Reactome | rbm25b [nucleoplasm]

rbm25b [nucleoplasm]

Stable Identifier

R-DRE-9770250

Type

Protein [EntityWithAccessionedSequence]

Species

Danio rerio

Compartment

nucleoplasm

Synonyms

RBM25, A8DZA0

Locations in the PathwayBrowser

Expand all

Metabolism of RNA (Danio rerio)

- Processing of Capped Intron-Containing Pre-mRNA (Danio rerio)
  - mRNA 3'-end processing (Danio rerio)
    - mRNA Polyadenylation (Danio rerio)
      - Core CPA complex binds capped pre-mRNA (Danio rerio)
        
        Core CPA complex:Spliceosomal A complex (uncleaved pre-mRNA) [nucleoplasm] (Danio rerio)
        
        Spliceosomal A complex (capped, methylated pre-mRNA) [nucleoplasm] (Danio rerio)
        
        rbm25b [nucleoplasm] (Danio rerio)
        
        Spliceosomal A complex (capped, methylated pre-mRNA) [nucleoplasm] (Danio rerio)
        
        rbm25b [nucleoplasm] (Danio rerio)
      - PABPN1-stimulated PAPOL synthesizes polyA tail at distal 3'UTR PAS (Danio rerio)
        
        Ub-K63-CPA:PABPN1:Spliceosomal A complex (pre-mRNA polyadenylated at distal 3'UTR PAS) [nucleoplasm] (Danio rerio)
        
        Spliceosomal A complex (pre-mRNA polyadenylated at distal 3'UTR PAS) [nucleoplasm] (Danio rerio)
        
        rbm25b [nucleoplasm] (Danio rerio)
        
        Ub-K63-CPA:Spliceosomal A complex (pre-mRNA cleaved at distal 3'UTR PAS) [nucleoplasm] (Danio rerio)
        
        Spliceosomal A complex (pre-mRNA cleaved at distal 3'UTR PAS) [nucleoplasm] (Danio rerio)
        
        rbm25b [nucleoplasm] (Danio rerio)
      - PABPN1-stimulated PAPOL synthesizes polyA tail at intronic PAS (Danio rerio)
        
        Ub-K63-CPA:PABPN1:Spliceosomal A complex (pre-mRNA polyadenylated at intronic PAS) [nucleoplasm] (Danio rerio)
        
        Spliceosomal A complex (pre-mRNA polyadenylated at intronic PAS) [nucleoplasm] (Danio rerio)
        
        rbm25b [nucleoplasm] (Danio rerio)
        
        Ub-K63-CPA:Spliceosomal A complex (pre-mRNA cleaved at intronic PAS) [nucleoplasm] (Danio rerio)
        
        Spliceosomal A complex (pre-mRNA cleaved at intronal PAS) [nucleoplasm] (Danio rerio)
        
        rbm25b [nucleoplasm] (Danio rerio)
      - PABPN1-stimulated PAPOL synthesizes polyA tail at proximal 3'UTR PAS (Danio rerio)
        
        Ub-K63-CPA:PABPN1:Spliceosomal A complex (pre-mRNA polyadenylated at proximal 3'UTR PAS) [nucleoplasm] (Danio rerio)
        
        Spliceosomal A complex (pre-mRNA polyadenylated at proximal 3'UTR PAS) [nucleoplasm] (Danio rerio)
        
        rbm25b [nucleoplasm] (Danio rerio)
        
        Ub-K63-CPA:Spliceosomal A complex (pre-mRNA cleaved at proximal 3'UTR PAS) [nucleoplasm] (Danio rerio)
        
        Spliceosomal A complex (pre-mRNA cleaved at proximal 3'UTR PAS) [nucleoplasm] (Danio rerio)
        
        rbm25b [nucleoplasm] (Danio rerio)
      - PP1 dephosphorylates RNA Pol II (Danio rerio)
        
        CPA:Spliceosomal A complex (uncleaved pre-mRNA) [nucleoplasm] (Danio rerio)
        
        Spliceosomal A complex (capped, methylated pre-mRNA) [nucleoplasm] (Danio rerio)
        
        rbm25b [nucleoplasm] (Danio rerio)
        
        CPA:Spliceosomal A complex (uncleaved pre-mRNA, RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Danio rerio)
        
        Spliceosomal A complex (RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Danio rerio)
        
        rbm25b [nucleoplasm] (Danio rerio)
      - RBBP6 activates CPSF complex (Danio rerio)
        
        CPA:Spliceosomal A complex (uncleaved pre-mRNA, RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Danio rerio)
        
        Spliceosomal A complex (RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Danio rerio)
        
        rbm25b [nucleoplasm] (Danio rerio)
        
        Ub-K63-CPA:Spliceosomal A complex (uncleaved pre-mRNA, RNA Pol II Ser2 dephosphorylated) [nucleoplasm] (Danio rerio)
        
        Spliceosomal A complex (RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Danio rerio)
        
        rbm25b [nucleoplasm] (Danio rerio)

External Reference Information

External Reference

UniProt:A8DZA0

Gene Names

rbm25b

Reference Genes

BioGPS Gene:327336 rbm25b

CTD Gene:327336 rbm25b

ENSEMBL:ENSDARG00000006395

Monarch:327336 rbm25b

NCBI Gene:327336 rbm25b

UCSC:A8DZA0 rbm25b

Reference Transcript

RefSeq:XM_009295006.4 rbm25b

Other Identifiers

13106403

13278806

327336

A_15_P109475

A_15_P150026

A_15_P225881

A_15_P726701

CUST_26570_PI428451953

CUST_26571_PI428451953

CUST_5084_PI428451958

DRER03581

DRER20483

DRER20738

DRER45622

Dr.6398.1.S1_at

ENSDART00000027836

ENSDART00000027836_1

ENSDART00000027836_2

ENSDART00000114407

GO:0003676

GO:0003723

GT_Spec_NM_199790.1_322405

LOLS12676

MADDr01000366

MADDr01012195

NM_199790

OTTDART00000023300

XM_688897

Participates

as a component of

Inferred From

RBM25 [nucleoplasm] (Homo sapiens)

Cross References

RefSeq

XP_009293281.1

ENSEMBL

ENSDART00000027836, ENSDARG00000006395, ENSDARP00000006694

ZFIN

ZDB-GENE-030131-5547