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3x4Hyp-GlcGalHyl-COL6A3(26-?) [extracellular region]
Stable Identifier
R-HSA-2470127
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
extracellular region
Synonyms
4-Hyp Glu-Gal-Hyl collagen alpha-3(VI) chain N-term fragment
Locations in the PathwayBrowser
Expand all
Extracellular matrix organization (Homo sapiens)
Degradation of the extracellular matrix (Homo sapiens)
Collagen degradation (Homo sapiens)
Collagen type VI degradation by MMP2,9,11 (Homo sapiens)
Cleaved collagen type VI fibril [extracellular region] (Homo sapiens)
Cleaved tropocollagen type VI tetramer [extracellular region] (Homo sapiens)
Cleaved tropocollagen type VI dimer [extracellular region] (Homo sapiens)
Cleaved tropocollagen type VI [extracellular region] (Homo sapiens)
Cleaved collagen alpha 3-6(VI) [extracellular region] (Homo sapiens)
Cleaved collagen alpha-3(VI) chains [extracellular region] (Homo sapiens)
3x4Hyp-GlcGalHyl-COL6A3(26-?) [extracellular region] (Homo sapiens)
External Reference Information
External Reference
UniProt:P12111 COL6A3
Gene Names
COL6A3
Chain
signal peptide:1-25, chain:26-3177
Reference Genes
BioGPS Gene:1293 COL6A3
COSMIC (genes):COL6A3 COL6A3
CTD Gene:1293 COL6A3
dbSNP Gene:1293 COL6A3
ENSEMBL:ENSG00000163359 COL6A3
HGNC:2213 COL6A3
KEGG Gene (Homo sapiens):1293 COL6A3
Monarch:1293 COL6A3
NCBI Gene:1293 COL6A3
OMIM:120250 COL6A3
UCSC:P12111 COL6A3
Reference Transcript
RefSeq:NM_057166.4 COL6A3
RefSeq:NM_057164.4 COL6A3
RefSeq:NM_004369.3 COL6A3
RefSeq:XM_017003303.1 COL6A3
RefSeq:NM_057167.3 COL6A3
RefSeq:NM_057165.4 COL6A3
Other Identifiers
0007050452
11741710_a_at
11743964_a_at
11753972_a_at
1293
16909828
201438_PM_at
201438_at
2605322
2605323
2605324
2605325
2605326
2605327
2605328
2605329
2605330
2605333
2605334
2605335
2605336
2605337
2605338
2605339
2605340
2605342
2605346
2605347
2605348
2605350
2605351
2605353
2605354
2605355
2605356
2605358
2605359
2605364
2605366
2605367
2605368
2605369
2605370
2605371
2605373
2605374
2605375
2605376
2605377
2605378
2605379
2605380
2605381
2605382
2605383
2605384
2605385
2605386
2605387
2605390
2605391
2605395
2605396
2605398
2605399
2605400
2605408
38077_at
8059905
A_33_P3210488
A_33_P3280385
GE59766
GO:0003674
GO:0004867
GO:0005198
GO:0005515
GO:0005575
GO:0005576
GO:0005581
GO:0005589
GO:0005615
GO:0005622
GO:0005737
GO:0005783
GO:0005788
GO:0005886
GO:0007155
GO:0007517
GO:0008150
GO:0010466
GO:0010951
GO:0030020
GO:0030234
GO:0030312
GO:0030414
GO:0031012
GO:0032991
GO:0042383
GO:0043226
GO:0048856
GO:0062023
GO:0070062
GO:1903561
HMNXSV003013137
HMNXSV003054852
ILMN_1706643
ILMN_2307861
M20778_s_at
PH_hs_0023170
TC02002905.hg
X52022_at
g4758027_3p_at
Participates
as a member of
Cleaved collagen alpha-3(VI) chains [extracellular region] (Homo sapiens)
Other forms of this molecule
3x4Hyp-GalHyl-COL6A3(26-3176) [endoplasmic reticulum lumen]
3x4Hyp-3Hyp-GlcGalHyl-COL6A3(26-3176) [endoplasmic reticulum lumen]
3x4Hyp-3Hyp-GalHyl-COL6A3(26-3176) [endoplasmic reticulum lumen]
3x4Hyp-GlcGalHyl-COL6A3(26-3176) [endoplasmic reticulum lumen]
GalHyl-COL6A3(26-3176) [endoplasmic reticulum lumen]
GlcGalHyl-COL6A3(26-3176) [endoplasmic reticulum lumen]
COL6A3(26-3176) [endoplasmic reticulum lumen]
3x4Hyp-COL6A3(26-3176) [endoplasmic reticulum lumen]
3x4Hyp-3Hyp-COL6A3(26-3176) [endoplasmic reticulum lumen]
3x4Hyp-5Hyl-COL6A3(26-3176) [endoplasmic reticulum lumen]
3x4Hyp-3Hyp-5Hyl-COL6A3(26-3176) [endoplasmic reticulum lumen]
