{
  "dbId" : 353377,
  "stId" : "R-GGA-353377",
  "speciesName" : "Gallus gallus",
  "nodes" : [ {
    "dbId" : 217091,
    "stId" : "R-GGA-217091",
    "displayName" : "RAD9A [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 20 ],
    "identifier" : "Q76F79",
    "standardIdentifier" : "uniprot:Q76F79",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "rad9" ],
    "parents" : [ 265854, 217205 ],
    "children" : [ ]
  }, {
    "dbId" : 353285,
    "stId" : "R-GGA-353285",
    "displayName" : "MAD2L2 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 111 ],
    "identifier" : "Q4KWZ6",
    "standardIdentifier" : "uniprot:Q4KWZ6",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "MAD2L2", "REV7" ],
    "parents" : [ 353521 ],
    "children" : [ ]
  }, {
    "dbId" : 353284,
    "stId" : "R-GGA-353284",
    "displayName" : "XP-C-RAD23B heterodimer [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 146 ],
    "parents" : [ 353421 ],
    "children" : [ 353459, 353347 ]
  }, {
    "dbId" : 217090,
    "stId" : "R-GGA-217090",
    "displayName" : "RAD18 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 106 ],
    "identifier" : "Q5ZIP0",
    "standardIdentifier" : "uniprot:Q5ZIP0",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "RCJMB04_24j13" ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 353281,
    "stId" : "R-GGA-353281",
    "displayName" : "NEIL2 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 96 ],
    "identifier" : "ENSGALP00000026842",
    "standardIdentifier" : "ensembl:ENSGALP00000026842",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 353522 ],
    "children" : [ ]
  }, {
    "dbId" : 6793570,
    "stId" : "R-GGA-6793570",
    "displayName" : "CpG(T:G)-dsDNA [nucleoplasm]",
    "schemaClass" : "GenomeEncodedEntity",
    "speciesId" : 49591,
    "parents" : [ 353305 ],
    "children" : [ ]
  }, {
    "dbId" : 113671,
    "stId" : "R-ALL-113671",
    "displayName" : "2OG [nucleoplasm]",
    "schemaClass" : "SimpleEntity",
    "speciesId" : 0,
    "diagramIds" : [ 119 ],
    "identifier" : "16810",
    "standardIdentifier" : "chebi:16810",
    "referenceType" : "ReferenceMolecule",
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 217092,
    "stId" : "R-GGA-217092",
    "displayName" : "MRE11A [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 76 ],
    "identifier" : "Q9IAM7",
    "standardIdentifier" : "uniprot:Q9IAM7",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "MRE11" ],
    "parents" : [ 351422 ],
    "children" : [ ]
  }, {
    "dbId" : 353282,
    "stId" : "R-GGA-353282",
    "displayName" : "G/T specific TDG glycosylase:thymine complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 91 ],
    "parents" : [ ],
    "children" : [ 6791067, 353405 ]
  }, {
    "dbId" : 110345,
    "stId" : "R-ALL-110345",
    "displayName" : "Pol Delta synthesized oligonucleotide [nucleoplasm]",
    "schemaClass" : "OtherEntity",
    "speciesId" : 0,
    "parents" : [ 418652 ],
    "children" : [ ]
  }, {
    "dbId" : 113675,
    "stId" : "R-ALL-113675",
    "displayName" : "Alkylated DNA with 1-methyladenine [nucleoplasm]",
    "schemaClass" : "OtherEntity",
    "speciesId" : 0,
    "diagramIds" : [ 122 ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 113677,
    "stId" : "R-ALL-113677",
    "displayName" : "Repaired DNA after oxidative dealkylation [nucleoplasm]",
    "schemaClass" : "OtherEntity",
    "speciesId" : 0,
    "diagramIds" : [ 128 ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 113679,
    "stId" : "R-ALL-113679",
    "displayName" : "Alkylated DNA with 3-methylcytosine [nucleoplasm]",
    "schemaClass" : "OtherEntity",
    "speciesId" : 0,
    "diagramIds" : [ 129 ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 113681,
    "stId" : "R-ALL-113681",
    "displayName" : "CH3CHO [nucleoplasm]",
    "schemaClass" : "SimpleEntity",
    "speciesId" : 0,
    "diagramIds" : [ 132 ],
    "identifier" : "15343",
    "standardIdentifier" : "chebi:15343",
    "referenceType" : "ReferenceMolecule",
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 113680,
    "stId" : "R-ALL-113680",
    "displayName" : "Alkylated DNA with 1-ethyladenine [nucleoplasm]",
