Reactome | RPL39 [cytosol]

RPL39 [cytosol]

Stable Identifier

R-BTA-72472

Type

Protein [EntityWithAccessionedSequence]

Species

Bos taurus

Compartment

cytosol

Synonyms

RPL39, Q3T051

Locations in the PathwayBrowser

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Metabolism of RNA (Bos taurus)

- Nonsense-Mediated Decay (NMD) (Bos taurus)
  - Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) (Bos taurus)
    - SMG1 phosphorylates UPF1 (enhanced by Exon Junction Complex) (Bos taurus)
      - SMG1:Phosphorylated UPF1:EJC:Translated mRNP [cytosol] (Bos taurus)
        
        Translated mRNA Complex with Premature Termination Codon Preceding Exon Junction [cytosol] (Bos taurus)
        
        80S ribosome [cytosol] (Bos taurus)
        
        60S ribosomal complex [cytosol] (Bos taurus)
        
        RPL39 [cytosol] (Bos taurus)
      - SMG1:UPF1:EJC:Translated mRNP [cytosol] (Bos taurus)
        
        Translated mRNA Complex with Premature Termination Codon Preceding Exon Junction [cytosol] (Bos taurus)
        
        80S ribosome [cytosol] (Bos taurus)
        
        60S ribosomal complex [cytosol] (Bos taurus)
        
        RPL39 [cytosol] (Bos taurus)
    - SMG6 hydrolyzes mRNA with premature termination codon (Bos taurus)
      - Phosphorylated UPF1:SMG5:SMG7:SMG6:PP2A:Translated mRNP [cytosol] (Bos taurus)
        
        Translated mRNA Complex with Premature Termination Codon Preceding Exon Junction [cytosol] (Bos taurus)
        
        80S ribosome [cytosol] (Bos taurus)
        
        60S ribosomal complex [cytosol] (Bos taurus)
        
        RPL39 [cytosol] (Bos taurus)
    - UPF1 binds an mRNP with a termination codon preceding an Exon Junction Complex (Bos taurus)
      - SMG1:UPF1:EJC:Translated mRNP [cytosol] (Bos taurus)
        
        Translated mRNA Complex with Premature Termination Codon Preceding Exon Junction [cytosol] (Bos taurus)
        
        80S ribosome [cytosol] (Bos taurus)
        
        60S ribosomal complex [cytosol] (Bos taurus)
        
        RPL39 [cytosol] (Bos taurus)
      - Translated mRNA Complex with Premature Termination Codon Preceding Exon Junction [cytosol] (Bos taurus)
        
        80S ribosome [cytosol] (Bos taurus)
        
        60S ribosomal complex [cytosol] (Bos taurus)
        
        RPL39 [cytosol] (Bos taurus)
    - p-4S-UPF1 recruits SMG5, SMG7, SMG6, PNRC2, DCP1A, and PP2A (Bos taurus)
      - Phosphorylated UPF1:SMG5:SMG7:SMG6:PP2A:Translated mRNP [cytosol] (Bos taurus)
        
        Translated mRNA Complex with Premature Termination Codon Preceding Exon Junction [cytosol] (Bos taurus)
        
        80S ribosome [cytosol] (Bos taurus)
        
        60S ribosomal complex [cytosol] (Bos taurus)
        
        RPL39 [cytosol] (Bos taurus)
      - SMG1:Phosphorylated UPF1:EJC:Translated mRNP [cytosol] (Bos taurus)
        
        Translated mRNA Complex with Premature Termination Codon Preceding Exon Junction [cytosol] (Bos taurus)
        
        80S ribosome [cytosol] (Bos taurus)
        
        60S ribosomal complex [cytosol] (Bos taurus)
        
        RPL39 [cytosol] (Bos taurus)
  - Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) (Bos taurus)
    - Formation of UPF1:eRF3 complex on mRNA with a premature termination codon and no Exon Junction Complex (Bos taurus)
      - Translated mRNA Complex with Premature Termination Codon Not Preceding Exon Junction [cytosol] (Bos taurus)
        
        80S ribosome [cytosol] (Bos taurus)
        
        60S ribosomal complex [cytosol] (Bos taurus)
        
        RPL39 [cytosol] (Bos taurus)
      - UPF1:eRF3 Complex on Translated mRNA [cytosol] (Bos taurus)
        
        Translated mRNA Complex with Premature Termination Codon Not Preceding Exon Junction [cytosol] (Bos taurus)
        
        80S ribosome [cytosol] (Bos taurus)
        
        60S ribosomal complex [cytosol] (Bos taurus)
        
        RPL39 [cytosol] (Bos taurus)
- rRNA processing (Bos taurus)
  - rRNA processing in the nucleus and cytosol (Bos taurus)
    - Major pathway of rRNA processing in the nucleolus and cytosol (Bos taurus)
      - 12S pre-rRNA is nucleolytically processed to yield 5.8S rRNA (Bos taurus)
        
        60S ribosomal complex [cytosol] (Bos taurus)
        
        RPL39 [cytosol] (Bos taurus)

External Reference Information

External Reference

UniProt:Q3T051

Gene Names

RPL39

Reference Genes

BioGPS Gene:767908 RPL39

ENSEMBL:ENSBTAG00000034844

KEGG:bta:101902490 RPL39

KEGG:bta:101907518 RPL39

KEGG:bta:767908 RPL39

Monarch:767908 RPL39

NCBI Gene:767908 RPL39

UCSC:Q3T051 RPL39

Reference Transcript

RefSeq:NM_001105455.1 RPL39

Other Identifiers

101902490

101907518

Bt.9548.1.S1_at

GO:0003735

GO:0005198

GO:0005840

GO:0006412

Participates

as a component of

Inferred From

RPL39,RPL39L [cytosol] (Homo sapiens)

RPL39 [cytosol] (Homo sapiens)

Cross References

RefSeq

NP_001098925.1

ENSEMBL

ENSBTAG00000034844, ENSBTAT00000049315, ENSBTAT00000083996, ENSBTAP00000054413, ENSBTAP00000046223, ENSBTAP00000070654, ENSBTAG00000047136, ENSBTAT00000064702, ENSBTAG00000049441

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