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lig1 [nucleoplasm]
Stable Identifier
R-DRE-53787
Type
Protein [EntityWithAccessionedSequence]
Species
Danio rerio
Compartment
nucleoplasm
Synonyms
LIG1, B0S533
Locations in the PathwayBrowser
Expand all
Cell Cycle (Danio rerio)
Cell Cycle, Mitotic (Danio rerio)
S Phase (Danio rerio)
Synthesis of DNA (Danio rerio)
DNA strand elongation (Danio rerio)
Lagging Strand Synthesis (Danio rerio)
Processive synthesis on the lagging strand (Danio rerio)
Joining of adjacent Okazaki fragments (Danio rerio)
lig1 [nucleoplasm] (Danio rerio)
DNA Repair (Danio rerio)
Base Excision Repair (Danio rerio)
Resolution of Abasic Sites (AP sites) (Danio rerio)
Resolution of AP sites via the multiple-nucleotide patch replacement pathway (Danio rerio)
PCNA-Dependent Long Patch Base Excision Repair (Danio rerio)
LIG1 binds APEX1 and PCNA at SSB (Danio rerio)
LIG1:APEX1:PCNA:POLD,POLE:RPA:RFC:SSB:(3'poly-dNMP)-dsDNA [nucleoplasm] (Danio rerio)
lig1 [nucleoplasm] (Danio rerio)
lig1 [nucleoplasm] (Danio rerio)
LIG1 bound to APEX1 and PCNA ligates SSB (Danio rerio)
LIG1:APEX1:PCNA:POLD,POLE:RPA:RFC:SSB:(3'poly-dNMP)-dsDNA [nucleoplasm] (Danio rerio)
lig1 [nucleoplasm] (Danio rerio)
LIG1:APEX1:PCNA:POLD,POLE:RPA:RFC:dsDNA [nucleoplasm] (Danio rerio)
lig1 [nucleoplasm] (Danio rerio)
lig1 [nucleoplasm] (Danio rerio)
POLB-Dependent Long Patch Base Excision Repair (Danio rerio)
LIG1 binds POLB at long-patch BER site (Danio rerio)
LIG1:POLB:SSB(3'poly-dNMP)-dsDNA [nucleoplasm] (Danio rerio)
lig1 [nucleoplasm] (Danio rerio)
lig1 [nucleoplasm] (Danio rerio)
LIG1 bound to POLB ligates SSB (Danio rerio)
LIG1:POLB:SSB(3'poly-dNMP)-dsDNA [nucleoplasm] (Danio rerio)
lig1 [nucleoplasm] (Danio rerio)
LIG1:POLB:dsDNA [nucleoplasm] (Danio rerio)
lig1 [nucleoplasm] (Danio rerio)
lig1 [nucleoplasm] (Danio rerio)
DNA Double-Strand Break Repair (Danio rerio)
Homology Directed Repair (Danio rerio)
HDR through Homologous Recombination (HRR) or Single Strand Annealing (SSA) (Danio rerio)
HDR through Single Strand Annealing (SSA) (Danio rerio)
LIG1 binds SSA sites (Danio rerio)
LIG1:ERCC1:ERCC4:RAD51:p-Y104-RAD52:p-RPA:ATR:ATRIP:SSB-dsDNA with inter-SSA deletion:Flaps:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:BRCA1-C complex:EXO1,DNA2:BLM,WRN:p-S990,Ac-K1249-BRIP1:RAD17:RFC:RAD9:HUS1:RAD1:RHNO1:TOPBP1 [nucleoplasm] (Danio rerio)
lig1 [nucleoplasm] (Danio rerio)
lig1 [nucleoplasm] (Danio rerio)
Mismatch Repair (Danio rerio)
Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta) (Danio rerio)
DNA ligase I ligates single stranded nick in double stranded DNA (Danio rerio)
lig1 [nucleoplasm] (Danio rerio)
Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha) (Danio rerio)
DNA ligase I ligates single stranded nick in double stranded DNA (Danio rerio)
lig1 [nucleoplasm] (Danio rerio)
Nucleotide Excision Repair (Danio rerio)
Transcription-Coupled Nucleotide Excision Repair (TC-NER) (Danio rerio)
Gap-filling DNA repair synthesis and ligation in TC-NER (Danio rerio)
Ligation of newly synthesized repair patch to incised DNA in TC-NER (Danio rerio)
LIG1,LIG3:XRCC1 [nucleoplasm] (Danio rerio)
lig1 [nucleoplasm] (Danio rerio)
DNA Replication (Danio rerio)
Synthesis of DNA (Danio rerio)
DNA strand elongation (Danio rerio)
Lagging Strand Synthesis (Danio rerio)
Processive synthesis on the lagging strand (Danio rerio)
Joining of adjacent Okazaki fragments (Danio rerio)
lig1 [nucleoplasm] (Danio rerio)
External Reference Information
External Reference
UniProt:B0S533
Gene Names
lig1
Reference Genes
BioGPS Gene:556995 lig1
ENSEMBL:ENSDARG00000060041
KEGG:dre:556995 lig1
Monarch:556995 lig1
NCBI Gene:556995 lig1
UCSC:B0S533 lig1
Reference Transcript
RefSeq:NM_001126388.1 lig1
Other Identifiers
13091944
13278440
556995
A_15_P109372
A_15_P199281
A_15_P540607
CUST_26080_PI428451953
CUST_8090_PI428451958
DRER12653
Dr.6786.1.A1_at
ENSDART00000084166
ENSDART00000084166_1
ENSDART00000084166_2
GO:0003677
GO:0003824
GO:0003909
GO:0003910
GO:0005524
GO:0006281
GO:0006310
GO:0016874
GO:0071897
GO:0140097
GT_Spec_NM_001126388.1_106872
LOLS14352
MADDr01013983
XM_679949
ZV700S00005950
Participates
as a component of
LIG1:APEX1:PCNA:POLD,POLE:RPA:RFC:dsDNA [nucleoplasm] (Danio rerio)
LIG1:APEX1:PCNA:POLD,POLE:RPA:RFC:SSB:(3'poly-dNMP)-dsDNA [nucleoplasm] (Danio rerio)
LIG1:POLB:SSB(3'poly-dNMP)-dsDNA [nucleoplasm] (Danio rerio)
LIG1:POLB:dsDNA [nucleoplasm] (Danio rerio)
LIG1:ERCC1:ERCC4:RAD51:p-Y104-RAD52:p-RPA:ATR:ATRIP:SSB-dsDNA with inter-SSA deletion:Flaps:p-MRN:p-S1981,Ac-K3016-ATM:KAT5:BRCA1-C complex:EXO1,DNA2:BLM,WRN:p-S990,Ac-K1249-BRIP1:RAD17:RFC:RAD9:HUS1:RAD1:RHNO1:TOPBP1 [nucleoplasm] (Danio rerio)
as an input of
LIG1 binds APEX1 and PCNA at SSB (Danio rerio)
LIG1 binds POLB at long-patch BER site (Danio rerio)
LIG1 binds SSA sites (Danio rerio)
as a member of
LIG1,LIG3:XRCC1 [nucleoplasm] (Danio rerio)
Inferred From
LIG1 [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
NP_001119860.1
ENSEMBL
ENSDARG00000060041
,
ENSDART00000084174
,
ENSDARP00000078609
ZFIN
ZDB-GENE-110404-2
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