    "schemaClass" : "OtherEntity",
    "speciesId" : 0,
    "diagramIds" : [ 123 ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 113685,
    "stId" : "R-ALL-113685",
    "displayName" : "O2 [nucleoplasm]",
    "schemaClass" : "SimpleEntity",
    "speciesId" : 0,
    "diagramIds" : [ 120 ],
    "identifier" : "15379",
    "standardIdentifier" : "chebi:15379",
    "referenceType" : "ReferenceMolecule",
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 353297,
    "stId" : "R-GGA-353297",
    "displayName" : "Pol zeta-damaged DNA complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 107 ],
    "parents" : [ ],
    "children" : [ 353521, 109939 ]
  }, {
    "dbId" : 217108,
    "stId" : "R-GGA-217108",
    "displayName" : "ATRIP-ATR complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 19 ],
    "parents" : [ 265945 ],
    "children" : [ 217006, 217047 ]
  }, {
    "dbId" : 353305,
    "stId" : "R-GGA-353305",
    "displayName" : "5-methylcytosine glycosylase:thymine complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 90 ],
    "parents" : [ ],
    "children" : [ 353363, 6793570 ]
  }, {
    "dbId" : 353317,
    "stId" : "R-GGA-353317",
    "displayName" : "UNG [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 92 ],
    "identifier" : "Q8AYC6",
    "standardIdentifier" : "uniprot:Q8AYC6",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "ung" ],
    "parents" : [ 353236, 353483, 353501 ],
    "children" : [ ]
  }, {
    "dbId" : 110369,
    "stId" : "R-ALL-110369",
    "displayName" : "DNA containing ligated patch of replacement residues [nucleoplasm]",
    "schemaClass" : "OtherEntity",
    "speciesId" : 0,
    "parents" : [ 418654 ],
    "children" : [ ]
  }, {
    "dbId" : 217120,
    "stId" : "R-GGA-217120",
    "displayName" : "PCNA, Proliferating cell nuclear antigen [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 105 ],
    "identifier" : "Q9DEA3",
    "standardIdentifier" : "uniprot:Q9DEA3",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "PCNA" ],
    "parents" : [ 353334, 217171 ],
    "children" : [ ]
  }, {
    "dbId" : 29478,
    "stId" : "R-ALL-29478",
    "displayName" : "CH2O [nucleoplasm]",
    "schemaClass" : "SimpleEntity",
    "speciesId" : 0,
    "diagramIds" : [ 118 ],
    "identifier" : "16842",
    "standardIdentifier" : "chebi:16842",
    "referenceType" : "ReferenceMolecule",
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 169515,
    "stId" : "R-ALL-169515",
    "displayName" : "Replication Fork [nucleoplasm]",
    "schemaClass" : "OtherEntity",
    "speciesId" : 0,
    "diagramIds" : [ 221 ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 353321,
    "stId" : "R-GGA-353321",
    "displayName" : "NHEJ1 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 55 ],
    "identifier" : "ENSGALP00000018475",
    "standardIdentifier" : "ensembl:ENSGALP00000018475",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 353467 ],
    "children" : [ ]
  }, {
    "dbId" : 353335,
    "stId" : "R-GGA-353335",
    "displayName" : "ERCC3, TFIIH basal transcription factor complex helicase XPB subunit [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 138 ],
    "identifier" : "Q5ZKK7",
    "standardIdentifier" : "uniprot:Q5ZKK7",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "ERCC3", "RCJMB04_10e8" ],
    "parents" : [ 353261 ],
    "children" : [ ]
  }, {
    "dbId" : 217137,
    "stId" : "R-GGA-217137",
    "displayName" : "STAG1 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 24 ],
    "identifier" : "ENSGALP00000001947",
    "standardIdentifier" : "ensembl:ENSGALP00000001947",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 217229 ],
    "children" : [ ]
  }, {
    "dbId" : 353334,
    "stId" : "R-GGA-353334",
    "displayName" : "PCNA-homotrimer [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 139 ],
    "parents" : [ ],
    "children" : [ 217120 ]
  }, {
    "dbId" : 217140,
    "stId" : "R-GGA-217140",
    "displayName" : "ATR [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 6 ],
    "identifier" : "ENSGALP00000004185",
    "standardIdentifier" : "ensembl:ENSGALP00000004185",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 216927 ],
