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DNA containing 5-mC [nucleoplasm]
Stable Identifier
R-ALL-212172
Type
OtherEntity
Compartment
nucleoplasm
Synonyms
methylated DNA, Double-Stranded DNA containing 5-methylcytosine
Locations in the PathwayBrowser
for Species:
Homo sapiens
Bos taurus
Canis familiaris
Danio rerio
Drosophila melanogaster
Gallus gallus
Rattus norvegicus
Sus scrofa
Xenopus tropicalis
Expand all
Gene expression (Transcription) (Bos taurus)
Epigenetic regulation of gene expression (Bos taurus)
Negative epigenetic regulation of rRNA expression (Bos taurus)
NoRC negatively regulates rRNA expression (Bos taurus)
MBD2 binds methylcytosine in chromatin (Bos taurus)
Chromatin (H3K9me2, 5mC):MBD2 [nucleoplasm] (Bos taurus)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Bos taurus)
DNA containing 5-mC [nucleoplasm]
Chromatin with H3K9me2, 5mC [nucleoplasm] (Bos taurus)
DNA containing 5-mC [nucleoplasm]
RNA Polymerase I Transcription (Bos taurus)
RNA Polymerase I Promoter Clearance (Bos taurus)
RNA Polymerase I Promoter Opening (Bos taurus)
UBF-1 Binds rDNA Promoter (Bos taurus)
Chromatin (H3K9me2, 5mC):MBD2 [nucleoplasm] (Bos taurus)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Bos taurus)
DNA containing 5-mC [nucleoplasm]
Gene expression (Transcription) (Canis familiaris)
Epigenetic regulation of gene expression (Canis familiaris)
Negative epigenetic regulation of rRNA expression (Canis familiaris)
NoRC negatively regulates rRNA expression (Canis familiaris)
MBD2 binds methylcytosine in chromatin (Canis familiaris)
Chromatin (H3K9me2, 5mC):MBD2 [nucleoplasm] (Canis familiaris)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Canis familiaris)
DNA containing 5-mC [nucleoplasm]
Chromatin with H3K9me2, 5mC [nucleoplasm] (Canis familiaris)
DNA containing 5-mC [nucleoplasm]
RNA Polymerase I Transcription (Canis familiaris)
RNA Polymerase I Promoter Clearance (Canis familiaris)
RNA Polymerase I Promoter Opening (Canis familiaris)
UBF-1 Binds rDNA Promoter (Canis familiaris)
Chromatin (H3K9me2, 5mC):MBD2 [nucleoplasm] (Canis familiaris)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Canis familiaris)
DNA containing 5-mC [nucleoplasm]
Gene expression (Transcription) (Danio rerio)
Epigenetic regulation of gene expression (Danio rerio)
Negative epigenetic regulation of rRNA expression (Danio rerio)
NoRC negatively regulates rRNA expression (Danio rerio)
MBD2 binds methylcytosine in chromatin (Danio rerio)
Chromatin (H3K9me2, 5mC):MBD2 [nucleoplasm] (Danio rerio)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Danio rerio)
DNA containing 5-mC [nucleoplasm]
Chromatin with H3K9me2, 5mC [nucleoplasm] (Danio rerio)
DNA containing 5-mC [nucleoplasm]
RNA Polymerase I Transcription (Danio rerio)
RNA Polymerase I Promoter Clearance (Danio rerio)
RNA Polymerase I Promoter Opening (Danio rerio)
UBF-1 Binds rDNA Promoter (Danio rerio)
Chromatin (H3K9me2, 5mC):MBD2 [nucleoplasm] (Danio rerio)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Danio rerio)
DNA containing 5-mC [nucleoplasm]
Gene expression (Transcription) (Drosophila melanogaster)
Epigenetic regulation of gene expression (Drosophila melanogaster)
Negative epigenetic regulation of rRNA expression (Drosophila melanogaster)
NoRC negatively regulates rRNA expression (Drosophila melanogaster)
MBD2 binds methylcytosine in chromatin (Drosophila melanogaster)
Chromatin (H3K9me2, 5mC):MBD2 [nucleoplasm] (Drosophila melanogaster)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Drosophila melanogaster)
DNA containing 5-mC [nucleoplasm]
Chromatin with H3K9me2, 5mC [nucleoplasm] (Drosophila melanogaster)
DNA containing 5-mC [nucleoplasm]
Gene expression (Transcription) (Gallus gallus)
RNA Polymerase I Transcription (Gallus gallus)
RNA Polymerase I Promoter Clearance (Gallus gallus)
RNA Polymerase I Promoter Opening (Gallus gallus)
UBF-1 Binds rDNA Promoter (Gallus gallus)
Chromatin (H3K9me2, 5mC):MBD2 [nucleoplasm] (Gallus gallus)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Gallus gallus)
DNA containing 5-mC [nucleoplasm]
