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pabpn1 [nucleoplasm]
Stable Identifier
R-DRE-72008
Type
Protein [EntityWithAccessionedSequence]
Species
Danio rerio
Compartment
nucleoplasm
Synonyms
PABPN1, Q6NUT4
Locations in the PathwayBrowser
Expand all
Gene expression (Transcription) (Danio rerio)
RNA Polymerase II Transcription (Danio rerio)
RNA Polymerase II Transcription Termination (Danio rerio)
Cleavage of Intronless Pre-mRNA at 3'-end (Danio rerio)
intronless pre-mRNA cleavage complex [nucleoplasm] (Danio rerio)
pabpn1 [nucleoplasm] (Danio rerio)
upstream mRNA fragment:CPSF:PAP:PABPN1 complex [nucleoplasm] (Danio rerio)
pabpn1 [nucleoplasm] (Danio rerio)
Metabolism of RNA (Danio rerio)
Nuclear RNA decay (Danio rerio)
MTREX (MTR4, SKIV2L2) in PAXT:RBM26:RBM27:ZC3H3:YTHDC1:YTHDC2:CBCA:polyadenylated m7GpppN-RNA:PABPN1 binds the RNA exosome (Danio rerio)
PAXT:PAPOLG:RBM26:RBM27:ZC3H3:YTHDC1:YTHDC2:CBCA:polyadenylated m7GpppN-RNA:PABPN1 [nucleoplasm] (Danio rerio)
CBCA:polyadenylated m7GpppN-RNA:PABPN1 [nucleoplasm] (Danio rerio)
pabpn1 [nucleoplasm] (Danio rerio)
PAXT:PAPOLG:RBM26:RBM27:ZC3H3:YTHDC1:YTHDC2:CBCA:polyadenylated m7GpppN-RNA:PAPBN1:RNA exosome [nucleoplasm] (Danio rerio)
PAXT:PAPOLG:RBM26:RBM27:ZC3H3:YTHDC1:YTHDC2:CBCA:polyadenylated m7GpppN-RNA:PABPN1 [nucleoplasm] (Danio rerio)
CBCA:polyadenylated m7GpppN-RNA:PABPN1 [nucleoplasm] (Danio rerio)
pabpn1 [nucleoplasm] (Danio rerio)
Processing of Capped Intron-Containing Pre-mRNA (Danio rerio)
mRNA 3'-end processing (Danio rerio)
mRNA Polyadenylation (Danio rerio)
PABPN1-stimulated PAPOL synthesizes polyA tail at distal 3'UTR PAS (Danio rerio)
Ub-K63-CPA:PABPN1:Spliceosomal A complex (pre-mRNA polyadenylated at distal 3'UTR PAS) [nucleoplasm] (Danio rerio)
pabpn1 [nucleoplasm] (Danio rerio)
pabpn1 [nucleoplasm] (Danio rerio)
PABPN1-stimulated PAPOL synthesizes polyA tail at intronic PAS (Danio rerio)
Ub-K63-CPA:PABPN1:Spliceosomal A complex (pre-mRNA polyadenylated at intronic PAS) [nucleoplasm] (Danio rerio)
pabpn1 [nucleoplasm] (Danio rerio)
pabpn1 [nucleoplasm] (Danio rerio)
PABPN1-stimulated PAPOL synthesizes polyA tail at proximal 3'UTR PAS (Danio rerio)
Ub-K63-CPA:PABPN1:Spliceosomal A complex (pre-mRNA polyadenylated at proximal 3'UTR PAS) [nucleoplasm] (Danio rerio)
pabpn1 [nucleoplasm] (Danio rerio)
pabpn1 [nucleoplasm] (Danio rerio)
Processing of Capped Intronless Pre-mRNA (Danio rerio)
Processing of Intronless Pre-mRNAs (Danio rerio)
Cleavage of Intronless Pre-mRNA at 3'-end (Danio rerio)
intronless pre-mRNA cleavage complex [nucleoplasm] (Danio rerio)
pabpn1 [nucleoplasm] (Danio rerio)
upstream mRNA fragment:CPSF:PAP:PABPN1 complex [nucleoplasm] (Danio rerio)
pabpn1 [nucleoplasm] (Danio rerio)
External Reference Information
External Reference
UniProt:Q6NUT4
Gene Names
pabpn1
Reference Genes
BioGPS Gene:406543 pabpn1
ENSEMBL:ENSDARG00000045373
KEGG:dre:406543 pabpn1
Monarch:406543 pabpn1
NCBI Gene:406543 pabpn1
UCSC:Q6NUT4 pabpn1
Reference Transcript
RefSeq:NM_001105132.2 pabpn1
RefSeq:NM_213259.2 pabpn1
Other Identifiers
13149739
406543
A_15_P102344
A_15_P104259
A_15_P107641
A_15_P118551
A_15_P449010
A_15_P580172
A_15_P635681
A_15_P727161
A_15_P750666
A_15_P768466
BC079522
CJ008920
CJ008921
CJ008922
CJ008923
CJ008924
CUST_4559_PI428451953
CUST_4560_PI428451953
CUST_4561_PI428451953
CUST_4564_PI428451958
DRER09504
DRER17808
DRER26464
DRER34771
DRER39452
ENSDART00000066722
ENSDART00000066722_1
ENSDART00000066722_2
ENSDART00000109088
GO:0003676
GO:0003723
GT_Spec_NM_001105132.2_247480
GT_Xhyb_NM_213259.2_247485
GT_Xhyb_XM_005162637.1_215325
JP009318
JP009319
JP009320
JP009321
JP009322
LOLS10869
MADDr01008864
NM_213259
OTTDART00000028976
OTTDART00000028978
Participates
as a component of
CBCA:polyadenylated m7GpppN-RNA:PABPN1 [nucleoplasm] (Danio rerio)
Ub-K63-CPA:PABPN1:Spliceosomal A complex (pre-mRNA polyadenylated at intronic PAS) [nucleoplasm] (Danio rerio)
Ub-K63-CPA:PABPN1:Spliceosomal A complex (pre-mRNA polyadenylated at proximal 3'UTR PAS) [nucleoplasm] (Danio rerio)
Ub-K63-CPA:PABPN1:Spliceosomal A complex (pre-mRNA polyadenylated at distal 3'UTR PAS) [nucleoplasm] (Danio rerio)
upstream mRNA fragment:CPSF:PAP:PABPN1 complex [nucleoplasm] (Danio rerio)
intronless pre-mRNA cleavage complex [nucleoplasm] (Danio rerio)
Cleavage and Polyadenylation Complex [nucleoplasm] (Danio rerio)
as an input of
PABPN1-stimulated PAPOL synthesizes polyA tail at distal 3'UTR PAS (Danio rerio)
PABPN1-stimulated PAPOL synthesizes polyA tail at intronic PAS (Danio rerio)
PABPN1-stimulated PAPOL synthesizes polyA tail at proximal 3'UTR PAS (Danio rerio)
Inferred From
PABPN1 [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
NP_001098602.1
,
NP_998424.1
ENSEMBL
ENSDARP00000066721
,
ENSDARG00000045373
,
ENSDART00000066722
ZFIN
ZDB-GENE-040426-2401
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