    "children" : [ ]
  }, {
    "dbId" : 353341,
    "stId" : "R-GGA-353341",
    "displayName" : "Phospho-DNA-PKcs [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 52 ],
    "identifier" : "Q8QGX4",
    "standardIdentifier" : "uniprot:Q8QGX4",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "PRKDC", "XRCC7" ],
    "parents" : [ 353384 ],
    "children" : [ ]
  }, {
    "dbId" : 217146,
    "stId" : "R-GGA-217146",
    "displayName" : "Phosphorylated Arg (Abl-related gene) [nucleoplasm]",
    "schemaClass" : "GenomeEncodedEntity",
    "speciesId" : 49591,
    "parents" : [ 216998 ],
    "children" : [ ]
  }, {
    "dbId" : 418620,
    "stId" : "R-GGA-418620",
    "displayName" : "POLD3 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "identifier" : "Q5ZK28",
    "standardIdentifier" : "uniprot:Q5ZK28",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "POLD3", "RCJMB04_13j10" ],
    "parents" : [ 418654, 418652 ],
    "children" : [ ]
  }, {
    "dbId" : 353342,
    "stId" : "R-GGA-353342",
    "displayName" : "chSNM1A, DNA cross-link repair 1A protein [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 149 ],
    "identifier" : "Q5QJC4",
    "standardIdentifier" : "uniprot:Q5QJC4",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "DCLRE1A", "SNM1A" ],
    "parents" : [ 353369 ],
    "children" : [ ]
  }, {
    "dbId" : 110149,
    "stId" : "R-HSA-110149",
    "displayName" : "(T:G)-dsDNA [nucleoplasm]",
    "schemaClass" : "GenomeEncodedEntity",
    "speciesId" : 48887,
    "diagramIds" : [ 82 ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 353347,
    "stId" : "R-GGA-353347",
    "displayName" : "RAD23B [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 148 ],
    "identifier" : "ENSGALP00000025005",
    "standardIdentifier" : "ensembl:ENSGALP00000025005",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 353284 ],
    "children" : [ ]
  }, {
    "dbId" : 110151,
    "stId" : "R-HSA-110151",
    "displayName" : "(Ura:Gua)-dsDNA [nucleoplasm]",
    "schemaClass" : "GenomeEncodedEntity",
    "speciesId" : 48887,
    "diagramIds" : [ 89 ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 265794,
    "stId" : "R-GGA-265794",
    "displayName" : "UBE2N [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 50 ],
    "identifier" : "ENSGALP00000018399",
    "standardIdentifier" : "ensembl:ENSGALP00000018399",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 353346,
    "stId" : "R-GGA-353346",
    "displayName" : "XP-A, DNA-repair protein complementing XP-A cells homolog [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 137 ],
    "identifier" : "P27089",
    "standardIdentifier" : "uniprot:P27089",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "XPA", "XPAC" ],
    "parents" : [ 353261 ],
    "children" : [ ]
  }, {
    "dbId" : 265807,
    "stId" : "R-GGA-265807",
    "displayName" : "RCF4 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 14 ],
    "identifier" : "Q5ZHL1",
    "standardIdentifier" : "uniprot:Q5ZHL1",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "RCJMB04_37a17" ],
    "parents" : [ 265969 ],
    "children" : [ ]
  }, {
    "dbId" : 418646,
    "stId" : "R-GGA-418646",
    "displayName" : "ALKBH2 and 3 [nucleoplasm]",
    "schemaClass" : "DefinedSet",
    "speciesId" : 49591,
    "diagramIds" : [ 130 ],
    "parents" : [ ],
    "children" : [ 353272, 353457 ]
  }, {
    "dbId" : 217171,
    "stId" : "R-GGA-217171",
    "displayName" : "monoubiquitinated PCNA [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 102 ],
    "parents" : [ 353261 ],
    "children" : [ 217120, 216946 ]
  }, {
    "dbId" : 353365,
    "stId" : "R-GGA-353365",
    "displayName" : "PIAS1, protein inhibitor of activated STAT, 1 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 147 ],
    "identifier" : "Q5QGZ1",
    "standardIdentifier" : "uniprot:Q5QGZ1",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "PIAS1" ],
    "parents" : [ 353369 ],
    "children" : [ ]
  }, {
    "dbId" : 353366,
    "stId" : "R-GGA-353366",
    "displayName" : "LIG3 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 97, 277 ],
