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upf3b [nucleoplasm]
Stable Identifier
R-DRE-156776
Type
Protein [EntityWithAccessionedSequence]
Species
Danio rerio
Compartment
nucleoplasm
Synonyms
UPF3B, F1QNX7
Locations in the PathwayBrowser
Expand all
Metabolism of RNA (Danio rerio)
Processing of Capped Intron-Containing Pre-mRNA (Danio rerio)
Transport of Mature Transcript to Cytoplasm (Danio rerio)
Transport of Mature mRNA derived from an Intron-Containing Transcript (Danio rerio)
NXF1:NXT1 (TAP:p15) binds capped mRNA:CBC:EJC:TREX (minus DDX39B) (Danio rerio)
NXF1,2:NXT1::polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Danio rerio)
capped mRNA:CBC:EJC:TREX (minus DDX39B) [nucleoplasm] (Danio rerio)
EJC [nucleoplasm] (Danio rerio)
upf3b [nucleoplasm] (Danio rerio)
polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Danio rerio)
EJC [nucleoplasm] (Danio rerio)
upf3b [nucleoplasm] (Danio rerio)
Transport of the export-competent mRNP complex through the NPC (Danio rerio)
NPC:NXF1,2:NXT1:EJC:CBC:mRNA [nucleoplasm] (Danio rerio)
EJC [nucleoplasm] (Danio rerio)
upf3b [nucleoplasm] (Danio rerio)
mRNA Splicing (Danio rerio)
mRNA Splicing - Major Pathway (Danio rerio)
Formation of the Spliceosomal C complex containing intron lariat (Danio rerio)
Spliceosomal B* complex [nucleoplasm] (Danio rerio)
upf3b [nucleoplasm] (Danio rerio)
Spliceosomal C complex [nucleoplasm] (Danio rerio)
upf3b [nucleoplasm] (Danio rerio)
Formation of the Spliceosomal P complex and exon ligation (Danio rerio)
Spliceosomal C* complex [nucleoplasm] (Danio rerio)
upf3b [nucleoplasm] (Danio rerio)
Spliceosomal P complex [nucleoplasm] (Danio rerio)
spliced mRNA:EJC:CBC complex:Alternative splicing factor [nucleoplasm] (Danio rerio)
EJC [nucleoplasm] (Danio rerio)
upf3b [nucleoplasm] (Danio rerio)
External Reference Information
External Reference
UniProt:F1QNX7
Gene Names
upf3b
Reference Genes
BioGPS Gene:393929 upf3b
ENSEMBL:ENSDARG00000000489
KEGG:dre:393929 upf3b
Monarch:393929 upf3b
NCBI Gene:393929 upf3b
UCSC:F1QNX7 upf3b
Reference Transcript
RefSeq:NM_200954.1 upf3b
Other Identifiers
13015933
13283552
393929
A_15_P119602
A_15_P120021
BC055632.1
CUST_10763_PI428451953
DRER01144
DRER32814
Dr.13796.1.S1_at
Dr.13796.2.S1_at
Dr.13796.2.S1_x_at
Dr.26498.1.A1_at
ENSDART00000010019
ENSDART00000010019_1
ENSDART00000010019_2
ENSDART00000113125
GO:0000184
GO:0003676
MADDr01008609
NM_200954
OTTDART00000026836
Participates
as a component of
Spliceosomal B* complex [nucleoplasm] (Danio rerio)
Spliceosomal C complex [nucleoplasm] (Danio rerio)
Spliceosomal C* complex [nucleoplasm] (Danio rerio)
EJC [nucleoplasm] (Danio rerio)
EJC [nucleoplasm] (Danio rerio)
Other forms of this molecule
upf3b [cytosol]
Inferred From
UPF3B [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
NP_957248.1
ENSEMBL
ENSDARP00000011948
,
ENSDART00000010019
,
ENSDARG00000000489
ZFIN
ZDB-GENE-040426-1630
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