5Hyl-COL6A3(26-3176) [endoplasmic reticulum lumen]
3x4Hyp-3Hyp-5Hyl-COL6A3(?-3176) [extracellular region]
3x4Hyp-3Hyp-GalHyl-COL6A3(26-?) [extracellular region]
GlcGalHyl-COL6A3(?-3176) [extracellular region]
5Hyl-COL6A3(?-3176) [extracellular region]
3x4Hyp-3Hyp-GlcGalHyl-COL6A3(?-3176) [extracellular region]
3x4Hyp-5Hyl-COL6A3(26-?) [extracellular region]
3x4Hyp-3Hyp-COL6A3(26-?) [extracellular region]
GalHyl-COL6A3(26-?) [extracellular region]
3x4Hyp-5Hyl-COL6A3(?-3176) [extracellular region]
3x4Hyp-3Hyp-COL6A3(?-3176) [extracellular region]
3x4Hyp-3Hyp-GalHyl-COL6A3(?-3176) [extracellular region]
GlcGalHyl-COL6A3(26-?) [extracellular region]
3x4Hyp-3Hyp-GlcGalHyl-COL6A3(26-?) [extracellular region]
COL6A3(26-?) [extracellular region]
GalHyl-COL6A3(?-3176) [extracellular region]
COL6A3(?-3176) [extracellular region]
3x4Hyp-GalHyl-COL6A3(?-3176) [extracellular region]
3x4Hyp-COL6A3(?-3176) [extracellular region]
5Hyl-COL6A3(26-?) [extracellular region]
3x4Hyp-GlcGalHyl-COL6A3(?-3176) [extracellular region]
3x4Hyp-COL6A3(26-?) [extracellular region]
3x4Hyp-3Hyp-5Hyl-COL6A3(26-?) [extracellular region]
3x4Hyp-GalHyl-COL6A3(26-?) [extracellular region]
3x4Hyp-3Hyp-GlcGalHyl-COL6A3(26-3176) [extracellular region]
5Hyl-COL6A3(26-3176) [extracellular region]
GlcGalHyl-COL6A3(26-3176) [extracellular region]
3x4Hyp-COL6A3(26-3176) [extracellular region]
3x4Hyp-3Hyp-5Hyl-COL6A3(26-3176) [extracellular region]
3x4Hyp-GlcGalHyl-COL6A3(26-3176) [extracellular region]
3x4Hyp-5Hyl-COL6A3(26-3176) [extracellular region]
3x4Hyp-3Hyp-GalHyl-COL6A3(26-3176) [extracellular region]
3x4Hyp-GalHyl-COL6A3(26-3176) [extracellular region]
COL6A3(26-3176) [extracellular region]
3x4Hyp-3Hyp-COL6A3(26-3176) [extracellular region]
GalHyl-COL6A3(26-3176) [extracellular region]
Inferred To
Col6a3 [extracellular region]
(Mus musculus)
3x4Hyp-GlcGalHyl-COL6A3(26-?) [extracellular region]
(Caenorhabditis elegans)
3x4Hyp-GlcGalHyl-COL6A3(26-?) [extracellular region]
(Dictyostelium discoideum)
COL6A3 [extracellular region]
(Bos taurus)
COL6A3 [extracellular region]
(Sus scrofa)
Modified Residues
Name
(2S,4R)-4-hydroxyproline at unknown position
PsiMod Name
(2S,4R)-4-hydroxyproline
PsiMod Definition
A protein modification that effectively converts an L-proline residue to 4-hydroxy-L-proline
Name
(2S,4R)-4-hydroxyproline at unknown position
PsiMod Name
(2S,4R)-4-hydroxyproline
PsiMod Definition
A protein modification that effectively converts an L-proline residue to 4-hydroxy-L-proline
Name
(2S,4R)-4-hydroxyproline at unknown position
PsiMod Name
(2S,4R)-4-hydroxyproline
PsiMod Definition
A protein modification that effectively converts an L-proline residue to 4-hydroxy-L-proline
Name
O5-glucosylgalactosyl-L-hydroxylysine at unknown position
PsiMod Name
O5-glucosylgalactosyl-L-hydroxylysine
PsiMod Definition
A protein modification that effectively converts an L-lysine residue to O5-glucosylgalactosyl-L-hydroxylysine.
Cross References
RefSeq
XP_016858792.1
,
NP_476508.2
,
NP_476505.3
,
NP_476507.3
,
NP_004360.2
,
NP_476506.3
OpenTargets
ENSG00000163359
GeneCards
P12111
HPA
ENSG00000163359-COL6A3
Ensembl
ENSP00000375860
,
ENST00000392004
,
ENSP00000418285
,
ENSP00000375861
,
ENSP00000295550
,
ENST00000295550
,
ENST00000472056
,
ENSG00000163359
,
ENST00000392003
,
ENST00000353578
,
ENSP00000315873
PRO
P12111
Pharos - Targets
P12111
Orphanet
15780
PDB
2KNT
,
1KUN
,
1KNT
,
1KTH
,
6SNK
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