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SNU13 [nucleoplasm]
Stable Identifier
R-HSA-71887
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
nucleoplasm
Synonyms
NHP2L1, tri-snRNP 15.5 kDa protein, NHP2-like protein 1, High mobility group-like nuclear protein 2 homolog 1, (U4/U6.U5) tri-snRNP 15.5 kDa protein, OTK27
Locations in the PathwayBrowser
Expand all
Metabolism of RNA (Homo sapiens)
Processing of Capped Intron-Containing Pre-mRNA (Homo sapiens)
mRNA Splicing (Homo sapiens)
mRNA Splicing - Major Pathway (Homo sapiens)
Formation of the Spliceosomal B complex (Homo sapiens)
Spliceosomal Pre-B complex [nucleoplasm] (Homo sapiens)
U4:U5:U6 tri-snRNP complex [nucleoplasm] (Homo sapiens)
U4 snRNP:U6 snRNP complex [nucleoplasm] (Homo sapiens)
U4 snRNP [nucleoplasm] (Homo sapiens)
SNU13 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal Bact complex (Homo sapiens)
U4 snRNP [nucleoplasm] (Homo sapiens)
SNU13 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal Pre-B complex (Homo sapiens)
Spliceosomal Pre-B complex [nucleoplasm] (Homo sapiens)
U4:U5:U6 tri-snRNP complex [nucleoplasm] (Homo sapiens)
U4 snRNP:U6 snRNP complex [nucleoplasm] (Homo sapiens)
U4 snRNP [nucleoplasm] (Homo sapiens)
SNU13 [nucleoplasm] (Homo sapiens)
U4:U5:U6 tri-snRNP complex [nucleoplasm] (Homo sapiens)
U4 snRNP:U6 snRNP complex [nucleoplasm] (Homo sapiens)
U4 snRNP [nucleoplasm] (Homo sapiens)
SNU13 [nucleoplasm] (Homo sapiens)
rRNA processing (Homo sapiens)
rRNA processing in the nucleus and cytosol (Homo sapiens)
Major pathway of rRNA processing in the nucleolus and cytosol (Homo sapiens)
21S pre-rRNA is nucleolytically processed at site E (site2a) to yield 18SE pre-rRNA (Homo sapiens)
18SE pre-rRNA:SSU processome [nucleoplasm] (Homo sapiens)
SSU Processome [nucleoplasm] (Homo sapiens)
U3 snoRNP [nucleoplasm] (Homo sapiens)
SNU13 [nucleoplasm] (Homo sapiens)
21S pre-rRNA:SSU processome [nucleoplasm] (Homo sapiens)
SSU Processome [nucleoplasm] (Homo sapiens)
U3 snoRNP [nucleoplasm] (Homo sapiens)
SNU13 [nucleoplasm] (Homo sapiens)
30S pre-rRNA is nucleolytically processed at site 1 to yield 21S pre-rRNA (Homo sapiens)
21S pre-rRNA:SSU processome [nucleoplasm] (Homo sapiens)
SSU Processome [nucleoplasm] (Homo sapiens)
U3 snoRNP [nucleoplasm] (Homo sapiens)
SNU13 [nucleoplasm] (Homo sapiens)
30S pre-rRNA:SSU processome [nucleoplasm] (Homo sapiens)
SSU Processome [nucleoplasm] (Homo sapiens)
U3 snoRNP [nucleoplasm] (Homo sapiens)
SNU13 [nucleoplasm] (Homo sapiens)
45S pre-rRNA is nucleolytically processed at site 2 (site 2b) to yield 30S pre-rRNA and 32S pre-rRNA (Homo sapiens)
30S pre-rRNA:SSU processome [nucleoplasm] (Homo sapiens)
SSU Processome [nucleoplasm] (Homo sapiens)
U3 snoRNP [nucleoplasm] (Homo sapiens)
SNU13 [nucleoplasm] (Homo sapiens)
45S pre-rRNA:SSU processome [nucleoplasm] (Homo sapiens)
SSU Processome [nucleoplasm] (Homo sapiens)
U3 snoRNP [nucleoplasm] (Homo sapiens)
SNU13 [nucleoplasm] (Homo sapiens)
47S pre-rRNA is nucleolytically processed at A' (01,A1), site A0, and site 02 (site 6) to yield 45S pre-rRNA (Homo sapiens)
45S pre-rRNA:SSU processome [nucleoplasm] (Homo sapiens)
SSU Processome [nucleoplasm] (Homo sapiens)
U3 snoRNP [nucleoplasm] (Homo sapiens)
SNU13 [nucleoplasm] (Homo sapiens)
47S pre-rRNA:SSU processome [nucleoplasm] (Homo sapiens)
SSU Processome [nucleoplasm] (Homo sapiens)
U3 snoRNP [nucleoplasm] (Homo sapiens)