    "identifier" : "Q5ZLW6",
    "standardIdentifier" : "uniprot:Q5ZLW6",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "RCJMB04_4j11" ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 353363,
    "stId" : "R-GGA-353363",
    "displayName" : "MBD4 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 84 ],
    "identifier" : "Q9I9F1",
    "standardIdentifier" : "uniprot:Q9I9F1",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 353236, 353249, 353305 ],
    "children" : [ ]
  }, {
    "dbId" : 216923,
    "stId" : "R-GGA-216923",
    "displayName" : "NBS, Nijmegen breakage syndrome protein 1 homolog [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 27 ],
    "identifier" : "Q9DE07",
    "standardIdentifier" : "uniprot:Q9DE07",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "NBN", "NBS1" ],
    "parents" : [ 217021 ],
    "children" : [ ]
  }, {
    "dbId" : 110169,
    "stId" : "R-HSA-110169",
    "displayName" : "CpG(T:G)-dsDNA [nucleoplasm]",
    "schemaClass" : "GenomeEncodedEntity",
    "speciesId" : 48887,
    "diagramIds" : [ 79 ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 418654,
    "stId" : "R-GGA-418654",
    "displayName" : "Ligated patch-repaired DNA [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 95 ],
    "parents" : [ ],
    "children" : [ 418650, 418620, 110369 ]
  }, {
    "dbId" : 265820,
    "stId" : "R-GGA-265820",
    "displayName" : "Phospho-CHEK2 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 45 ],
    "identifier" : "A1EAT1",
    "standardIdentifier" : "uniprot:A1EAT1",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "CHEK2" ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 418652,
    "stId" : "R-GGA-418652",
    "displayName" : "DNA containing unligated replacement-synthesized patch [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 94 ],
    "parents" : [ ],
    "children" : [ 418650, 6791068, 418620, 110345, 111251 ]
  }, {
    "dbId" : 30555,
    "stId" : "R-ALL-30555",
    "displayName" : "dNTP [nucleoplasm]",
    "schemaClass" : "SimpleEntity",
    "speciesId" : 0,
    "diagramIds" : [ 310, 312 ],
    "identifier" : "16516",
    "standardIdentifier" : "chebi:16516",
    "referenceType" : "ReferenceMolecule",
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 217183,
    "stId" : "R-GGA-217183",
    "displayName" : "HUS1 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "identifier" : "ENSGALP00000020325",
    "standardIdentifier" : "ensembl:ENSGALP00000020325",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 217205 ],
    "children" : [ ]
  }, {
    "dbId" : 353369,
    "stId" : "R-GGA-353369",
    "displayName" : "chSNM1A-PIAS1 complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 141 ],
    "parents" : [ 353261 ],
    "children" : [ 353342, 353365 ]
  }, {
    "dbId" : 418650,
    "stId" : "R-GGA-418650",
    "displayName" : "APEX1 [nucleoplasm]",
    "schemaClass" : "GenomeEncodedEntity",
    "speciesId" : 49591,
    "parents" : [ 418654, 418652 ],
    "children" : [ ]
  }, {
    "dbId" : 216927,
    "stId" : "R-GGA-216927",
    "displayName" : "PI3-kinase family [nucleoplasm]",
    "schemaClass" : "DefinedSet",
    "speciesId" : 49591,
    "diagramIds" : [ 47 ],
    "parents" : [ ],
    "children" : [ 217023, 217140, 217031 ]
  }, {
    "dbId" : 217182,
    "stId" : "R-GGA-217182",
    "displayName" : "Activated-ATM kinase [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 29 ],
    "identifier" : "Q9PVT8",
    "standardIdentifier" : "uniprot:Q9PVT8",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "ATM" ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 216926,
    "stId" : "R-GGA-216926",
    "displayName" : "Arg (Abl-related gene) [nucleoplasm]",
    "schemaClass" : "GenomeEncodedEntity",
    "speciesId" : 49591,
    "parents" : [ 216964 ],
    "children" : [ ]
  }, {
    "dbId" : 265829,
    "stId" : "R-GGA-265829",
    "displayName" : "FANCI, Fanconi anemia complementation group I [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 215 ],
    "identifier" : "B0I564",
    "standardIdentifier" : "uniprot:B0I564",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "FANCI" ],
    "parents" : [ 265834 ],
