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lig3 [nucleoplasm]
Stable Identifier
R-DRE-53789
Type
Protein [EntityWithAccessionedSequence]
Species
Danio rerio
Compartment
nucleoplasm
Synonyms
LIG3, F1QJL4
Locations in the PathwayBrowser
Expand all
DNA Repair (Danio rerio)
Base Excision Repair (Danio rerio)
Resolution of Abasic Sites (AP sites) (Danio rerio)
APEX1-Independent Resolution of AP Sites via the Single Nucleotide Replacement Pathway (Danio rerio)
LIG3 ligates NEIL1,NEIL2-generated single strand break (Danio rerio)
NEIL1,NEIL2:PNKP:POLB:LIG3:XRCC1:SSB-dsDNA [nucleoplasm] (Danio rerio)
LIG3:XRCC1 [nucleoplasm] (Danio rerio)
lig3 [nucleoplasm] (Danio rerio)
NEIL1,NEIL2:PNKP:POLB:LIG3:XRCC1:dsDNA [nucleoplasm] (Danio rerio)
LIG3:XRCC1 [nucleoplasm] (Danio rerio)
lig3 [nucleoplasm] (Danio rerio)
lig3 [nucleoplasm] (Danio rerio)
LIG3:XRCC1 and PNKP bind NEIL1,NEIL2:POLB:SSB(3'Pi)-gap-dsDNA (Danio rerio)
LIG3:XRCC1 [nucleoplasm] (Danio rerio)
lig3 [nucleoplasm] (Danio rerio)
NEIL1,NEIL2:PNKP:POLB:LIG3:XRCC1:SSB(3'Pi)-gap-dsDNA [nucleoplasm] (Danio rerio)
LIG3:XRCC1 [nucleoplasm] (Danio rerio)
lig3 [nucleoplasm] (Danio rerio)
PNKP hydrolyzes the terminal 3'Pi at the NEIL1,NEIL2-generated single strand break (SSB) (Danio rerio)
NEIL1,NEIL2:PNKP:POLB:LIG3:XRCC1:SSB(3'Pi)-gap-dsDNA [nucleoplasm] (Danio rerio)
LIG3:XRCC1 [nucleoplasm] (Danio rerio)
lig3 [nucleoplasm] (Danio rerio)
NEIL1,NEIL2:POLB:LIG3:XRCC1:PNKP:SSB-gap-dsDNA [nucleoplasm] (Danio rerio)
LIG3:XRCC1 [nucleoplasm] (Danio rerio)
lig3 [nucleoplasm] (Danio rerio)
POLB incorporates a single nucleotide in place of excised AP residue in NEIL1,NEIL2-mediated AP site resolution (Danio rerio)
NEIL1,NEIL2:PNKP:POLB:LIG3:XRCC1:SSB-dsDNA [nucleoplasm] (Danio rerio)
LIG3:XRCC1 [nucleoplasm] (Danio rerio)
lig3 [nucleoplasm] (Danio rerio)
NEIL1,NEIL2:POLB:LIG3:XRCC1:PNKP:SSB-gap-dsDNA [nucleoplasm] (Danio rerio)
LIG3:XRCC1 [nucleoplasm] (Danio rerio)
lig3 [nucleoplasm] (Danio rerio)
Resolution of AP sites via the single-nucleotide replacement pathway (Danio rerio)
LIG3-mediated DNA ligation via the single-nucleotide replacement pathway (Danio rerio)
LIG3:XRCC1:POLB:SSB-dsDNA [nucleoplasm] (Danio rerio)
LIG3:XRCC1 [nucleoplasm] (Danio rerio)
lig3 [nucleoplasm] (Danio rerio)
LIG3:XRCC1:POLB:dsDNA [nucleoplasm] (Danio rerio)
LIG3:XRCC1 [nucleoplasm] (Danio rerio)
lig3 [nucleoplasm] (Danio rerio)
lig3 [nucleoplasm] (Danio rerio)
Recruitment of LIG3:XRCC1 complex to the site of repair by POLB (Danio rerio)
LIG3:XRCC1 [nucleoplasm] (Danio rerio)
lig3 [nucleoplasm] (Danio rerio)
LIG3:XRCC1:POLB:SSB-gap-dsDNA [nucleoplasm] (Danio rerio)
LIG3:XRCC1 [nucleoplasm] (Danio rerio)
