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puf60a [nucleoplasm]
Stable Identifier
R-DRE-8865910
Type
Protein [EntityWithAccessionedSequence]
Species
Danio rerio
Compartment
nucleoplasm
Synonyms
PUF60, F1QZ57
Locations in the PathwayBrowser
Expand all
Chromatin organization (Danio rerio)
ATP-dependent chromatin remodelers (Danio rerio)
CHD chromatin remodelers (Danio rerio)
CHD1 and CHD2 subfamily (Danio rerio)
CHD1:H3K4me3 interacts with post-initiation transcription complexes (Danio rerio)
CHD1:H3K4 nucleosome:FACT complex:U2 snRNP complex:PAF1C complex [nucleoplasm] (Danio rerio)
U2 snRNP [nucleoplasm] (Danio rerio)
puf60a [nucleoplasm] (Danio rerio)
U2 snRNP [nucleoplasm] (Danio rerio)
puf60a [nucleoplasm] (Danio rerio)
Metabolism of RNA (Danio rerio)
Processing of Capped Intron-Containing Pre-mRNA (Danio rerio)
mRNA 3'-end processing (Danio rerio)
mRNA Polyadenylation (Danio rerio)
Core CPA complex binds capped pre-mRNA (Danio rerio)
Core CPA complex:Spliceosomal A complex (uncleaved pre-mRNA) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (capped, methylated pre-mRNA) [nucleoplasm] (Danio rerio)
U2 snRNP [nucleoplasm] (Danio rerio)
puf60a [nucleoplasm] (Danio rerio)
Spliceosomal A complex (capped, methylated pre-mRNA) [nucleoplasm] (Danio rerio)
U2 snRNP [nucleoplasm] (Danio rerio)
puf60a [nucleoplasm] (Danio rerio)
PABPN1-stimulated PAPOL synthesizes polyA tail at distal 3'UTR PAS (Danio rerio)
Ub-K63-CPA:PABPN1:Spliceosomal A complex (pre-mRNA polyadenylated at distal 3'UTR PAS) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (pre-mRNA polyadenylated at distal 3'UTR PAS) [nucleoplasm] (Danio rerio)
U2 snRNP [nucleoplasm] (Danio rerio)
puf60a [nucleoplasm] (Danio rerio)
Ub-K63-CPA:Spliceosomal A complex (pre-mRNA cleaved at distal 3'UTR PAS) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (pre-mRNA cleaved at distal 3'UTR PAS) [nucleoplasm] (Danio rerio)
U2 snRNP [nucleoplasm] (Danio rerio)
puf60a [nucleoplasm] (Danio rerio)
PABPN1-stimulated PAPOL synthesizes polyA tail at intronic PAS (Danio rerio)
Ub-K63-CPA:PABPN1:Spliceosomal A complex (pre-mRNA polyadenylated at intronic PAS) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (pre-mRNA polyadenylated at intronic PAS) [nucleoplasm] (Danio rerio)
U2 snRNP [nucleoplasm] (Danio rerio)
puf60a [nucleoplasm] (Danio rerio)
Ub-K63-CPA:Spliceosomal A complex (pre-mRNA cleaved at intronic PAS) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (pre-mRNA cleaved at intronal PAS) [nucleoplasm] (Danio rerio)
U2 snRNP [nucleoplasm] (Danio rerio)
puf60a [nucleoplasm] (Danio rerio)
PABPN1-stimulated PAPOL synthesizes polyA tail at proximal 3'UTR PAS (Danio rerio)
Ub-K63-CPA:PABPN1:Spliceosomal A complex (pre-mRNA polyadenylated at proximal 3'UTR PAS) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (pre-mRNA polyadenylated at proximal 3'UTR PAS) [nucleoplasm] (Danio rerio)
U2 snRNP [nucleoplasm] (Danio rerio)
puf60a [nucleoplasm] (Danio rerio)
Ub-K63-CPA:Spliceosomal A complex (pre-mRNA cleaved at proximal 3'UTR PAS) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (pre-mRNA cleaved at proximal 3'UTR PAS) [nucleoplasm] (Danio rerio)
U2 snRNP [nucleoplasm] (Danio rerio)
puf60a [nucleoplasm] (Danio rerio)
PP1 dephosphorylates RNA Pol II (Danio rerio)