    "children" : [ ]
  }, {
    "dbId" : 217185,
    "stId" : "R-GGA-217185",
    "displayName" : "RFC2 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 9 ],
    "identifier" : "P53033",
    "standardIdentifier" : "uniprot:P53033",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "RFC2" ],
    "parents" : [ 217059 ],
    "children" : [ ]
  }, {
    "dbId" : 939884,
    "stId" : "R-GGA-939884",
    "displayName" : "ubiquitin (UBB 3) [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "identifier" : "P0CG62",
    "standardIdentifier" : "uniprot:P0CG62",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "UBB" ],
    "parents" : [ 216946 ],
    "children" : [ ]
  }, {
    "dbId" : 939882,
    "stId" : "R-GGA-939882",
    "displayName" : "ubiquitin (UBB 4) [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "identifier" : "P0CG62",
    "standardIdentifier" : "uniprot:P0CG62",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "UBB" ],
    "parents" : [ 216946 ],
    "children" : [ ]
  }, {
    "dbId" : 265827,
    "stId" : "R-GGA-265827",
    "displayName" : "phospho-RCF4 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 15 ],
    "identifier" : "Q5ZHL1",
    "standardIdentifier" : "uniprot:Q5ZHL1",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "RCJMB04_37a17" ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 110187,
    "stId" : "R-HSA-110187",
    "displayName" : "AP-dsDNA [nucleoplasm]",
    "schemaClass" : "GenomeEncodedEntity",
    "speciesId" : 48887,
    "diagramIds" : [ 279 ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 353384,
    "stId" : "R-GGA-353384",
    "displayName" : "DNA-PK-Ku-DNA complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 53 ],
    "parents" : [ 353424 ],
    "children" : [ 353518, 353341 ]
  }, {
    "dbId" : 265834,
    "stId" : "R-GGA-265834",
    "displayName" : "monoubiquitinated FANCI [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 214 ],
    "parents" : [ ],
    "children" : [ 216946, 265829 ]
  }, {
    "dbId" : 939902,
    "stId" : "R-GGA-939902",
    "displayName" : "ubiquitin (RPS27A) [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "identifier" : "P79781",
    "standardIdentifier" : "uniprot:P79781",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "RPS27A", "UBA80" ],
    "parents" : [ 216946 ],
    "children" : [ ]
  }, {
    "dbId" : 216946,
    "stId" : "R-GGA-216946",
    "displayName" : "Ubiquitin [nucleoplasm]",
    "schemaClass" : "DefinedSet",
    "speciesId" : 49591,
    "diagramIds" : [ 100, 270 ],
    "parents" : [ 217002, 265834, 217171 ],
    "children" : [ 939893, 939895, 939882, 939884, 939903, 939902 ]
  }, {
    "dbId" : 939903,
    "stId" : "R-GGA-939903",
    "displayName" : "ubiquitin (UBA52) [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "identifier" : "P62985",
    "standardIdentifier" : "uniprot:P62985",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "UBA52", "UBCEP2" ],
    "parents" : [ 216946 ],
    "children" : [ ]
  }, {
    "dbId" : 109939,
    "stId" : "R-ALL-109939",
    "displayName" : "damaged DNA substrate  [nucleoplasm]",
    "schemaClass" : "OtherEntity",
    "speciesId" : 0,
    "diagramIds" : [ 104 ],
    "parents" : [ 353227, 353297, 353270, 353421 ],
    "children" : [ ]
  }, {
    "dbId" : 29554,
    "stId" : "R-ALL-29554",
    "displayName" : "Ura [nucleoplasm]",
    "schemaClass" : "SimpleEntity",
    "speciesId" : 0,
    "diagramIds" : [ 81 ],
    "identifier" : "17568",
    "standardIdentifier" : "chebi:17568",
    "referenceType" : "ReferenceMolecule",
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 217207,
    "stId" : "R-GGA-217207",
    "displayName" : "FANCJ (BRIP1), Fanconi anemia group J protein homolog [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 218 ],
    "identifier" : "Q3YK19",
    "standardIdentifier" : "uniprot:Q3YK19",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "BRIP1", "FANCJ" ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 217205,
    "stId" : "R-GGA-217205",
    "displayName" : "Rad9-Hus1-Rad1(9-1-1) clamp [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 8 ],
    "parents" : [ ],
    "children" : [ 216989, 217183, 217091 ]