Developmental Biology (Homo sapiens)
Maternal to zygotic transition (MZT) (Homo sapiens)
Chromatin modifications during the maternal to zygotic transition (MZT) (Homo sapiens)
AICDA deaminates cytidine in chromatin containing histone H3.3 and 5-methylcytidine (Homo sapiens)
Chromatin with H3.3, H2AX, and 5mC [nucleoplasm] (Homo sapiens)
DNA containing 5-mC [nucleoplasm]
DPPA3 binds histone H3K9me2 in chromatin (Homo sapiens)
Chromatin with DPPA3:H3K9me2 and 5mC [nucleoplasm] (Homo sapiens)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Homo sapiens)
DNA containing 5-mC [nucleoplasm]
Chromatin with H3K9me2, 5mC [nucleoplasm] (Homo sapiens)
DNA containing 5-mC [nucleoplasm]
METTL23 and STGP4 (GSE) bind H3.3 dimethylarginine-17 (H3K17me2a) (Homo sapiens)
Chromatin with H3.3 dimethylarginine-17, H2AX, and 5mC [nucleoplasm] (Homo sapiens)
DNA containing 5-mC [nucleoplasm]
STGP4:METTL23:Chromatin with H3.3 dimethylarginine-17, H2A.x, and 5-mC [nucleoplasm] (Homo sapiens)
Chromatin with H3.3 dimethylarginine-17, H2AX, and 5mC [nucleoplasm] (Homo sapiens)
DNA containing 5-mC [nucleoplasm]
TET3 binds chromatin with H3K17me2a and 5-mC:METTL23:STGP4 (Homo sapiens)
STGP4:METTL23:Chromatin with H3.3 dimethylarginine-17, H2A.x, and 5-mC [nucleoplasm] (Homo sapiens)
Chromatin with H3.3 dimethylarginine-17, H2AX, and 5mC [nucleoplasm] (Homo sapiens)
DNA containing 5-mC [nucleoplasm]
TET3:STGP4:METTL23:Chromatin with H3.3 dimethylarginine-17, H2A.x, and 5-mC [nucleoplasm] (Homo sapiens)
Chromatin with H3.3 dimethylarginine-17, H2AX, and 5mC [nucleoplasm] (Homo sapiens)
DNA containing 5-mC [nucleoplasm]
TET3 oxidizes 5-methylcytosine to 5-hydroxymethylcytosine in chromatin containing histone H3.3 (Homo sapiens)
TET3:STGP4:METTL23:Chromatin with H3.3 dimethylarginine-17, H2A.x, and 5-mC [nucleoplasm] (Homo sapiens)
Chromatin with H3.3 dimethylarginine-17, H2AX, and 5mC [nucleoplasm] (Homo sapiens)
DNA containing 5-mC [nucleoplasm]
Gene expression (Transcription) (Homo sapiens)
Epigenetic regulation of gene expression (Homo sapiens)
DNA methylation (Homo sapiens)
DNMT3A:DNMT3L methylates cytosine in DNA (Homo sapiens)
DNMT3A:DNMT3L:Chromatin with 5mC [nucleoplasm] (Homo sapiens)
Chromatin with 5mC [nucleoplasm] (Homo sapiens)
DNA containing 5-mC [nucleoplasm]
DNMT3B:DNMT3L methylates cytosine in DNA (Homo sapiens)
DNMT3B:DNMT3L:Chromatin with 5mC [nucleoplasm] (Homo sapiens)
Chromatin with 5mC [nucleoplasm] (Homo sapiens)
DNA containing 5-mC [nucleoplasm]
Negative epigenetic regulation of rRNA expression (Homo sapiens)
NoRC negatively regulates rRNA expression (Homo sapiens)
MBD2 binds methylcytosine in chromatin (Homo sapiens)
Chromatin (H3K9me2, 5mC):MBD2 [nucleoplasm] (Homo sapiens)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Homo sapiens)
DNA containing 5-mC [nucleoplasm]
Chromatin with H3K9me2, 5mC [nucleoplasm] (Homo sapiens)
DNA containing 5-mC [nucleoplasm]
NoRC:HDAC:DNMT methylates cytosine of the rRNA genes (Homo sapiens)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Homo sapiens)
DNA containing 5-mC [nucleoplasm]
Regulation of endogenous retroelements (Homo sapiens)
Regulation of endogenous retroelements by Piwi-interacting RNAs (piRNAs) (Homo sapiens)
DNMT3A:DNMT3L in nascent RNA transcript:MeR-PIWIL4:2'-O-methyl-piRNA:SPOCD1:DNMT3A:DNMT3L methylates cytosine in DNA (Homo sapiens)
Chromatin with 5mC [nucleoplasm] (Homo sapiens)
DNA containing 5-mC [nucleoplasm]
TET1,2,3 and TDG demethylate DNA (Homo sapiens)
TET1,2,3 oxidizes 5-methylcytosine to 5-hydroxymethylcytosine (Homo sapiens)
DNA containing 5-mC [nucleoplasm]
RNA Polymerase I Transcription (Homo sapiens)
RNA Polymerase I Promoter Clearance (Homo sapiens)
RNA Polymerase I Promoter Opening (Homo sapiens)
UBF-1 Binds rDNA Promoter (Homo sapiens)
Chromatin (H3K9me2, 5mC):MBD2 [nucleoplasm] (Homo sapiens)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Homo sapiens)
DNA containing 5-mC [nucleoplasm]
Gene expression (Transcription) (Rattus norvegicus)
Epigenetic regulation of gene expression (Rattus norvegicus)