CPA:Spliceosomal A complex (uncleaved pre-mRNA) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (capped, methylated pre-mRNA) [nucleoplasm] (Danio rerio)
U2 snRNP [nucleoplasm] (Danio rerio)
puf60a [nucleoplasm] (Danio rerio)
CPA:Spliceosomal A complex (uncleaved pre-mRNA, RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Danio rerio)
U2 snRNP [nucleoplasm] (Danio rerio)
puf60a [nucleoplasm] (Danio rerio)
RBBP6 activates CPSF complex (Danio rerio)
CPA:Spliceosomal A complex (uncleaved pre-mRNA, RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Danio rerio)
U2 snRNP [nucleoplasm] (Danio rerio)
puf60a [nucleoplasm] (Danio rerio)
Ub-K63-CPA:Spliceosomal A complex (uncleaved pre-mRNA, RNA Pol II Ser2 dephosphorylated) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Danio rerio)
U2 snRNP [nucleoplasm] (Danio rerio)
puf60a [nucleoplasm] (Danio rerio)
mRNA Splicing (Danio rerio)
mRNA Splicing - Major Pathway (Danio rerio)
Formation of the Spliceosomal C complex containing intron lariat (Danio rerio)
Spliceosomal B* complex [nucleoplasm] (Danio rerio)
U2 12S snRNP [nucleoplasm] (Danio rerio)
puf60a [nucleoplasm] (Danio rerio)
Spliceosomal C complex [nucleoplasm] (Danio rerio)
U2 12S snRNP [nucleoplasm] (Danio rerio)
puf60a [nucleoplasm] (Danio rerio)
Formation of the Spliceosomal P complex and exon ligation (Danio rerio)
Spliceosomal C* complex [nucleoplasm] (Danio rerio)
U2 12S snRNP [nucleoplasm] (Danio rerio)
puf60a [nucleoplasm] (Danio rerio)
Spliceosomal P complex [nucleoplasm] (Danio rerio)
U2 12S snRNP [nucleoplasm] (Danio rerio)
puf60a [nucleoplasm] (Danio rerio)
External Reference Information
External Reference
UniProt:F1QZ57
Gene Names
puf60a
Reference Genes
BioGPS Gene:562370 puf60a
CTD Gene:562370 puf60a
ENSEMBL:ENSDARG00000032175
Monarch:562370 puf60a
NCBI Gene:562370 puf60a
UCSC:F1QZ57 puf60a
Reference Transcript
RefSeq:XM_005163500.5 puf60a
Other Identifiers
13089910
13278452
562370
A_15_P100567
A_15_P198881
A_15_P263746
A_15_P292321
A_15_P509662
A_15_P613682
A_15_P630981
A_15_P735266
A_15_P740941
A_15_P756911
A_15_P767916
CUST_21570_PI428451953
CUST_21571_PI428451953
CUST_21572_PI428451953
CUST_21573_PI428451953
CUST_21574_PI428451953
CUST_21575_PI428451953
CUST_21576_PI428451953
CUST_21577_PI428451953
CUST_21578_PI428451953
DRER07348
DRER22239
DRER23527
DRER30014
DRER31521
DRER32872
DRER33179
DRER33966
DRER36737
DRER37414
DRER38155
DRER43102
DRER44085
DRER44171
Dr.10578.1.A1_at
ENSDART00000043262_1
ENSDART00000043262_2
ENSDART00000056645
ENSDART00000098863
GO:0000381
GO:0003676
GO:0003723
GT_Xhyb_XM_005163500.1_214205
GT_Xhyb_XM_005163501.1_214195
GT_Xhyb_XM_005163502.1_349795
GT_Xhyb_XM_005163503.1_422775
GT_Xhyb_XM_005163504.1_349775
GT_Xhyb_XM_005163505.1_349765
GT_Xhyb_XM_005163506.1_349785
GT_Xhyb_XM_005163507.1_136546
GT_Xhyb_XM_005163508.1_136556
GT_Xhyb_XM_005163509.1_369005
GT_Xhyb_XM_005163510.1_384245
MADDr01007146
XM_683425
XM_686615
XM_704025
XM_704026
XM_704027
XM_704031
XM_704514
XM_704515
XM_704519
ZV700S00000192
Participates
as a component of
U2 snRNP [nucleoplasm] (Danio rerio)
U2 12S snRNP [nucleoplasm] (Danio rerio)
Inferred From
PUF60 [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
XP_005163557.1
ENSEMBL
ENSDARP00000056644
,
ENSDART00000056645
,
ENSDARG00000032175
ZFIN
ZDB-GENE-030131-2891
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