UniProt:P62316 SNRPD2

chain
  • initiator methionine:1
  • chain:2-118
checksum D986059D82B7E045
comment
  • FUNCTION Plays a role in pre-mRNA splicing as a core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome (PubMed:11991638, PubMed:18984161, PubMed:19325628, PubMed:23333303, PubMed:25555158, PubMed:26912367, PubMed:28076346, PubMed:28502770, PubMed:28781166, PubMed:32494006). Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes (PubMed:11991638, PubMed:28076346, PubMed:28502770, PubMed:28781166). As a component of the minor spliceosome, involved in the splicing of U12-type introns in pre-mRNAs (PubMed:15146077).SUBUNIT Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome (PubMed:11991638, PubMed:19325628, PubMed:21516107, PubMed:25555158, PubMed:26912367, PubMed:28076346, PubMed:28502770, PubMed:28781166, PubMed:32494006, PubMed:36797247). Most spliceosomal snRNPs contain a common set of Sm proteins, SNRPB, SNRPD1, SNRPD2, SNRPD3, SNRPE, SNRPF and SNRPG that assemble in a heptameric protein ring on the Sm site of the small nuclear RNA to form the core snRNP (PubMed:10025403, PubMed:19325628, PubMed:21516107, PubMed:25555158, PubMed:26912367, PubMed:28076346, PubMed:28502770, PubMed:28781166). Component of the U1 snRNP (PubMed:19325628, PubMed:25555158). The U1 snRNP is composed of the U1 snRNA and the 7 core Sm proteins SNRPB, SNRPD1, SNRPD2, SNRPD3, SNRPE, SNRPF and SNRPG, and at least three U1 snRNP-specific proteins SNRNP70/U1-70K, SNRPA/U1-A and SNRPC/U1-C (PubMed:19325628, PubMed:25555158). Component of the U4/U6-U5 tri-snRNP complex composed of the U4, U6 and U5 snRNAs and at least PRPF3, PRPF4, PRPF6, PRPF8, PRPF31, SNRNP200, TXNL4A, SNRNP40, SNRPB, SNRPD1, SNRPD2, SNRPD3, SNRPE, SNRPF, SNRPG, DDX23, CD2BP2, PPIH, SNU13, EFTUD2, SART1 and USP39, plus LSM2, LSM3, LSM4, LSM5, LSM6, LSM7 and LSM8 (PubMed:26912367). Component of the minor spliceosome, which splices U12-type introns (PubMed:15146077, PubMed:33509932). Part of the SMN-Sm complex that contains SMN1, GEMIN2/SIP1, DDX20/GEMIN3, GEMIN4, GEMIN5, GEMIN6, GEMIN7, GEMIN8, STRAP/UNRIP and the Sm proteins SNRPB, SNRPD1, SNRPD2, SNRPD3, SNRPE, SNRPF and SNRPG; catalyzes core snRNPs assembly (PubMed:16314521). Forms a 6S pICln-Sm complex composed of CLNS1A/pICln, SNRPD1, SNRPD2, SNRPE, SNRPF and SNRPG; ring-like structure where CLNS1A/pICln mimics additional Sm proteins and which is unable to assemble into the core snRNP. Interacts with SMN1; the interaction is direct (PubMed:21816274). Interacts with GEMIN2; the interaction is direct (PubMed:21816274, PubMed:31799625). Interacts with SNRPD1; the interaction is direct (PubMed:21816274, PubMed:31799625). Interacts with SNRPF; the interaction is direct (PubMed:21816274, PubMed:31799625).INTERACTION SMN-mediated assembly into core snRNPs occurs in the cytosol before SMN-mediated transport to the nucleus to be included in spliceosomes.ALTERNATIVE PRODUCTS In the autoimmune disease systemic lupus erythematosus, antinuclear antibodies are developed with Sm specificity.SIMILARITY Belongs to the snRNP core protein family.
crossReference
databaseName UniProt
dbId 71900
description
  • recommendedName: Small nuclear ribonucleoprotein Sm D2 shortName: Sm-D2 alternativeName: snRNP core protein D2
displayName UniProt:P62316 SNRPD2
geneName
  • SNRPD2
  • SNRPD1
identifier P62316
isSequenceChanged false
keyword
  • 3D-structure
  • Acetylation
  • Alternative splicing
  • Cytoplasm
  • Direct protein sequencing
  • Isopeptide bond
  • mRNA processing
  • mRNA splicing
  • Nucleus
  • Phosphoprotein
  • Proteomics identification
  • Reference proteome
  • Ribonucleoprotein
  • Spliceosome
  • Ubl conjugation
modified [InstanceEdit:9963647] Weiser, Joel, 2025-08-15
moleculeType Protein
name
  • SNRPD2
otherIdentifier
  • 11757666_x_at
  • 16873391
  • 200826_PM_at
  • 200826_at
  • 35270_at
  • 3865569
  • 3865570
  • 3865571
  • 3865572
  • 3865573
  • 3865575
  • 3865576
  • 3865577
  • 3865578
  • 3865579
  • 3865580
  • 3865581
  • 3865582
  • 3865583
  • 6633
  • 8037642
  • A_24_P74160
  • GE58956
  • GO:0000245
  • GO:0000387
  • GO:0000398
  • GO:0003723
  • GO:0005515
  • GO:0005634
  • GO:0005654
  • GO:0005681
  • GO:0005682
  • GO:0005684
  • GO:0005685
  • GO:0005686
  • GO:0005687
  • GO:0005689
  • GO:0005737
  • GO:0005829
  • GO:0006397
  • GO:0008380
  • GO:0016071
  • GO:0030532
  • GO:0034709
  • GO:0034715
  • GO:0034719
  • GO:0036261
  • GO:0046540
  • GO:0065003
  • GO:0070062
  • GO:0071005
  • GO:0071007
  • GO:0071011
  • GO:0071013
  • GO:0097525
  • GO:1903241
  • GO:1990904
  • HMNXSV003005449
  • ILMN_1771060
  • ILMN_2369785
  • PH_hs_0019804
  • PH_hs_0033284
  • TC19001628.hg
  • U15008_at
  • g7242206_3p_at
physicalEntity
referenceDatabase [ReferenceDatabase:2] UniProt
referenceGene
referenceTranscript
schemaClass ReferenceGeneProduct
secondaryIdentifier
  • SMD2_HUMAN
  • A8K797
  • J3KPM5
  • P43330
sequenceLength 118
species [Species:48887] Homo sapiens
stId uniprot:P62316
url http://purl.uniprot.org/uniprot/P62316

Referrals

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