Reactome | kdm4b [nucleoplasm]

kdm4b [nucleoplasm]

Stable Identifier

R-DRE-3214396

Type

Protein [EntityWithAccessionedSequence]

Species

Danio rerio

Compartment

nucleoplasm

Synonyms

KDM4B, Q1LUQ0

Locations in the PathwayBrowser

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DNA Repair (Danio rerio)

- DNA Double-Strand Break Repair (Danio rerio)
  - DNA Double Strand Break Response (Danio rerio)
    - Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks (Danio rerio)
      - ATM phosphorylates HERC2 (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1:RNF8:Zn2+:HERC2:PIAS4 [nucleoplasm] (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1:RNF8:Zn2+ [nucleoplasm] (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1 [nucleoplasm] (Danio rerio)
        
        KDM4A,B [nucleoplasm] (Danio rerio)
        
        kdm4b [nucleoplasm] (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1:RNF8:Zn2+:p-T4827-HERC2:PIAS4 [nucleoplasm] (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1:RNF8:Zn2+ [nucleoplasm] (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1 [nucleoplasm] (Danio rerio)
        
        KDM4A,B [nucleoplasm] (Danio rerio)
        
        kdm4b [nucleoplasm] (Danio rerio)
      - HERC2 facilitates UBE2N:UBE2V2 binding to RNF8 (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1:RNF8:Zn2+:SUMO1:p-T4827-HERC2:PIAS4 [nucleoplasm] (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1 [nucleoplasm] (Danio rerio)
        
        KDM4A,B [nucleoplasm] (Danio rerio)
        
        kdm4b [nucleoplasm] (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1:RNF8:Zn2+:SUMO1:p-T4827-HERC2:UBE2N:UBE2V2:PIAS4 [nucleoplasm] (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1 [nucleoplasm] (Danio rerio)
        
        KDM4A,B [nucleoplasm] (Danio rerio)
        
        kdm4b [nucleoplasm] (Danio rerio)
      - KDM4A,B bind H4K20Me2 (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1 [nucleoplasm] (Danio rerio)
        
        KDM4A,B [nucleoplasm] (Danio rerio)
        
        kdm4b [nucleoplasm] (Danio rerio)
        
        KDM4A,B [nucleoplasm] (Danio rerio)
        
        kdm4b [nucleoplasm] (Danio rerio)
      - PIAS4 SUMOylates HERC2 with SUMO1 at DNA DSBs (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1:RNF8:Zn2+:SUMO1:p-T4827-HERC2:PIAS4 [nucleoplasm] (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1 [nucleoplasm] (Danio rerio)
        
        KDM4A,B [nucleoplasm] (Danio rerio)
        
        kdm4b [nucleoplasm] (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1:RNF8:Zn2+:p-T4827-HERC2:PIAS4 [nucleoplasm] (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1:RNF8:Zn2+ [nucleoplasm] (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1 [nucleoplasm] (Danio rerio)
        
        KDM4A,B [nucleoplasm] (Danio rerio)
        
        kdm4b [nucleoplasm] (Danio rerio)
      - RNF168 binds DNA DSBs (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1:RNF8:Zn2+:SUMO1:p-T4827-HERC2:UBE2N:UBE2V2:PIAS4 [nucleoplasm] (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1 [nucleoplasm] (Danio rerio)
        
        KDM4A,B [nucleoplasm] (Danio rerio)
        
        kdm4b [nucleoplasm] (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1:RNF8:Zn2+:SUMO1:p-T4827-HERC2:UBE2N:UBE2V2:RNF168:PIAS4 [nucleoplasm] (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1:RNF8:Zn2+:SUMO1:p-T4827-HERC2:UBE2N:UBE2V2:PIAS4 [nucleoplasm] (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1 [nucleoplasm] (Danio rerio)
        
        KDM4A,B [nucleoplasm] (Danio rerio)
        
        kdm4b [nucleoplasm] (Danio rerio)
      - RNF8 and RNF168 ubiquitinate H2AFX (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:K63PolyUb-K14,K16,p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1:RNF8:Zn2+:SUMO1:p-T4827-HERC2:UBE2N:UBE2V2:RNF168:PIAS4 [nucleoplasm] (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:K63PolyUb-K14,K16,p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1 [nucleoplasm] (Danio rerio)
        
