Reactome | isy1 [nucleoplasm]

isy1 [nucleoplasm]

Stable Identifier

R-DRE-6781963

Type

Protein [EntityWithAccessionedSequence]

Species

Danio rerio

Compartment

nucleoplasm

Synonyms

ISY1, A4FUN5

Locations in the PathwayBrowser

Expand all

DNA Repair (Danio rerio)

- Nucleotide Excision Repair (Danio rerio)
  - Transcription-Coupled Nucleotide Excision Repair (TC-NER) (Danio rerio)
    - Dual incision in TC-NER (Danio rerio)
      - 3' incision by ERCC5 (XPG) in TC-NER (Danio rerio)
        
        TC-NER incision complex: 5'-incised damaged DNA:trimmed nascent mRNA:(PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Danio rerio)
        
        XAB2 complex [nucleoplasm] (Danio rerio)
        
        isy1 [nucleoplasm] (Danio rerio)
        
        TC-NER post-incision complex:incised DNA without lesion:trimmed nascent mRNA:PCNA:(PCNA:POLD,POLE),(MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Danio rerio)
        
        XAB2 complex [nucleoplasm] (Danio rerio)
        
        isy1 [nucleoplasm] (Danio rerio)
      - 5' incision of damaged DNA strand by ERCC1:ERCC4 in TC-NER (Danio rerio)
        
        TC-NER incision complex [nucleoplasm] (Danio rerio)
        
        TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Danio rerio)
        
        TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Danio rerio)
        
        XAB2 complex [nucleoplasm] (Danio rerio)
        
        isy1 [nucleoplasm] (Danio rerio)
        
        TC-NER incision complex:5'-incised damaged DNA:trimmed nascent mRNA [nucleoplasm] (Danio rerio)
        
        XAB2 complex [nucleoplasm] (Danio rerio)
        
        isy1 [nucleoplasm] (Danio rerio)
      - Binding of ERCC1:ERCC4 (ERCC1:XPF) to pre-incision complex in TC-NER (Danio rerio)
        
        TC-NER incision complex [nucleoplasm] (Danio rerio)
        
        TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Danio rerio)
        
        TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Danio rerio)
        
        XAB2 complex [nucleoplasm] (Danio rerio)
        
        isy1 [nucleoplasm] (Danio rerio)
        
        TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Danio rerio)
        
        TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Danio rerio)
        
        XAB2 complex [nucleoplasm] (Danio rerio)
        
        isy1 [nucleoplasm] (Danio rerio)
      - DNA polymerases delta, epsilon or kappa bind the TC-NER site (Danio rerio)
        
        TC-NER incision complex: 5'-incised damaged DNA:trimmed nascent mRNA:(PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Danio rerio)
        
        XAB2 complex [nucleoplasm] (Danio rerio)
        
        isy1 [nucleoplasm] (Danio rerio)
        
        TC-NER incision complex:5'-incised damaged DNA:trimmed nascent mRNA [nucleoplasm] (Danio rerio)
        
        XAB2 complex [nucleoplasm] (Danio rerio)
        
        isy1 [nucleoplasm] (Danio rerio)
      - ERCC2-facilitated RNA Pol II backtracking in TC-NER (Danio rerio)
        
        TC-NER pre-incision complex [nucleoplasm] (Danio rerio)
        
        XAB2 complex [nucleoplasm] (Danio rerio)
        
        isy1 [nucleoplasm] (Danio rerio)
        
        TC-NER pre-incision complex:Partially open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Danio rerio)
        
        XAB2 complex [nucleoplasm] (Danio rerio)
        
        isy1 [nucleoplasm] (Danio rerio)
      - ERCC3-facilitated RNA Pol II backtracking in TC-NER (Danio rerio)
        
        TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Danio rerio)
        
        XAB2 complex [nucleoplasm] (Danio rerio)
        
        isy1 [nucleoplasm] (Danio rerio)
        
        TC-NER pre-incision complex:Partially open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Danio rerio)
        
        XAB2 complex [nucleoplasm] (Danio rerio)
        
        isy1 [nucleoplasm] (Danio rerio)
      - ERCC5 and RPA bind TC-NER site (Danio rerio)
        
        TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Danio rerio)
        
        TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Danio rerio)
        
        XAB2 complex [nucleoplasm] (Danio rerio)
        
        isy1 [nucleoplasm] (Danio rerio)
        
        TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Danio rerio)
        
        XAB2 complex [nucleoplasm] (Danio rerio)
        
        isy1 [nucleoplasm] (Danio rerio)
    - Formation of TC-NER Pre-Incision Complex (Danio rerio)
      - UVSSA:USP7 deubiquitinates ERCC6 (Danio rerio)
        
        TC-NER pre-incision complex [nucleoplasm] (Danio rerio)
        
        XAB2 complex [nucleoplasm] (Danio rerio)
        
        isy1 [nucleoplasm] (Danio rerio)
        
        Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:Ub:ERCC6:ERCC8:DDB1:CUL4:RBX1:UVSSA:USP7:XAB2 complex:XPA:TCEA1:HMGN1:EP300 [nucleoplasm] (Danio rerio)
        
        XAB2 complex [nucleoplasm] (Danio rerio)
        
        isy1 [nucleoplasm] (Danio rerio)
    - Gap-filling DNA repair synthesis and ligation in TC-NER (Danio rerio)
      - Ligation of newly synthesized repair patch to incised DNA in TC-NER (Danio rerio)
        
        TC-NER post-incision complex:SSB-dsDNA:trimmed nascent mRNA: (PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Danio rerio)
        
        XAB2 complex [nucleoplasm] (Danio rerio)
        
        isy1 [nucleoplasm] (Danio rerio)
        
        TC-NER post-incision complex:dsDNA with transcription bubble [nucleoplasm] (Danio rerio)
        
        XAB2 complex [nucleoplasm] (Danio rerio)
        
        isy1 [nucleoplasm] (Danio rerio)
      - Repair DNA synthesis of ~27-30 bases long patch by POLD, POLE or POLK in TC-NER (Danio rerio)
        
        TC-NER post-incision complex:SSB-dsDNA:trimmed nascent mRNA: (PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Danio rerio)
        
        XAB2 complex [nucleoplasm] (Danio rerio)
        
        isy1 [nucleoplasm] (Danio rerio)
        
        TC-NER post-incision complex:incised DNA without lesion:trimmed nascent mRNA:PCNA:(PCNA:POLD,POLE),(MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Danio rerio)
        
        XAB2 complex [nucleoplasm] (Danio rerio)
        
        isy1 [nucleoplasm] (Danio rerio)

External Reference Information

External Reference

UniProt:A4FUN5

Gene Names

isy1

Reference Genes

BioGPS Gene:570205 isy1

ENSEMBL:ENSDARG00000063466

KEGG:dre:570205 isy1

Monarch:570205 isy1

NCBI Gene:570205 isy1

UCSC:A4FUN5 isy1

Reference Transcript

RefSeq:NM_001083563.2 isy1

Other Identifiers

12977005

570205

A_15_P160201

A_15_P571297

DRER14263

DRER54139

Dr.9018.1.A1_at

ENSDART00000093148

ENSDART00000093148_1

ENSDART00000093148_2

GO:0000350

LOLS08330

XM_693654

ZV700S00006511

Participates

as a component of

Inferred From

ISY1 [nucleoplasm] (Homo sapiens)

Cross References

RefSeq

NP_001077032.1

ENSEMBL

ENSDARP00000087580, ENSDART00000093148, ENSDARG00000063466

ZFIN

ZDB-GENE-030131-5864

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