lig3 [nucleoplasm] (Danio rerio)
Resynthesis of excised residue by POLB (Danio rerio)
LIG3:XRCC1:POLB:SSB-dsDNA [nucleoplasm] (Danio rerio)
LIG3:XRCC1 [nucleoplasm] (Danio rerio)
lig3 [nucleoplasm] (Danio rerio)
LIG3:XRCC1:POLB:SSB-gap-dsDNA [nucleoplasm] (Danio rerio)
LIG3:XRCC1 [nucleoplasm] (Danio rerio)
lig3 [nucleoplasm] (Danio rerio)
DNA Double-Strand Break Repair (Danio rerio)
Homology Directed Repair (Danio rerio)
HDR through MMEJ (alt-NHEJ) (Danio rerio)
LIG3 ligates remaining SSBs in MMEJ (Danio rerio)
Extended microhomologous 3'-ssDNA overhangs-DSB:MRN:RBBP8:LIG3:XRCC1 [nucleoplasm] (Danio rerio)
LIG3:XRCC1 [nucleoplasm] (Danio rerio)
lig3 [nucleoplasm] (Danio rerio)
LIG3:XRCC1 [nucleoplasm] (Danio rerio)
lig3 [nucleoplasm] (Danio rerio)
lig3 [nucleoplasm] (Danio rerio)
MRN recruits LIG3:XRCC1 to MMEJ sites (Danio rerio)
Extended microhomologous 3'-ssDNA overhangs-DSB:MRN:RBBP8:LIG3:XRCC1 [nucleoplasm] (Danio rerio)
LIG3:XRCC1 [nucleoplasm] (Danio rerio)
lig3 [nucleoplasm] (Danio rerio)
LIG3:XRCC1 [nucleoplasm] (Danio rerio)
lig3 [nucleoplasm] (Danio rerio)
Nucleotide Excision Repair (Danio rerio)
Transcription-Coupled Nucleotide Excision Repair (TC-NER) (Danio rerio)
Gap-filling DNA repair synthesis and ligation in TC-NER (Danio rerio)
Ligation of newly synthesized repair patch to incised DNA in TC-NER (Danio rerio)
LIG1,LIG3:XRCC1 [nucleoplasm] (Danio rerio)
LIG3:XRCC1 [nucleoplasm] (Danio rerio)
lig3 [nucleoplasm] (Danio rerio)
External Reference Information
External Reference
UniProt:F1QJL4
Gene Names
lig3
Reference Genes
BioGPS Gene:563276 lig3
ENSEMBL:ENSDARG00000052553
Monarch:563276 lig3
NCBI Gene:563276 lig3
UCSC:F1QJL4 lig3
Reference Transcript
RefSeq:NM_001030174.2 lig3
RefSeq:XM_073950660.1 lig3
Other Identifiers
13199226
13199246
13304562
563276
A_15_P107839
A_15_P110881
A_15_P120117
A_15_P596242
CUST_28688_PI428451953
CUST_361_PI424165052
CUST_362_PI424165052
CUST_363_PI424165052
CUST_364_PI424165052
CUST_365_PI424165052
CUST_366_PI424165052
CUST_367_PI424165052
CUST_368_PI424165052
Dr.4675.1.A1_at
ENSDART00000074426
ENSDART00000074426_1
GO:0003677
GO:0003824
GO:0003909
GO:0003910
GO:0005524
GO:0006281
GO:0006310
GO:0008270
GO:0016874
GO:0071897
GO:0140097
GT_Spec_NM_001030174.2_261685
MADDr01003255
NM_001030174
XM_692690
XM_695512
ZV700S00005383
Participates
as a component of
LIG3:XRCC1 [nucleoplasm] (Danio rerio)
Inferred From
LIG3 [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
NP_001025345.2
,
XP_073806761.1
ENSEMBL
ENSDARP00000068915
,
ENSDART00000074426
,
ENSDARG00000052553
ZFIN
ZDB-GENE-030131-8453
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