SNU13 [nucleoplasm] (Homo sapiens)
rRNA modification in the nucleus and cytosol (Homo sapiens)
Box C/D snoRNP methylates ribonucleotides in pre-rRNA yielding 2'-O-methylribonucleotides (Homo sapiens)
Box C/D snoRNP [nucleoplasm] (Homo sapiens)
SNU13 [nucleoplasm] (Homo sapiens)
EMG1 of the SSU processome methylates pseudouridine-1248 of 18S rRNA yielding N(1)-methylpseudouridine-1248 (Homo sapiens)
SSU Processome [nucleoplasm] (Homo sapiens)
U3 snoRNP [nucleoplasm] (Homo sapiens)
SNU13 [nucleoplasm] (Homo sapiens)
External Reference Information
External Reference
UniProt:P55769 SNU13
Gene Names
SNU13, NHP2L1
Chain
chain:1-128, initiator methionine:, chain:2-128
Reference Genes
BioGPS Gene:4809 SNU13
COSMIC (genes):SNU13 SNU13
CTD Gene:4809 SNU13
dbSNP Gene:4809 SNU13
ENSEMBL:ENSG00000100138 SNU13
HGNC:7819 SNU13
KEGG:hsa:4809 SNU13
Monarch:4809 SNU13
NCBI Gene:4809 SNU13
OMIM:601304 SNU13
UCSC:P55769 SNU13
Reference Transcript
RefSeq:NM_005008.3 SNU13
RefSeq:NM_001003796.1 SNU13
Other Identifiers
11715426_s_at
11715427_at
16935490
201076_PM_at
201076_at
201077_PM_s_at
201077_s_at
230443_PM_at
230443_at
3439273
3962055
3962056
3962057
3962065
3962066
3962068
3962069
3962070
3962071
3962072
3962073
41746_at
4809
76256_at
8076374
A_23_P80362
A_24_P382765
GE78982
GO:0000398
GO:0000470
GO:0000492
GO:0001651
GO:0003723
GO:0005515
GO:0005634
GO:0005654
GO:0005681
GO:0005690
GO:0005730
GO:0006397
GO:0007338
GO:0008380
GO:0016071
GO:0022414
GO:0022625
GO:0030490
GO:0030515
GO:0030621
GO:0030622
GO:0031428
GO:0032040
GO:0032991
GO:0034511
GO:0034512
GO:0042254
GO:0042274
GO:0043226
GO:0046540
GO:0051117
GO:0065003
GO:0071005
GO:0071011
GO:1990904
HMNXSV003040024
Hs.120453.0.A1_3p_at
ILMN_1697614
ILMN_1709809
ILMN_1763460
PH_hs_0010764
PH_hs_0039596
TC22000831.hg
g4826859_3p_at
g6318598_3p_a_at
Participates
as a component of
Box C/D snoRNP [nucleoplasm] (Homo sapiens)
U3 snoRNP [nucleoplasm] (Homo sapiens)
U4 snRNP [nucleoplasm] (Homo sapiens)
Inferred To
SNU13 [nucleoplasm]
(Bos taurus)
SNU13 [nucleoplasm]
(Canis familiaris)
SNU13 [nucleoplasm]
(Dictyostelium discoideum)
SNU13 [nucleoplasm]
(Gallus gallus)
SNU13 [nucleoplasm]
(Plasmodium falciparum)
SNU13 [nucleoplasm]
(Saccharomyces cerevisiae)
SNU13 [nucleoplasm]
(Sus scrofa)
snu-13 [nucleoplasm]
(Caenorhabditis elegans)
hoip [nucleoplasm]
(Drosophila melanogaster)
Snu13 [nucleoplasm]
(Mus musculus)
Snu13 [nucleoplasm]
(Rattus norvegicus)
snu13 [nucleoplasm]
(Schizosaccharomyces pombe)
snu13 [nucleoplasm]
(Xenopus tropicalis)
Cross References
RefSeq
NP_004999.1
,
NP_001003796.1
OpenTargets
ENSG00000100138
ENSEMBL
ENSP00000497142
,
ENSP00000383949
,
ENSP00000215956
,
ENST00000648674
,
ENST00000401959
,
ENST00000215956
HPA
ENSG00000100138-SNU13
PRO
P55769
Pharos - Targets
P55769
GlyGen
P55769
PDB
6AH0
,
8Y6O
,
8H6K
,
5O9Z
,
8R0A
,
2OZB
,
8QO9
,
8R09
,
3SIU
,
8R0B
,
1E7K
,
3JCR
,
3SIV
,
8H6J
,
8H6L
,
8RM5
,
8R08
,
8H6E
,
8QZS
,
8QPE
,
6QW6
,
7MQ8
,
8QPA
,
7MQA
,
8QOZ
,
6QX9
,
7MQ9
,
6AHD
,
8Q7N
,
8QPB
,
8QXD
,
2JNB
Interactors (2)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:Q9Y2X3 NOP58
3
polySUMO2-K467,K497-NOP58 [nucleoplasm]
(R-HSA-4570460)
monoSUMO1-K467,K497-NOP58 [nucleoplasm]
(R-HSA-4570470)
NOP58 [nucleoplasm]
(R-HSA-4570488)
0.564
2
UniProt:P19320 VCAM1
1
VCAM1 [plasma membrane]
(R-HSA-197834)
0.527
4
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