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cdc40 [nucleoplasm]
Stable Identifier
R-DRE-72062
Type
Protein [EntityWithAccessionedSequence]
Species
Danio rerio
Compartment
nucleoplasm
Synonyms
CDC40, Q5I0F8
Locations in the PathwayBrowser
Expand all
Metabolism of RNA (Danio rerio)
Processing of Capped Intron-Containing Pre-mRNA (Danio rerio)
Transport of Mature Transcript to Cytoplasm (Danio rerio)
Transport of Mature mRNA derived from an Intron-Containing Transcript (Danio rerio)
NXF1:NXT1 (TAP:p15) binds capped mRNA:CBC:EJC:TREX (minus DDX39B) (Danio rerio)
NXF1,2:NXT1::polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Danio rerio)
capped mRNA:CBC:EJC:TREX (minus DDX39B) [nucleoplasm] (Danio rerio)
cdc40 [nucleoplasm] (Danio rerio)
polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Danio rerio)
cdc40 [nucleoplasm] (Danio rerio)
mRNA 3'-end processing (Danio rerio)
mRNA Polyadenylation (Danio rerio)
Core CPA complex binds capped pre-mRNA (Danio rerio)
Core CPA complex:Spliceosomal A complex (uncleaved pre-mRNA) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (capped, methylated pre-mRNA) [nucleoplasm] (Danio rerio)
cdc40 [nucleoplasm] (Danio rerio)
Spliceosomal A complex (capped, methylated pre-mRNA) [nucleoplasm] (Danio rerio)
cdc40 [nucleoplasm] (Danio rerio)
PABPN1-stimulated PAPOL synthesizes polyA tail at distal 3'UTR PAS (Danio rerio)
Ub-K63-CPA:PABPN1:Spliceosomal A complex (pre-mRNA polyadenylated at distal 3'UTR PAS) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (pre-mRNA polyadenylated at distal 3'UTR PAS) [nucleoplasm] (Danio rerio)
cdc40 [nucleoplasm] (Danio rerio)
Ub-K63-CPA:Spliceosomal A complex (pre-mRNA cleaved at distal 3'UTR PAS) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (pre-mRNA cleaved at distal 3'UTR PAS) [nucleoplasm] (Danio rerio)
cdc40 [nucleoplasm] (Danio rerio)
PABPN1-stimulated PAPOL synthesizes polyA tail at intronic PAS (Danio rerio)
Ub-K63-CPA:PABPN1:Spliceosomal A complex (pre-mRNA polyadenylated at intronic PAS) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (pre-mRNA polyadenylated at intronic PAS) [nucleoplasm] (Danio rerio)
cdc40 [nucleoplasm] (Danio rerio)
Ub-K63-CPA:Spliceosomal A complex (pre-mRNA cleaved at intronic PAS) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (pre-mRNA cleaved at intronal PAS) [nucleoplasm] (Danio rerio)
cdc40 [nucleoplasm] (Danio rerio)
PABPN1-stimulated PAPOL synthesizes polyA tail at proximal 3'UTR PAS (Danio rerio)
Ub-K63-CPA:PABPN1:Spliceosomal A complex (pre-mRNA polyadenylated at proximal 3'UTR PAS) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (pre-mRNA polyadenylated at proximal 3'UTR PAS) [nucleoplasm] (Danio rerio)
cdc40 [nucleoplasm] (Danio rerio)
Ub-K63-CPA:Spliceosomal A complex (pre-mRNA cleaved at proximal 3'UTR PAS) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (pre-mRNA cleaved at proximal 3'UTR PAS) [nucleoplasm] (Danio rerio)
cdc40 [nucleoplasm] (Danio rerio)
PP1 dephosphorylates RNA Pol II (Danio rerio)
CPA:Spliceosomal A complex (uncleaved pre-mRNA) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (capped, methylated pre-mRNA) [nucleoplasm] (Danio rerio)
cdc40 [nucleoplasm] (Danio rerio)
CPA:Spliceosomal A complex (uncleaved pre-mRNA, RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Danio rerio)
cdc40 [nucleoplasm] (Danio rerio)
RBBP6 activates CPSF complex (Danio rerio)
CPA:Spliceosomal A complex (uncleaved pre-mRNA, RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Danio rerio)
cdc40 [nucleoplasm] (Danio rerio)
Ub-K63-CPA:Spliceosomal A complex (uncleaved pre-mRNA, RNA Pol II Ser2 dephosphorylated) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Danio rerio)
cdc40 [nucleoplasm] (Danio rerio)
mRNA Splicing (Danio rerio)
mRNA Splicing - Major Pathway (Danio rerio)
Formation of the Spliceosomal C complex containing intron lariat (Danio rerio)
Spliceosomal B* complex [nucleoplasm] (Danio rerio)
cdc40 [nucleoplasm] (Danio rerio)
Spliceosomal C complex [nucleoplasm] (Danio rerio)
cdc40 [nucleoplasm] (Danio rerio)
Formation of the Spliceosomal P complex and exon ligation (Danio rerio)
Spliceosomal C* complex [nucleoplasm] (Danio rerio)
cdc40 [nucleoplasm] (Danio rerio)
Spliceosomal P complex [nucleoplasm] (Danio rerio)
cdc40 [nucleoplasm] (Danio rerio)
External Reference Information
External Reference
UniProt:Q5I0F8
Gene Names
cdc40
Reference Genes
BioGPS Gene:494534 cdc40
ENSEMBL:ENSDARG00000041226
KEGG:dre:494534 cdc40
Monarch:494534 cdc40
NCBI Gene:494534 cdc40
UCSC:Q5I0F8 cdc40
Reference Transcript
RefSeq:NM_001009990.1 cdc40
Participates
as a component of
Spliceosomal A complex (pre-mRNA cleaved at intronal PAS) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (pre-mRNA polyadenylated at intronic PAS) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (pre-mRNA cleaved at proximal 3'UTR PAS) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (pre-mRNA polyadenylated at proximal 3'UTR PAS) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (pre-mRNA cleaved at distal 3'UTR PAS) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (pre-mRNA polyadenylated at distal 3'UTR PAS) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (capped, methylated pre-mRNA) [nucleoplasm] (Danio rerio)
Spliceosomal A complex (capped, methylated, polyadenylated pre-mRNA) [nucleoplasm] (Danio rerio)
Spliceosomal Pre-B complex [nucleoplasm] (Danio rerio)
Spliceosomal B complex [nucleoplasm] (Danio rerio)
Spliceosomal Bact complex [nucleoplasm] (Danio rerio)
Spliceosomal B* complex [nucleoplasm] (Danio rerio)
Spliceosomal C complex [nucleoplasm] (Danio rerio)
Spliceosomal C* complex [nucleoplasm] (Danio rerio)
Intron Lariat Spliceosome (ILS) [nucleoplasm] (Danio rerio)
Spliceosomal P complex [nucleoplasm] (Danio rerio)
Spliced mRNP [nucleoplasm] (Danio rerio)
polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Danio rerio)
capped mRNA:CBC:EJC:TREX (minus DDX39B) [nucleoplasm] (Danio rerio)
Inferred From
CDC40 [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
NP_001009990.1
ZFIN
ZDB-GENE-050116-3
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