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ctr9 [nucleoplasm]
Stable Identifier
R-DRE-8866694
Type
Protein [EntityWithAccessionedSequence]
Species
Danio rerio
Compartment
nucleoplasm
Synonyms
CTR9, A3KDM3
Locations in the PathwayBrowser
Expand all
Chromatin organization (Danio rerio)
ATP-dependent chromatin remodelers (Danio rerio)
CHD chromatin remodelers (Danio rerio)
CHD1 and CHD2 subfamily (Danio rerio)
CHD1:H3K4me3 interacts with post-initiation transcription complexes (Danio rerio)
CHD1:H3K4 nucleosome:FACT complex:U2 snRNP complex:PAF1C complex [nucleoplasm] (Danio rerio)
PAF1C [nucleoplasm] (Danio rerio)
ctr9 [nucleoplasm] (Danio rerio)
PAF1C [nucleoplasm] (Danio rerio)
ctr9 [nucleoplasm] (Danio rerio)
Gene expression (Transcription) (Danio rerio)
RNA Polymerase II Transcription (Danio rerio)
RNA Polymerase II Pre-transcription Events (Danio rerio)
2-4 nt.backtracking of Pol II complex on the template leading to elongation pausing (Danio rerio)
Paused processive elongation complex [nucleoplasm] (Danio rerio)
PAF1C [nucleoplasm] (Danio rerio)
ctr9 [nucleoplasm] (Danio rerio)
Processive elongation complex [nucleoplasm] (Danio rerio)
PAF1C [nucleoplasm] (Danio rerio)
ctr9 [nucleoplasm] (Danio rerio)
7-14 nt. Backtracking of Pol II complex on the template leading to elongation arrest (Danio rerio)
Processive elongation complex [nucleoplasm] (Danio rerio)
PAF1C [nucleoplasm] (Danio rerio)
ctr9 [nucleoplasm] (Danio rerio)
Abortive termination of elongation after arrest (Danio rerio)
Aborted elongation complex after arrest [nucleoplasm] (Danio rerio)
PAF1C [nucleoplasm] (Danio rerio)
ctr9 [nucleoplasm] (Danio rerio)
Processive elongation complex [nucleoplasm] (Danio rerio)
PAF1C [nucleoplasm] (Danio rerio)
ctr9 [nucleoplasm] (Danio rerio)
Resumption of elongation after recovery from pausing (Danio rerio)
Paused processive elongation complex [nucleoplasm] (Danio rerio)
PAF1C [nucleoplasm] (Danio rerio)
ctr9 [nucleoplasm] (Danio rerio)
Processive elongation complex [nucleoplasm] (Danio rerio)
PAF1C [nucleoplasm] (Danio rerio)
ctr9 [nucleoplasm] (Danio rerio)
TFIIS-mediated recovery of elongation from arrest (Danio rerio)
Processive elongation complex [nucleoplasm] (Danio rerio)
PAF1C [nucleoplasm] (Danio rerio)
ctr9 [nucleoplasm] (Danio rerio)
RNA Polymerase II Transcription Elongation (Danio rerio)
Addition of nucleotides leads to transcript elongation (Danio rerio)
Elongation complex [nucleoplasm] (Danio rerio)
PAF1C [nucleoplasm] (Danio rerio)
ctr9 [nucleoplasm] (Danio rerio)
Processive elongation complex [nucleoplasm] (Danio rerio)
PAF1C [nucleoplasm] (Danio rerio)
ctr9 [nucleoplasm] (Danio rerio)
Pol II elongation complex moves on the template as transcript elongates (Danio rerio)
Elongation complex prior to separation [nucleoplasm] (Danio rerio)
PAF1C [nucleoplasm] (Danio rerio)
ctr9 [nucleoplasm] (Danio rerio)
Processive elongation complex [nucleoplasm] (Danio rerio)
PAF1C [nucleoplasm] (Danio rerio)
ctr9 [nucleoplasm] (Danio rerio)
Separation of elongating transcript from template (Danio rerio)
Elongation complex prior to separation [nucleoplasm] (Danio rerio)
PAF1C [nucleoplasm] (Danio rerio)
ctr9 [nucleoplasm] (Danio rerio)
Elongation complex with separated and uncleaved transcript [nucleoplasm] (Danio rerio)
PAF1C [nucleoplasm] (Danio rerio)
ctr9 [nucleoplasm] (Danio rerio)
External Reference Information
External Reference
UniProt:A3KDM3
Gene Names
ctr9
Reference Genes
BioGPS Gene:100036549 ctr9
ENSEMBL:ENSDARG00000009170
KEGG:dre:100036549 ctr9
Monarch:100036549 ctr9
NCBI Gene:100036549 ctr9
UCSC:A3KDM3 ctr9
Reference Transcript
RefSeq:NM_001083583.1 ctr9
Other Identifiers
100036549
13232566
A_15_P100075
A_15_P176206
A_15_P224881
A_15_P436935
CJ003796
CJ005145
DRER02713
Dr.21765.1.A1_at
ENSDART00000021317
ENSDART00000021317_2
GO:0005515
GO:0006355
GT_Spec_NM_001083583.1_356915
JP004195
JP005544
LOLS03727
LOLS04520
XM_680142
XM_693519
ZV700S00003631
Participates
as a component of
PAF1C [nucleoplasm] (Danio rerio)
Inferred From
CTR9 [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
NP_001077052.1
ENSEMBL
ENSDARP00000016047
,
ENSDART00000021317
,
ENSDARG00000009170
ZFIN
ZDB-GENE-030131-3782
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