Reactome | col1a1b [extracellular region]

col1a1b [extracellular region]

Stable Identifier

R-DRE-2468090

Type

Protein [EntityWithAccessionedSequence]

Species

Danio rerio

Compartment

extracellular region

Synonyms

5Hyl-COL3A1(154-948), Q6PEI9

Locations in the PathwayBrowser

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Extracellular matrix organization (Danio rerio)

- Degradation of the extracellular matrix (Danio rerio)
  - Collagen degradation (Danio rerio)
    - Collagen type III degradation by MMP1,8,9,13 (Danio rerio)
      - Cleaved collagen type III fibril [extracellular region] (Danio rerio)
        
        Cleaved tropocollagen type III [extracellular region] (Danio rerio)
        
        Cleaved collagen alpha-1(III) chains [extracellular region] (Danio rerio)
        
        Homologues of 5Hyl-COL3A1(154-948) [extracellular region] (Danio rerio)
        
        col1a1b [extracellular region] (Danio rerio)
    - Collagen type III degradation by MMP14 (Danio rerio)
      - Cleaved collagen type III fibril [extracellular region] (Danio rerio)
        
        Cleaved tropocollagen type III [extracellular region] (Danio rerio)
        
        Cleaved collagen alpha-1(III) chains [extracellular region] (Danio rerio)
        
        Homologues of 5Hyl-COL3A1(154-948) [extracellular region] (Danio rerio)
        
        col1a1b [extracellular region] (Danio rerio)
    - Collagen type III degradation by MMP15 (Danio rerio)
      - Cleaved collagen type III fibril [extracellular region] (Danio rerio)
        
        Cleaved tropocollagen type III [extracellular region] (Danio rerio)
        
        Cleaved collagen alpha-1(III) chains [extracellular region] (Danio rerio)
        
        Homologues of 5Hyl-COL3A1(154-948) [extracellular region] (Danio rerio)
        
        col1a1b [extracellular region] (Danio rerio)
    - Gelatin degradation by MMP1, 2, 3, 7, 8, 9, 12, 13 (Danio rerio)
      - Cleaved collagen fibrils [extracellular region] (Danio rerio)
        
        Cleaved collagen type III fibril [extracellular region] (Danio rerio)
        
        Cleaved tropocollagen type III [extracellular region] (Danio rerio)
        
        Cleaved collagen alpha-1(III) chains [extracellular region] (Danio rerio)
        
        Homologues of 5Hyl-COL3A1(154-948) [extracellular region] (Danio rerio)
        
        col1a1b [extracellular region] (Danio rerio)

External Reference Information

External Reference

UniProt:Q6PEI9

Gene Names

col1a1b

Reference Genes

BioGPS Gene:325675 col1a1b

CTD Gene:325675 col1a1b

ENSEMBL:ENSDARG00000035809

KEGG:dre:325675 col1a1b

Monarch:325675 col1a1b

NCBI Gene:325675 col1a1b

UCSC:Q6PEI9 col1a1b

Reference Transcript

RefSeq:NM_201478.1 col1a1b

Participates

as a member of

Homologues of 5Hyl-COL3A1(154-948) [extracellular region] (Danio rerio)

Other forms of this molecule

col1a1b [endoplasmic reticulum lumen]

col1a1b [extracellular region]

Inferred From

5Hyl-COL3A1(154-948) [extracellular region] (Homo sapiens)

Modified Residues

Name

(2S,5R)-5-hydroxylysine at unknown position

PsiMod Name

(2S,5R)-5-hydroxylysine

PsiMod Definition

A protein modification that effectively converts an L-lysine residue to 5-hydroxy-L-lysine.

Cross References

RefSeq

NP_958886.1

ZFIN

ZDB-GENE-030131-4400

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