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5Hyl-COL13A1(?-717) [extracellular region]
Stable Identifier
R-HSA-2471847
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
extracellular region
Synonyms
5-hydroxylysyl-collagen alpha-1(XIII) chain ectodomain
Locations in the PathwayBrowser
Expand all
Extracellular matrix organization (Homo sapiens)
Degradation of the extracellular matrix (Homo sapiens)
Collagen degradation (Homo sapiens)
Collagen type XIII ectodomain shedding (Homo sapiens)
Collagen alpha-1(XIII) ectodomains [extracellular region] (Homo sapiens)
5Hyl-COL13A1(?-717) [extracellular region] (Homo sapiens)
External Reference Information
External Reference
UniProt:Q5TAT6 COL13A1
Gene Names
COL13A1
Chain
chain:1-717
Reference Genes
BioGPS Gene:1305 COL13A1
COSMIC (genes):COL13A1 COL13A1
CTD Gene:1305 COL13A1
dbSNP Gene:1305 COL13A1
ENSEMBL:ENSG00000197467 COL13A1
ENSEMBL_homo_sapiens_GENE:ENSG00000197467.17 COL13A1
HGNC:2190 COL13A1
KEGG Gene (Homo sapiens):1305 COL13A1
Monarch:1305 COL13A1
NCBI Gene:1305 COL13A1
OMIM:120350 COL13A1
UCSC:Q5TAT6 COL13A1
Reference Transcript
RefSeq:NM_080798.3 COL13A1
RefSeq:NM_080801.3 COL13A1
RefSeq:NM_001130103.1 COL13A1
RefSeq:NM_080800.3 COL13A1
RefSeq:NM_080805.3 COL13A1
RefSeq:NM_080802.3 COL13A1
Other Identifiers
11730533_a_at
11730534_x_at
11742450_a_at
11750544_a_at
1305
16705661
211343_PM_s_at
211343_s_at
211809_PM_x_at
211809_x_at
3250487
3250488
3250489
3250501
3250518
3250520
3250524
3250535
3250538
3250540
3250544
3250545
3250548
3250551
3250552
3250555
3250559
3250560
3250562
3250564
3250565
3250567
3250569
3250570
3250571
3250572
3250574
3250575
3250576
3250577
3250579
3250581
3250582
3250586
3250591
3250594
3250595
3250596
38951_at
38952_s_at
7928069
A_14_P137897
A_23_P1331
A_24_P90005
GE88279
GO:0001501
GO:0001503
GO:0001763
GO:0001958
GO:0005198
GO:0005515
GO:0005576
GO:0005581
GO:0005600
GO:0005615
GO:0005783
GO:0005788
GO:0005886
GO:0005911
GO:0007155
GO:0007160
GO:0008201
GO:0016020
GO:0030020
GO:0030154
GO:0030198
GO:0030312
GO:0031012
GO:0043226
GO:0045202
GO:0045211
GO:0048856
GO:0062023
GO:0098609
HMNXSV003033959
ILMN_2311052
ILMN_2370624
M33653_at
PH_hs_0012290
TC10000424.hg
g178319_3p_a_at
g178319_3p_x_at
g180828_3p_a_at
g4885144_3p_x_at
Participates
as a member of
Collagen alpha-1(XIII) ectodomains [extracellular region] (Homo sapiens)
Other forms of this molecule
GlcGalHyl-COL13A1 [endoplasmic reticulum lumen]
3x4Hyp-GlcGalHyl-COL13A1 [endoplasmic reticulum lumen]
GalHyl-COL13A1 [endoplasmic reticulum lumen]
3x4Hyp-3Hyp-GlcGalHyl-COL13A1 [endoplasmic reticulum lumen]
3x4Hyp-3Hyp-GalHyl-COL13A1 [endoplasmic reticulum lumen]
3x4Hyp-GalHyl-COL13A1 [endoplasmic reticulum lumen]
COL13A1 [endoplasmic reticulum lumen]
3x4Hyp-COL13A1 [endoplasmic reticulum lumen]
3x4Hyp-3Hyp-COL13A1 [endoplasmic reticulum lumen]