Negative epigenetic regulation of rRNA expression (Rattus norvegicus)
NoRC negatively regulates rRNA expression (Rattus norvegicus)
MBD2 binds methylcytosine in chromatin (Rattus norvegicus)
Chromatin (H3K9me2, 5mC):MBD2 [nucleoplasm] (Rattus norvegicus)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Rattus norvegicus)
DNA containing 5-mC [nucleoplasm]
Chromatin with H3K9me2, 5mC [nucleoplasm] (Rattus norvegicus)
DNA containing 5-mC [nucleoplasm]
RNA Polymerase I Transcription (Rattus norvegicus)
RNA Polymerase I Promoter Clearance (Rattus norvegicus)
RNA Polymerase I Promoter Opening (Rattus norvegicus)
UBF-1 Binds rDNA Promoter (Rattus norvegicus)
Chromatin (H3K9me2, 5mC):MBD2 [nucleoplasm] (Rattus norvegicus)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Rattus norvegicus)
DNA containing 5-mC [nucleoplasm]
Gene expression (Transcription) (Sus scrofa)
Epigenetic regulation of gene expression (Sus scrofa)
Negative epigenetic regulation of rRNA expression (Sus scrofa)
NoRC negatively regulates rRNA expression (Sus scrofa)
MBD2 binds methylcytosine in chromatin (Sus scrofa)
Chromatin (H3K9me2, 5mC):MBD2 [nucleoplasm] (Sus scrofa)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Sus scrofa)
DNA containing 5-mC [nucleoplasm]
Chromatin with H3K9me2, 5mC [nucleoplasm] (Sus scrofa)
DNA containing 5-mC [nucleoplasm]
RNA Polymerase I Transcription (Sus scrofa)
RNA Polymerase I Promoter Clearance (Sus scrofa)
RNA Polymerase I Promoter Opening (Sus scrofa)
UBF-1 Binds rDNA Promoter (Sus scrofa)
Chromatin (H3K9me2, 5mC):MBD2 [nucleoplasm] (Sus scrofa)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Sus scrofa)
DNA containing 5-mC [nucleoplasm]
Gene expression (Transcription) (Xenopus tropicalis)
Epigenetic regulation of gene expression (Xenopus tropicalis)
Negative epigenetic regulation of rRNA expression (Xenopus tropicalis)
NoRC negatively regulates rRNA expression (Xenopus tropicalis)
MBD2 binds methylcytosine in chromatin (Xenopus tropicalis)
Chromatin (H3K9me2, 5mC):MBD2 [nucleoplasm] (Xenopus tropicalis)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Xenopus tropicalis)
DNA containing 5-mC [nucleoplasm]
Chromatin with H3K9me2, 5mC [nucleoplasm] (Xenopus tropicalis)
DNA containing 5-mC [nucleoplasm]
RNA Polymerase I Transcription (Xenopus tropicalis)
RNA Polymerase I Promoter Clearance (Xenopus tropicalis)
RNA Polymerase I Promoter Opening (Xenopus tropicalis)
UBF-1 Binds rDNA Promoter (Xenopus tropicalis)
Chromatin (H3K9me2, 5mC):MBD2 [nucleoplasm] (Xenopus tropicalis)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Xenopus tropicalis)
DNA containing 5-mC [nucleoplasm]
Participates
as an output of
NoRC:intergenic spacer:Hdac:Dnmt complex methylates cytosine in the rRNA genes (Mus musculus)
as an input of
Tet1,2,3 oxidizes 5-methylcytosine to 5-hydroxymethylcytosine (Mus musculus)
TET1,2,3 oxidizes 5-methylcytosine to 5-hydroxymethylcytosine (Homo sapiens)
as a component of
Chromatin with 5mC [nucleoplasm] (Mus musculus)
Chromatin with 5mC [nucleoplasm] (Homo sapiens)
Chromatin with H3.3, H2Ax, and 5mC [nucleoplasm] (Mus musculus)
Chromatin with H3.3, H2AX, and 5mC [nucleoplasm] (Homo sapiens)
Chromatin with H3K9me2 and 5mC [nucleoplasm] (Mus musculus)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Xenopus tropicalis)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Canis familiaris)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Drosophila melanogaster)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Gallus gallus)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Rattus norvegicus)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Sus scrofa)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Bos taurus)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Danio rerio)
Chromatin with H3K9me2, 5mC [nucleoplasm] (Homo sapiens)
Chromatin with H3.3 dimethylarginine-17 and 5mC [nucleoplasm] (Mus musculus)
Chromatin with H3.3 dimethylarginine-17, H2AX, and 5mC [nucleoplasm] (Homo sapiens)
Cross References
ChEBI
27551
,
4705
COMPOUND
C02967
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