  }, {
    "dbId" : 353405,
    "stId" : "R-GGA-353405",
    "displayName" : "TDG [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 88 ],
    "identifier" : "Q9PUA4",
    "standardIdentifier" : "uniprot:Q9PUA4",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "5-MCDG" ],
    "parents" : [ 353236, 353519, 353282 ],
    "children" : [ ]
  }, {
    "dbId" : 939895,
    "stId" : "R-GGA-939895",
    "displayName" : "ubiquitin (UBB 1) [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "identifier" : "P0CG62",
    "standardIdentifier" : "uniprot:P0CG62",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "UBB" ],
    "parents" : [ 216946 ],
    "children" : [ ]
  }, {
    "dbId" : 265853,
    "stId" : "R-GGA-265853",
    "displayName" : "phospho-FANCG, Fanconi anemia group G protein [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 213 ],
    "identifier" : "Q7SZH6",
    "standardIdentifier" : "uniprot:Q7SZH6",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "FANCG" ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 265854,
    "stId" : "R-GGA-265854",
    "displayName" : "RAD9-TopBP1 association [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 10 ],
    "parents" : [ 265945 ],
    "children" : [ 265899, 217091 ]
  }, {
    "dbId" : 939893,
    "stId" : "R-GGA-939893",
    "displayName" : "ubiquitin (UBB 2) [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "identifier" : "P0CG62",
    "standardIdentifier" : "uniprot:P0CG62",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "UBB" ],
    "parents" : [ 216946 ],
    "children" : [ ]
  }, {
    "dbId" : 216958,
    "stId" : "R-GGA-216958",
    "displayName" : "phospho-CABL [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "identifier" : "Q9YI46",
    "standardIdentifier" : "uniprot:Q9YI46",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "CABL" ],
    "parents" : [ 216998 ],
    "children" : [ ]
  }, {
    "dbId" : 216957,
    "stId" : "R-GGA-216957",
    "displayName" : "phospho-RAD51 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 33 ],
    "identifier" : "P37383",
    "standardIdentifier" : "uniprot:P37383",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "RAD51A", "RAD51" ],
    "parents" : [ 265869 ],
    "children" : [ ]
  }, {
    "dbId" : 217212,
    "stId" : "R-GGA-217212",
    "displayName" : "phosphorylated H2AX (ser139) [nucleoplasm]",
    "schemaClass" : "GenomeEncodedEntity",
    "speciesId" : 49591,
    "diagramIds" : [ 42 ],
    "parents" : [ 351467, 351449 ],
    "children" : [ ]
  }, {
    "dbId" : 353413,
    "stId" : "R-GGA-353413",
    "displayName" : "REV1 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 113 ],
    "identifier" : "Q4KWZ7",
    "standardIdentifier" : "uniprot:Q4KWZ7",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "REV1" ],
    "parents" : [ 353466 ],
    "children" : [ ]
  }, {
    "dbId" : 216962,
    "stId" : "R-GGA-216962",
    "displayName" : "SMC3, Cohesin complex subunit [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 25 ],
    "identifier" : "Q8AWB8",
    "standardIdentifier" : "uniprot:Q8AWB8",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "SMC3" ],
    "parents" : [ 217229 ],
    "children" : [ ]
  }, {
    "dbId" : 6790114,
    "stId" : "R-GGA-6790114",
    "displayName" : "dsDNA with translocation [nucleoplasm]",
    "schemaClass" : "GenomeEncodedEntity",
    "speciesId" : 49591,
    "parents" : [ 6790110 ],
    "children" : [ ]
  }, {
    "dbId" : 216964,
    "stId" : "R-GGA-216964",
    "displayName" : "Ableson family members [nucleoplasm]",
    "schemaClass" : "DefinedSet",
    "speciesId" : 49591,
    "diagramIds" : [ 44 ],
    "parents" : [ ],
    "children" : [ 216926, 216968 ]
  }, {
    "dbId" : 6790112,
    "stId" : "R-GGA-6790112",
    "displayName" : "dsDNA [nucleoplasm]",
    "schemaClass" : "GenomeEncodedEntity",
    "speciesId" : 49591,
    "parents" : [ 6790110 ],
    "children" : [ ]
  }, {
    "dbId" : 353421,
    "stId" : "R-GGA-353421",
    "displayName" : "XP-C-RAD23B complex to damaged DNA site [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 143 ],
    "parents" : [ 353261 ],
    "children" : [ 109939, 353284 ]
