031902967.1 sdc1
Other Identifiers
100038138
GO:0016020
Participates
as a member of
HS(5)-PGs [Golgi lumen] (Xenopus tropicalis)
Other forms of this molecule
sdc1 [plasma membrane]
sdc1 [lysosomal lumen]
sdc1 [plasma membrane]
sdc1 [plasma membrane]
sdc1 [plasma membrane]
sdc1 [plasma membrane]
sdc1 [plasma membrane]
sdc1 [plasma membrane]
sdc1 [Golgi lumen]
sdc1 [Golgi lumen]
sdc1 [Golgi lumen]
sdc1 [Golgi lumen]
sdc1 [Golgi lumen]
sdc1 [Golgi lumen]
sdc1 [Golgi lumen]
sdc1 [Golgi lumen]
sdc1 [Golgi lumen]
sdc1 [Golgi lumen]
sdc1 [Golgi lumen]
sdc1 [Golgi lumen]
sdc1 [Golgi lumen]
sdc1 [Golgi lumen]
sdc1 [Golgi lumen]
sdc1 [lysosomal lumen]
Inferred From
HS(5)-SDC1 [Golgi lumen]
(Homo sapiens)
Modified Residues
Name
O-xylosyl-L-serine (ChEBI:63661) at unknown position
Modification
beta-D-IdoA-(1->4)-alpha-D-GlcNS-(1->4)-beta-D-IdoA2S-(1->4)-alpha-D-GlcNS3S-(1->4)-beta-D-GlcA-(1->3)-beta-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Xyl-yl group
PsiMod Name
O-xylosyl-L-serine
PsiMod Definition
A protein modification that effectively converts an L-serine residue to O3-xylosylserine.
Cross References
RefSeq
XP_031758827.1
Xenbase
XB-GENE-494960
Ensembl
ENSXETG00000049205
,
ENSXETP00000106528
,
ENSXETT00000113617
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