Reactome | sf3b4 [nucleoplasm]

sf3b4 [nucleoplasm]

Stable Identifier

R-XTR-71975

Type

Protein [EntityWithAccessionedSequence]

Species

Xenopus tropicalis

Compartment

nucleoplasm

Synonyms

SF3B4, Q6P872

Locations in the PathwayBrowser

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Metabolism of RNA (Xenopus tropicalis)

- Processing of Capped Intron-Containing Pre-mRNA (Xenopus tropicalis)
  - mRNA 3'-end processing (Xenopus tropicalis)
    - mRNA Polyadenylation (Xenopus tropicalis)
      - Core CPA complex binds capped pre-mRNA (Xenopus tropicalis)
        
        Core CPA complex:Spliceosomal A complex (uncleaved pre-mRNA) [nucleoplasm] (Xenopus tropicalis)
        
        Spliceosomal A complex (capped, methylated pre-mRNA) [nucleoplasm] (Xenopus tropicalis)
        
        U2 snRNP [nucleoplasm] (Xenopus tropicalis)
        
        SF3B [nucleoplasm] (Xenopus tropicalis)
        
        sf3b4 [nucleoplasm] (Xenopus tropicalis)
        
        Spliceosomal A complex (capped, methylated pre-mRNA) [nucleoplasm] (Xenopus tropicalis)
        
        U2 snRNP [nucleoplasm] (Xenopus tropicalis)
        
        SF3B [nucleoplasm] (Xenopus tropicalis)
        
        sf3b4 [nucleoplasm] (Xenopus tropicalis)
      - PP1 dephosphorylates RNA Pol II (Xenopus tropicalis)
        
        CPA:Spliceosomal A complex (uncleaved pre-mRNA) [nucleoplasm] (Xenopus tropicalis)
        
        Spliceosomal A complex (capped, methylated pre-mRNA) [nucleoplasm] (Xenopus tropicalis)
        
        U2 snRNP [nucleoplasm] (Xenopus tropicalis)
        
        SF3B [nucleoplasm] (Xenopus tropicalis)
        
        sf3b4 [nucleoplasm] (Xenopus tropicalis)
        
        CPA:Spliceosomal A complex (uncleaved pre-mRNA, RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Xenopus tropicalis)
        
        Spliceosomal A complex (RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Xenopus tropicalis)
        
        U2 snRNP [nucleoplasm] (Xenopus tropicalis)
        
        SF3B [nucleoplasm] (Xenopus tropicalis)
        
        sf3b4 [nucleoplasm] (Xenopus tropicalis)
      - RBBP6 activates CPSF complex (Xenopus tropicalis)
        
        CPA:Spliceosomal A complex (uncleaved pre-mRNA, RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Xenopus tropicalis)
        
        Spliceosomal A complex (RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Xenopus tropicalis)
        
        U2 snRNP [nucleoplasm] (Xenopus tropicalis)
        
        SF3B [nucleoplasm] (Xenopus tropicalis)
        
        sf3b4 [nucleoplasm] (Xenopus tropicalis)
        
        Ub-K63-CPA:Spliceosomal A complex (uncleaved pre-mRNA, RNA Pol II Ser2 dephosphorylated) [nucleoplasm] (Xenopus tropicalis)
        
        Spliceosomal A complex (RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Xenopus tropicalis)
        
        U2 snRNP [nucleoplasm] (Xenopus tropicalis)
        
        SF3B [nucleoplasm] (Xenopus tropicalis)
        
        sf3b4 [nucleoplasm] (Xenopus tropicalis)
  - mRNA Splicing (Xenopus tropicalis)
    - mRNA Splicing - Minor Pathway (Xenopus tropicalis)
      - ATAC spliceosome mediated Lariat formation,5' splice site cleavage (Xenopus tropicalis)
        
        ATAC C Complex [nucleoplasm] (Xenopus tropicalis)
        
        U12 snRNP [nucleoplasm] (Xenopus tropicalis)
        
        SF3B [nucleoplasm] (Xenopus tropicalis)
        
        sf3b4 [nucleoplasm] (Xenopus tropicalis)
      - Formation of AT-AC B Complex (Xenopus tropicalis)
        
        ATAC A Complex [nucleoplasm] (Xenopus tropicalis)
        
        U12 snRNP [nucleoplasm] (Xenopus tropicalis)
        
        SF3B [nucleoplasm] (Xenopus tropicalis)
        
        sf3b4 [nucleoplasm] (Xenopus tropicalis)
        
        ATAC B Complex [nucleoplasm] (Xenopus tropicalis)
        
        ATAC A Complex [nucleoplasm] (Xenopus tropicalis)
        
        U12 snRNP [nucleoplasm] (Xenopus tropicalis)
        
        SF3B [nucleoplasm] (Xenopus tropicalis)
        
        sf3b4 [nucleoplasm] (Xenopus tropicalis)
      - Formation of AT-AC C complex (Xenopus tropicalis)
        
        ATAC B Complex [nucleoplasm] (Xenopus tropicalis)
        
        ATAC A Complex [nucleoplasm] (Xenopus tropicalis)
        
        U12 snRNP [nucleoplasm] (Xenopus tropicalis)
        
        SF3B [nucleoplasm] (Xenopus tropicalis)
        
        sf3b4 [nucleoplasm] (Xenopus tropicalis)
        
        ATAC C Complex [nucleoplasm] (Xenopus tropicalis)
        
        U12 snRNP [nucleoplasm] (Xenopus tropicalis)
        
        SF3B [nucleoplasm] (Xenopus tropicalis)
        
        sf3b4 [nucleoplasm] (Xenopus tropicalis)

External Reference Information

External Reference

UniProt:Q6P872

Gene Names

sf3b4

Reference Genes

BioGPS Gene:394721 sf3b4

ENSEMBL:ENSXETG00000011038

KEGG:xtr:394721 sf3b4

Monarch:394721 sf3b4

NCBI Gene:394721 sf3b4

UCSC:Q6P872 sf3b4

Reference Transcript

RefSeq:NM_203785.2 sf3b4

Other Identifiers

394721

GO:0000398

GO:0003676

GO:0003723

GO:0005634

GO:0005681

GO:0005686

GO:0006397

GO:0008380

GO:0016071

GO:0071011

Participates

as a component of

SF3B [nucleoplasm] (Xenopus tropicalis)

Inferred From

SF3B4 [nucleoplasm] (Homo sapiens)

Cross References

RefSeq

NP_989116.1

ENSEMBL

ENSXETT00000024144, ENSXETP00000024144, ENSXETG00000011038

Xenbase

XB-GENE-492933

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