        KDM4A,B [nucleoplasm] (Danio rerio)
        
        kdm4b [nucleoplasm] (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1:RNF8:Zn2+:SUMO1:p-T4827-HERC2:UBE2N:UBE2V2:RNF168:PIAS4 [nucleoplasm] (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1:RNF8:Zn2+:SUMO1:p-T4827-HERC2:UBE2N:UBE2V2:PIAS4 [nucleoplasm] (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1 [nucleoplasm] (Danio rerio)
        
        KDM4A,B [nucleoplasm] (Danio rerio)
        
        kdm4b [nucleoplasm] (Danio rerio)
      - RNF8 and RNF168 ubiquitinate KDM4A,B (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:K63PolyUb-K14,K16,p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1:RNF8:Zn2+:SUMO1:p-T4827-HERC2:UBE2N:UBE2V2:RNF168:PIAS4 [nucleoplasm] (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:K63PolyUb-K14,K16,p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1 [nucleoplasm] (Danio rerio)
        
        KDM4A,B [nucleoplasm] (Danio rerio)
        
        kdm4b [nucleoplasm] (Danio rerio)
      - RNF8 binds phosphorylated MDC1 at DNA DSBs (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1 [nucleoplasm] (Danio rerio)
        
        KDM4A,B [nucleoplasm] (Danio rerio)
        
        kdm4b [nucleoplasm] (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1:RNF8:Zn2+ [nucleoplasm] (Danio rerio)
        
        DNA DSBs:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:p-S139-H2AFX,Me2K21-HIST1H4A-Nucleosome:p-5T-MDC1:KDM4A,B:p-S102-WHSC1 [nucleoplasm] (Danio rerio)
        
        KDM4A,B [nucleoplasm] (Danio rerio)
        
        kdm4b [nucleoplasm] (Danio rerio)

External Reference Information

External Reference

UniProt:Q1LUQ0

Gene Names

kdm4b

Reference Genes

BioGPS Gene:556504 kdm4b

ENSEMBL:ENSDARG00000099675

KEGG:dre:556504 kdm4b

Monarch:556504 kdm4b

NCBI Gene:556504 kdm4b

UCSC:Q1LUQ0 kdm4b

Reference Transcript

RefSeq:NM_001082805.1 kdm4b

Other Identifiers

13119911

13119933

556504

AL913284_R

A_15_P137491

A_15_P195706

A_15_P287846

A_15_P446740

A_15_P565222

A_15_P587787

A_15_P724626

CUST_4945_PI423952288

CUST_4946_PI423952288

CUST_4947_PI423952288

CUST_4948_PI423952288

CUST_4949_PI423952288

CUST_4950_PI423952288

CUST_4951_PI423952288

CUST_4952_PI423952288

CUST_6856_PI428451958

CUST_7474_PI428451953

DRER04189

DRER28699

DRER33332

Dr.18485.1.A1_at

Dr.18485.2.A1_a_at

ENSDART00000034084

ENSDART00000034084_1

ENSDART00000034084_2

GT_Spec_NM_001082805.1_63051

LOLS05732

LOLS14548

MADDr01006417

MADDr01013108

OTTDART00000017420

OTTDART00000030656_1

XM_679327

Participates

as an output of

KDM4B demethylates H3K9me3 on estrogen-responsive target enhancers (Danio rerio)

as an input of

ESR1:ESTG and KDM4B bind H3K9me3 target gene enhancers (Danio rerio)

as a component of

KDM4B-regulated genes:H3K9me3 nucleosome:ESR1:ESTG:KDM4B [nucleoplasm] (Danio rerio)

as a member of

Other forms of this molecule

kdm4b [nucleoplasm]

Inferred From

KDM4B [nucleoplasm] (Homo sapiens)

Cross References

RefSeq

NP_001076274.1

ENSEMBL

ENSDART00000181893, ENSDARG00000099675, ENSDART00000162523, ENSDARP00000156548, ENSDARP00000133766

ZFIN

ZDB-GENE-060503-664

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