Reactome | si:dkey-23a13.22 [nucleoplasm]

si:dkey-23a13.22 [nucleoplasm]

Stable Identifier

R-DRE-6782561

Type

Protein [EntityWithAccessionedSequence]

Species

Danio rerio

Compartment

nucleoplasm

Synonyms

Ub-HIST1H2BA, A0A140LG54

Locations in the PathwayBrowser

Expand all

Metabolism of proteins (Danio rerio)

- Post-translational protein modification (Danio rerio)
  - Deubiquitination (Danio rerio)
    - Ub-specific processing proteases (Danio rerio)
      - USP3,SAGA deubiquitinate Histone H2A,H2B (Danio rerio)
        
        USP3,SAGA:Ub-histone H2A, Ub-histone H2B [nucleoplasm] (Danio rerio)
        
        Ub-histone H2A, Ub-histone H2B [nucleoplasm] (Danio rerio)
        
        Ub-histone H2B [nucleoplasm] (Danio rerio)
        
        Ub-histone HIST1H2B [nucleoplasm] (Danio rerio)
        
        Homologues of Ub-HIST1H2BA [nucleoplasm] (Danio rerio)
        
        si:dkey-23a13.22 [nucleoplasm] (Danio rerio)
      - USP49 deubiquitinates H2B (Danio rerio)
        
        USP49:Ub-histone H2B [nucleoplasm] (Danio rerio)
        
        Ub-histone H2B [nucleoplasm] (Danio rerio)
        
        Ub-histone HIST1H2B [nucleoplasm] (Danio rerio)
        
        Homologues of Ub-HIST1H2BA [nucleoplasm] (Danio rerio)
        
        si:dkey-23a13.22 [nucleoplasm] (Danio rerio)
  - Protein ubiquitination (Danio rerio)
    - E3 ubiquitin ligases ubiquitinate target proteins (Danio rerio)
      - RNF20:RNF40 monoubiquitinates Histone H2B (Danio rerio)
        
        Ub-histone HIST1H2B [nucleoplasm] (Danio rerio)
        
        Homologues of Ub-HIST1H2BA [nucleoplasm] (Danio rerio)
        
        si:dkey-23a13.22 [nucleoplasm] (Danio rerio)

External Reference Information

External Reference

UniProt:A0A140LG54

Gene Names

si:dkey-23a13.22

Reference Genes

BioGPS Gene:100536401 si:dkey-23a13.22

ENSEMBL:ENSDARG00000105384

Monarch:100536401 si:dkey-23a13.22

NCBI Gene:100536401 si:dkey-23a13.22

Reference Transcript

RefSeq:XM_005172159.3 si:dkey-23a13.22

Other Identifiers

100536401

13225469

13280484

13285292

A_15_P199623

DRER36165

ENSDART00000074292

ENSDART00000074292_x_1

ENSDART00000074292_x_2

GO:0000786

GO:0003674

GO:0003677

GO:0005575

GO:0005622

GO:0005694

GO:0032991

GO:0043226

GO:0046982

GT_Spec_XM_005172159.1_340865

XM_685118

Participates

as a member of

Homologues of Ub-HIST1H2BA [nucleoplasm] (Danio rerio)

Other forms of this molecule

si:dkey-23a13.22 [nucleoplasm]

Inferred From

Ub-HIST1H2BA [nucleoplasm] (Homo sapiens)

Modified Residues

Name

ubiquitinylated lysine at 120 (in Homo sapiens)

Coordinate

120

PsiMod Name

ubiquitinylated lysine [MOD:01148]

PsiMod Definition

A protein modification that effectively crosslinks the N6-amino of a peptidyl lysine with the carboxyl-terminal glycine of a ubiquitin.

Cross References

RefSeq

XP_005172216.1

Target Pathogen

5b354852be737e166372ec68

Ensembl

ENSDART00000172790, ENSDARP00000142232, ENSDARG00000105384