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CTR9 [nucleoplasm]
Stable Identifier
R-HSA-8866694
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
nucleoplasm
Synonyms
RNA polymerase-associated protein CTR9 homolog, CTR9_HUMAN
Locations in the PathwayBrowser
Expand all
Gene expression (Transcription) (Homo sapiens)
RNA Polymerase II Transcription (Homo sapiens)
RNA Polymerase II Pre-transcription Events (Homo sapiens)
2-4 nt.backtracking of Pol II complex on the template leading to elongation pausing (Homo sapiens)
Paused processive elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
CTR9 [nucleoplasm] (Homo sapiens)
Processive elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
CTR9 [nucleoplasm] (Homo sapiens)
7-14 nt. Backtracking of Pol II complex on the template leading to elongation arrest (Homo sapiens)
Arrested processive elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
CTR9 [nucleoplasm] (Homo sapiens)
Processive elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
CTR9 [nucleoplasm] (Homo sapiens)
Abortive termination of elongation after arrest (Homo sapiens)
Aborted elongation complex after arrest [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
CTR9 [nucleoplasm] (Homo sapiens)
Arrested processive elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
CTR9 [nucleoplasm] (Homo sapiens)
Elongating transcript encounters a lesion in the template (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
CTR9 [nucleoplasm] (Homo sapiens)
Processive elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
CTR9 [nucleoplasm] (Homo sapiens)
Resumption of elongation after recovery from pausing (Homo sapiens)
Paused processive elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
CTR9 [nucleoplasm] (Homo sapiens)
Processive elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
CTR9 [nucleoplasm] (Homo sapiens)
TFIIS-mediated recovery of elongation from arrest (Homo sapiens)
Arrested processive elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
CTR9 [nucleoplasm] (Homo sapiens)
Processive elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
CTR9 [nucleoplasm] (Homo sapiens)
RNA Polymerase II Transcription Elongation (Homo sapiens)
Addition of nucleotides leads to transcript elongation (Homo sapiens)
Elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
CTR9 [nucleoplasm] (Homo sapiens)
Processive elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
CTR9 [nucleoplasm] (Homo sapiens)
Formation of RNA Pol II elongation complex (Homo sapiens)
Recruitment of elongation factors to form elongation complex (Homo sapiens)
Elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
CTR9 [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
CTR9 [nucleoplasm] (Homo sapiens)
Pol II elongation complex moves on the template as transcript elongates (Homo sapiens)
Elongation complex prior to separation [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
CTR9 [nucleoplasm] (Homo sapiens)
Processive elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
CTR9 [nucleoplasm] (Homo sapiens)
Separation of elongating transcript from template (Homo sapiens)
Elongation complex prior to separation [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
CTR9 [nucleoplasm] (Homo sapiens)
Elongation complex with separated and uncleaved transcript [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
CTR9 [nucleoplasm] (Homo sapiens)
Metabolism of proteins (Homo sapiens)
Post-translational protein modification (Homo sapiens)
Protein ubiquitination (Homo sapiens)
E3 ubiquitin ligases ubiquitinate target proteins (Homo sapiens)
