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SS18 [nucleoplasm]
Stable Identifier
R-HSA-9727441
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
nucleoplasm
Synonyms
Protein SSXT, SSXT_HUMAN
Locations in the PathwayBrowser
Expand all
Developmental Biology (Homo sapiens)
MITF-M-regulated melanocyte development (Homo sapiens)
MITF-M-dependent gene expression (Homo sapiens)
Regulation of MITF-M-dependent genes involved in pigmentation (Homo sapiens)
MITF-M and the SWI/SNF complex bind the TYR promoter (Homo sapiens)
BAF complex [nucleoplasm] (Homo sapiens)
SS18,SS18L1 [nucleoplasm] (Homo sapiens)
SS18 [nucleoplasm] (Homo sapiens)
M-MITF dimer:BAF complex:TYR gene [nucleoplasm] (Homo sapiens)
BAF complex [nucleoplasm] (Homo sapiens)
SS18,SS18L1 [nucleoplasm] (Homo sapiens)
SS18 [nucleoplasm] (Homo sapiens)
MITF-M dimer and the SWI/SNF complex bind the TYRP1 promoter (Homo sapiens)
BAF complex [nucleoplasm] (Homo sapiens)
SS18,SS18L1 [nucleoplasm] (Homo sapiens)
SS18 [nucleoplasm] (Homo sapiens)
MITF-M dimer:BAF complex:TYRP1 gene [nucleoplasm] (Homo sapiens)
BAF complex [nucleoplasm] (Homo sapiens)
SS18,SS18L1 [nucleoplasm] (Homo sapiens)
SS18 [nucleoplasm] (Homo sapiens)
MITF-M-dependent TYR gene expression (Homo sapiens)
M-MITF dimer:BAF complex:TYR gene [nucleoplasm] (Homo sapiens)
BAF complex [nucleoplasm] (Homo sapiens)
SS18,SS18L1 [nucleoplasm] (Homo sapiens)
SS18 [nucleoplasm] (Homo sapiens)
MITF-M-dependent TYRP1 gene expression (Homo sapiens)
MITF-M dimer:BAF complex:TYRP1 gene [nucleoplasm] (Homo sapiens)
BAF complex [nucleoplasm] (Homo sapiens)
SS18,SS18L1 [nucleoplasm] (Homo sapiens)
SS18 [nucleoplasm] (Homo sapiens)
Gene expression (Transcription) (Homo sapiens)
Epigenetic regulation of gene expression (Homo sapiens)
Regulation of endogenous retroelements (Homo sapiens)
Regulation of endogenous retroelements by Piwi-interacting RNAs (piRNAs) (Homo sapiens)
DNMT3A:DNMT3L in nascent RNA transcript:MeR-PIWIL4:2'-O-methyl-piRNA:SPOCD1:DNMT3A:DNMT3L methylates cytosine in DNA (Homo sapiens)
nascent LINE-1 RNA transcript:MeR-PIWIL4:2'-O-methyl-piRNA:SPOCD1:DNMT3A:DNMT3L [nucleoplasm] (Homo sapiens)
BAF complex [nucleoplasm] (Homo sapiens)
SS18,SS18L1 [nucleoplasm] (Homo sapiens)
SS18 [nucleoplasm] (Homo sapiens)
PIWIL4:piRNA binds nascent LINE1 pre-RNA and recruits SPOCD1, C19ORF84, DNMT3A, DNMT3L, the NURD complex, and the BAF complex (Homo sapiens)
BAF complex [nucleoplasm] (Homo sapiens)
SS18,SS18L1 [nucleoplasm] (Homo sapiens)
SS18 [nucleoplasm] (Homo sapiens)
nascent LINE-1 RNA transcript:MeR-PIWIL4:2'-O-methyl-piRNA:SPOCD1:DNMT3A:DNMT3L [nucleoplasm] (Homo sapiens)
BAF complex [nucleoplasm] (Homo sapiens)
SS18,SS18L1 [nucleoplasm] (Homo sapiens)
SS18 [nucleoplasm] (Homo sapiens)
External Reference Information
External Reference
UniProt:Q15532 SS18
Gene Names
SS18, SSXT, SYT
Chain
initiator methionine:, chain:2-418
Reference Genes
BioGPS Gene:6760 SS18
COSMIC (genes):SS18 SS18
CTD Gene:6760 SS18
dbSNP Gene:6760 SS18
ENSEMBL:ENSG00000141380 SS18
HGNC:11340 SS18
Monarch:6760 SS18
NCBI Gene:6760 SS18
OMIM:600192 SS18
UCSC:Q15532 SS18
Reference Transcript
RefSeq:NM_001308201.1 SS18
RefSeq:NM_005637.3 SS18
RefSeq:NM_001007559.2 SS18
Other Identifiers
11722799_a_at
11722800_a_at
11722801_s_at
11736501_x_at
11745649_s_at
11747986_a_at
11748790_a_at
16854375
202816_PM_s_at
202816_s_at
202817_PM_s_at
202817_s_at
209954_PM_x_at
209954_x_at
216684_PM_s_at
216684_s_at
31872_at
34069_s_at
3802160
3802161
3802162
3802163
3802164
3802165
3802166
3802167
3802168
3802169
3802170
3802171
3802177
3802178
3802179
3802180
3802183
3802184
3802187
3802190
3802191
3802192
3802195
3802196
3802197
3802198
3802199
3802200
3802202
3802204
3802205
3802206
3802207
3802208
3802209
3802210
59084_at
6760
8022625
A_23_P141738
A_24_P384851
GE80422
GO:0000226
GO:0000785
GO:0000902
GO:0003713
GO:0005515
GO:0005634
GO:0005654
GO:0005856
GO:0006325
GO:0006338
GO:0006355
GO:0006357
GO:0007010
GO:0008284
GO:0009410
GO:0015630
GO:0016514
GO:0030374
GO:0035556
GO:0043226
GO:0043227
GO:0043229
GO:0045596
GO:0045893
GO:0045944
GO:0048013
GO:0060090
GO:0071564
GO:0097150
GO:0140110
GO:0140288
GO:1902459
HMNXSV003008193
Hs.153221.0.A1_3p_a_at
Hs.153221.1.A1_3p_s_at
ILMN_1686957
ILMN_1741782
ILMN_1805646
ILMN_2359096
PH_hs_0024627
TC18000423.hg
TC18000873.hg
X79201_at
g13384207_3p_s_at
g5032124_3p_a_at
Participates
as a member of
SS18,SS18L1 [nucleoplasm] (Homo sapiens)
Cross References
ENSEMBL
ENST00000415083
,
ENST00000269137
,
ENSP00000269137
,
ENSP00000414516
OpenTargets
ENSG00000141380
HPA
ENSG00000141380-SS18
PRO
Q15532
Pharos - Targets
Q15532
GlyGen
Q15532
PDB
7VRB
Interactors (2)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:P51532 SMARCA4
1
SMARCA4 [nucleoplasm]
(R-HSA-201686)
0.758
24
UniProt:P15336 ATF2
2
p-T69,T71-ATF2 [nucleoplasm]
(R-HSA-450243)
ATF2 [nucleoplasm]
(R-HSA-450336)
0.499
2
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