3x4Hyp-5Hyl-COL13A1 [endoplasmic reticulum lumen]
3x4Hyp-3Hyp-5Hyl-COL13A1 [endoplasmic reticulum lumen]
5Hyl-COL13A1 [endoplasmic reticulum lumen]
3x4Hyp-5Hyl-COL13A1(?-717) [extracellular region]
3x4Hyp-GlcGalHyl-COL13A1(?-717) [extracellular region]
3x4Hyp-3Hyp-GlcGalHyl-COL13A1(?-717) [extracellular region]
GlcGalHyl-COL13A1(?-717) [extracellular region]
3x4Hyp-3Hyp-5Hyl-COL13A1(?-717) [extracellular region]
3x4Hyp-3Hyp-COL13A1(?-717) [extracellular region]
3x4Hyp-COL13A1(?-717) [extracellular region]
3x4Hyp-GalHyl-COL13A1(?-717) [extracellular region]
COL13A1(?-717) [extracellular region]
GalHyl-COL13A1(?-717) [extracellular region]
3x4Hyp-3Hyp-GalHyl-COL13A1(?-717) [extracellular region]
3x4Hyp-GlcGalHyl-COL13A1(1-?) [plasma membrane]
3x4Hyp-3Hyp-5Hyl-COL13A1(1-?) [plasma membrane]
3x4Hyp-3Hyp-COL13A1(1-?) [plasma membrane]
3x4Hyp-COL13A1(1-?) [plasma membrane]
COL13A1(1-?) [plasma membrane]
GalHyl-COL13A1(1-?) [plasma membrane]
3x4Hyp-GalHyl-COL13A1(1-?) [plasma membrane]
GlcGalHyl-COL13A1(1-?) [plasma membrane]
3x4Hyp-5Hyl-COL13A1(1-?) [plasma membrane]
3x4Hyp-3Hyp-GlcGalHyl-COL13A1(1-?) [plasma membrane]
5Hyl-COL13A1(1-?) [plasma membrane]
3x4Hyp-3Hyp-GalHyl-COL13A1(1-?) [plasma membrane]
3x4Hyp-3Hyp-GlcGalHyl-COL13A1 [plasma membrane]
3x4Hyp-3Hyp-COL13A1 [plasma membrane]
GalHyl-COL13A1 [plasma membrane]
3x4Hyp-COL13A1 [plasma membrane]
COL13A1 [plasma membrane]
3x4Hyp-3Hyp-5Hyl-COL13A1 [plasma membrane]
3x4Hyp-5Hyl-COL13A1 [plasma membrane]
5Hyl-COL13A1 [plasma membrane]
3x4Hyp-GlcGalHyl-COL13A1 [plasma membrane]
3x4Hyp-GalHyl-COL13A1 [plasma membrane]
GlcGalHyl-COL13A1 [plasma membrane]
3x4Hyp-3Hyp-GalHyl-COL13A1 [plasma membrane]
Inferred To
Col13a1 [extracellular region]
(Mus musculus)
Col13a1 [extracellular region]
(Rattus norvegicus)
col27a1 [extracellular region]
(Xenopus tropicalis)
5Hyl-COL13A1(?-717) [extracellular region]
(Danio rerio)
COL13A1 [extracellular region]
(Bos taurus)
COL13A1 [extracellular region]
(Canis familiaris)
COL13A1 [extracellular region]
(Sus scrofa)
Modified Residues
Name
(2S,5R)-5-hydroxylysine at unknown position
PsiMod Name
(2S,5R)-5-hydroxylysine
PsiMod Definition
A protein modification that effectively converts an L-lysine residue to 5-hydroxy-L-lysine.
Cross References
RefSeq
NP_542991.3
,
NP_542995.3
,
NP_542988.3
,
NP_542990.3
,
NP_542992.3
,
NP_001123575.1
OpenTargets
ENSG00000197467
GeneCards
Q5TAT6
HPA
ENSG00000197467-COL13A1
Ensembl
ENSP00000430061
,
ENSP00000430173
,
ENST00000517713
,
ENST00000398978
,
ENSP00000428057
,
ENSP00000428342
,
ENSG00000197467
,
ENSP00000346553
,
ENSP00000381949
,
ENST00000522165
,
ENST00000520133
,
ENST00000520267
,
ENST00000354547
PRO
Q5TAT6
Pharos - Targets
Q5TAT6
Orphanet
23552
HMDB Protein
HMDBP02699
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