RNF20:RNF40 binds PAF complex, Ubiquitin:UBE2A,B (Ubiquitin:RAD6), WAC and Histone H2B (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
CTR9 [nucleoplasm] (Homo sapiens)
PAF1c:WAC:RNF20:RNF40:Ub:UBE2A,B:HIST1H2B [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
CTR9 [nucleoplasm] (Homo sapiens)
RNF20:RNF40 monoubiquitinates Histone H2B (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
CTR9 [nucleoplasm] (Homo sapiens)
PAF1c:WAC:RNF20:RNF40:Ub:UBE2A,B:HIST1H2B [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
CTR9 [nucleoplasm] (Homo sapiens)
External Reference Information
External Reference
UniProt:Q6PD62 CTR9
Gene Names
CTR9, KIAA0155, SH2BP1
Chain
chain:1-1173
Reference Genes
BioGPS Gene:9646 CTR9
COSMIC (genes):CTR9 CTR9
CTD Gene:9646 CTR9
dbSNP Gene:9646 CTR9
ENSEMBL:ENSG00000198730 CTR9
HGNC:16850 CTR9
KEGG:hsa:9646 CTR9
Monarch:9646 CTR9
NCBI Gene:9646 CTR9
OMIM:609366 CTR9
UCSC:Q6PD62 CTR9
Reference Transcript
RefSeq:NM_014633.4 CTR9
Other Identifiers
11716883_s_at
11717769_at
16721965
16721996
200833_PM_s_at
200833_s_at
202060_PM_at
202060_at
3320317
3320318
3320319
3320320
3320321
3320323
3320324
3320326
3320328
3320329
3320332
3320333
3320334
3320335
3320336
3320337
3320338
3320339
3320340
3320341
3320342
3320343
3320344
3320346
3320347
3320348
3320349
3320351
3320352
3320354
3320355
3320357
3320358
3320359
3320360
3320361
3320362
3320363
3320372
3421152
40146_at
40844_at
7938422
9646
A_14_P103697
A_21_P0007173
A_23_P127676
D63875_at
GE57280
GO:0000122
GO:0000791
GO:0000993
GO:0001711
GO:0001826
GO:0001829
GO:0001832
GO:0001835
GO:0005515
GO:0005634
GO:0005654
GO:0006325
GO:0006355
GO:0006368
GO:0007259
GO:0016055
GO:0016593
GO:0016607
GO:0019827
GO:0030154
GO:0032991
GO:0042169
GO:0043226
GO:0045638
GO:0045814
GO:0045944
GO:0070102
GO:0071222
HMNXSV003014262
HMNXSV003043565
ILMN_1665164
ILMN_2120917
PH_hs_0010387
TC11000187.hg
TC11000188.hg
TC11002556.hg
g7661677_3p_a_at
g7661949_3p_at
p18414
p2650
Participates
as a component of
PAF1C [nucleoplasm] (Homo sapiens)
Inferred To
Ctr9 [nucleoplasm]
(Drosophila melanogaster)
Ctr9 [nucleoplasm]
(Mus musculus)
Ctr9 [nucleoplasm]
(Rattus norvegicus)
ctr9 [nucleoplasm]
(Danio rerio)
ctr9 [nucleoplasm]
(Dictyostelium discoideum)
ctr9 [nucleoplasm]
(Xenopus tropicalis)
ctr-9 [nucleoplasm]
(Caenorhabditis elegans)
tpr1 [nucleoplasm]
(Schizosaccharomyces pombe)
CTR9 [nucleoplasm]
(Bos taurus)
CTR9 [nucleoplasm]
(Canis familiaris)
CTR9 [nucleoplasm]
(Gallus gallus)
CTR9 [nucleoplasm]
(Saccharomyces cerevisiae)
CTR9 [nucleoplasm]
(Sus scrofa)
Cross References
ENSEMBL
ENST00000361367
,
ENSP00000355013
OpenTargets
ENSG00000198730
HPA
ENSG00000198730-CTR9
PRO
Q6PD62
Pharos - Targets
Q6PD62
GlyGen
Q6PD62
PDB
5ZYQ
,
6TED
,
6GMH
,
7UNC
,
7OOP
,
7UND
,
7OPC
,
7OPD
Interactors (8)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:Q6P1J9 CDC73
1
CDC73 [nucleoplasm]
(R-HSA-3322360)
0.938
25
UniProt:Q8WVC0 LEO1
1
LEO1 [nucleoplasm]
(R-HSA-3322361)
0.789
15
UniProt:Q03164 KMT2A
6
KMT2A [cytosol]
(R-HSA-9818584)
KMT2A(2719-3969) [cytosol]
(R-HSA-9818590)
KMT2A(1-2718) [cytosol]
(R-HSA-9818597)
KMT2A [nucleoplasm]
(R-HSA-1183223)
KMT2A(1-2718) [nucleoplasm]
(R-HSA-9818591)
KMT2A(2719-3969) [nucleoplasm]
(R-HSA-9818593)
0.576
5
UniProt:Q8WY64 MYLIP
1
MYLIP [cytosol]
(R-HSA-8850908)
0.527
2
UniProt:O00267 SUPT5H
1
p-SUPT5H [nucleoplasm]
(R-HSA-3009372)
0.527
2
UniProt:Q15370 ELOB
2
TCEB2 [nucleoplasm]
(R-HSA-112423)
ELOB [cytosol]
(R-HSA-180551)
0.527
2
UniProt:P50750 CDK9
1
CDK9 [nucleoplasm]
(R-HSA-51801)
0.527
2
UniProt:O60563 CCNT1
1
CCNT1 [nucleoplasm]
(R-HSA-51611)
0.527
2
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