Reactome | SF3B4 [nucleoplasm]

SF3B4 [nucleoplasm]

Stable Identifier

R-GGA-71975

Type

Protein [EntityWithAccessionedSequence]

Species

Gallus gallus

Compartment

nucleoplasm

Synonyms

SF3B4, H9L019

Locations in the PathwayBrowser

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Metabolism of RNA (Gallus gallus)

- Processing of Capped Intron-Containing Pre-mRNA (Gallus gallus)
  - mRNA 3'-end processing (Gallus gallus)
    - mRNA Polyadenylation (Gallus gallus)
      - Core CPA complex binds capped pre-mRNA (Gallus gallus)
        
        Core CPA complex:Spliceosomal A complex (uncleaved pre-mRNA) [nucleoplasm] (Gallus gallus)
        
        Spliceosomal A complex (capped, methylated pre-mRNA) [nucleoplasm] (Gallus gallus)
        
        U2 snRNP [nucleoplasm] (Gallus gallus)
        
        SF3B [nucleoplasm] (Gallus gallus)
        
        SF3B4 [nucleoplasm] (Gallus gallus)
        
        Spliceosomal A complex (capped, methylated pre-mRNA) [nucleoplasm] (Gallus gallus)
        
        U2 snRNP [nucleoplasm] (Gallus gallus)
        
        SF3B [nucleoplasm] (Gallus gallus)
        
        SF3B4 [nucleoplasm] (Gallus gallus)
      - PP1 dephosphorylates RNA Pol II (Gallus gallus)
        
        CPA:Spliceosomal A complex (uncleaved pre-mRNA) [nucleoplasm] (Gallus gallus)
        
        Spliceosomal A complex (capped, methylated pre-mRNA) [nucleoplasm] (Gallus gallus)
        
        U2 snRNP [nucleoplasm] (Gallus gallus)
        
        SF3B [nucleoplasm] (Gallus gallus)
        
        SF3B4 [nucleoplasm] (Gallus gallus)
        
        CPA:Spliceosomal A complex (uncleaved pre-mRNA, RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Gallus gallus)
        
        Spliceosomal A complex (RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Gallus gallus)
        
        U2 snRNP [nucleoplasm] (Gallus gallus)
        
        SF3B [nucleoplasm] (Gallus gallus)
        
        SF3B4 [nucleoplasm] (Gallus gallus)
      - RBBP6 activates CPSF complex (Gallus gallus)
        
        CPA:Spliceosomal A complex (uncleaved pre-mRNA, RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Gallus gallus)
        
        Spliceosomal A complex (RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Gallus gallus)
        
        U2 snRNP [nucleoplasm] (Gallus gallus)
        
        SF3B [nucleoplasm] (Gallus gallus)
        
        SF3B4 [nucleoplasm] (Gallus gallus)
        
        Ub-K63-CPA:Spliceosomal A complex (uncleaved pre-mRNA, RNA Pol II Ser2 dephosphorylated) [nucleoplasm] (Gallus gallus)
        
        Spliceosomal A complex (RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Gallus gallus)
        
        U2 snRNP [nucleoplasm] (Gallus gallus)
        
        SF3B [nucleoplasm] (Gallus gallus)
        
        SF3B4 [nucleoplasm] (Gallus gallus)
  - mRNA Splicing (Gallus gallus)
    - mRNA Splicing - Minor Pathway (Gallus gallus)
      - ATAC spliceosome mediated 3' splice site cleavage, exon ligation (Gallus gallus)
        
        ATAC C Complex [nucleoplasm] (Gallus gallus)
        
        U12 snRNP [nucleoplasm] (Gallus gallus)
        
        SF3B [nucleoplasm] (Gallus gallus)
        
        SF3B4 [nucleoplasm] (Gallus gallus)
        
        U12 snRNP [nucleoplasm] (Gallus gallus)
        
        SF3B [nucleoplasm] (Gallus gallus)
        
        SF3B4 [nucleoplasm] (Gallus gallus)
      - ATAC spliceosome mediated Lariat formation,5' splice site cleavage (Gallus gallus)
        
        ATAC C Complex [nucleoplasm] (Gallus gallus)
        
        U12 snRNP [nucleoplasm] (Gallus gallus)
        
        SF3B [nucleoplasm] (Gallus gallus)
        
        SF3B4 [nucleoplasm] (Gallus gallus)
      - Formation of AT-AC B Complex (Gallus gallus)
        
        ATAC A Complex [nucleoplasm] (Gallus gallus)
        
        U12 snRNP [nucleoplasm] (Gallus gallus)
        
        SF3B [nucleoplasm] (Gallus gallus)
        
        SF3B4 [nucleoplasm] (Gallus gallus)
        
        ATAC B Complex [nucleoplasm] (Gallus gallus)
        
        ATAC A Complex [nucleoplasm] (Gallus gallus)
        
        U12 snRNP [nucleoplasm] (Gallus gallus)
        
        SF3B [nucleoplasm] (Gallus gallus)
        
        SF3B4 [nucleoplasm] (Gallus gallus)
      - Formation of AT-AC C complex (Gallus gallus)
        
        ATAC B Complex [nucleoplasm] (Gallus gallus)
        
        ATAC A Complex [nucleoplasm] (Gallus gallus)
        
        U12 snRNP [nucleoplasm] (Gallus gallus)
        
        SF3B [nucleoplasm] (Gallus gallus)
        
        SF3B4 [nucleoplasm] (Gallus gallus)
        
        ATAC C Complex [nucleoplasm] (Gallus gallus)
        
        U12 snRNP [nucleoplasm] (Gallus gallus)
        
        SF3B [nucleoplasm] (Gallus gallus)
        
        SF3B4 [nucleoplasm] (Gallus gallus)

External Reference Information

External Reference

UniProt:H9L019

Gene Names

SF3B4

Reference Genes

BioGPS Gene:426042 SF3B4

ENSEMBL:ENSGALG00010028887.1

Monarch:426042 SF3B4

NCBI Gene:426042 SF3B4

UCSC:H9L019 SF3B4

Reference Transcript

Other Identifiers

426042

GO:0000398

GO:0003676

GO:0003723

GO:0005634

GO:0005681

GO:0005684

GO:0005686

GO:0005689

GO:0006397

GO:0008380

GO:0016071

GO:0071005

GO:0071011

GO:1990935

GT_A_87_P016444

GT_A_87_P023003

Gga.11467.1.S1_x_at

Gga.3891.1.S1_at

GgaAffx.24181.1.S1_at

Participates

as a component of

SF3B [nucleoplasm] (Gallus gallus)

Inferred From

SF3B4 [nucleoplasm] (Homo sapiens)

Cross References

RefSeq

XP_423721.2, XP_040546588.1

ENSEMBL

ENSGALP00010042994, ENSGALG00010028887, ENSGALT00010069868