  }, {
    "dbId" : 109961,
    "stId" : "R-ALL-109961",
    "displayName" : "incised DNA without lesion [nucleoplasm]",
    "schemaClass" : "OtherEntity",
    "speciesId" : 0,
    "diagramIds" : [ 142 ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 265869,
    "stId" : "R-GGA-265869",
    "displayName" : "Polymerization of phospho-RAD51as foci  [nucleoplasm]",
    "schemaClass" : "Polymer",
    "speciesId" : 49591,
    "diagramIds" : [ 34 ],
    "parents" : [ ],
    "children" : [ 216957 ]
  }, {
    "dbId" : 216968,
    "stId" : "R-GGA-216968",
    "displayName" : "CABL [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 43 ],
    "identifier" : "Q9YI46",
    "standardIdentifier" : "uniprot:Q9YI46",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "CABL" ],
    "parents" : [ 216964 ],
    "children" : [ ]
  }, {
    "dbId" : 75914,
    "stId" : "R-ALL-75914",
    "displayName" : "Ligatable DNA DSB ends [nucleoplasm]",
    "schemaClass" : "OtherEntity",
    "speciesId" : 0,
    "parents" : [ 353450 ],
    "children" : [ ]
  }, {
    "dbId" : 109964,
    "stId" : "R-ALL-109964",
    "displayName" : "newly synthesized DNA fragment  [nucleoplasm]",
    "schemaClass" : "OtherEntity",
    "speciesId" : 0,
    "diagramIds" : [ 133 ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 217229,
    "stId" : "R-GGA-217229",
    "displayName" : "Cohesin complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 23 ],
    "parents" : [ ],
    "children" : [ 217238, 217072, 217137, 216962 ]
  }, {
    "dbId" : 109966,
    "stId" : "R-ALL-109966",
    "displayName" : "Repaired double-stranded DNA [nucleoplasm]",
    "schemaClass" : "OtherEntity",
    "speciesId" : 0,
    "diagramIds" : [ 136 ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 265877,
    "stId" : "R-GGA-265877",
    "displayName" : "phosphorylated BRCA1 at S1189 and S1542 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 38 ],
    "identifier" : "Q90Z51",
    "standardIdentifier" : "uniprot:Q90Z51",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "BRCA1" ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 75155,
    "stId" : "R-ALL-75155",
    "displayName" : "3' ends of DNA double strand break [nucleoplasm]",
    "schemaClass" : "OtherEntity",
    "speciesId" : 0,
    "diagramIds" : [ 30 ],
    "parents" : [ 265884, 351449 ],
    "children" : [ ]
  }, {
    "dbId" : 111251,
    "stId" : "R-ALL-111251",
    "displayName" : "Replacement synthesized nucleotide [nucleoplasm]",
    "schemaClass" : "OtherEntity",
    "speciesId" : 0,
    "parents" : [ 418652 ],
    "children" : [ ]
  }, {
    "dbId" : 418963,
    "stId" : "R-GGA-418963",
    "displayName" : "USP1 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 211 ],
    "identifier" : "Q5ZJE0",
    "standardIdentifier" : "uniprot:Q5ZJE0",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "RCJMB04_19b7" ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 217238,
    "stId" : "R-GGA-217238",
    "displayName" : "SMC1 protein cohesin subunit [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 21 ],
    "identifier" : "Q8AWB7",
    "standardIdentifier" : "uniprot:Q8AWB7",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "SMC1" ],
    "parents" : [ 217229 ],
    "children" : [ ]
  }, {
    "dbId" : 353424,
    "stId" : "R-GGA-353424",
    "displayName" : "DNA-PK synaptic complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 62 ],
    "parents" : [ 353450 ],
    "children" : [ 353384 ]
  }, {
    "dbId" : 265884,
    "stId" : "R-GGA-265884",
    "displayName" : "RPA-coated 3' end of DNA double strand break [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 77 ],
    "parents" : [ ],
    "children" : [ 265969, 75155 ]
  }, {
    "dbId" : 353439,
    "stId" : "R-GGA-353439",
    "displayName" : "XRCC5 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 65 ],
    "identifier" : "ENSGALP00000018706",
    "standardIdentifier" : "ensembl:ENSGALP00000018706",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 353530 ],
    "children" : [ ]
  }, {
    "dbId" : 265880,
    "stId" : "R-GGA-265880",
    "displayName" : "BRCA2 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 41 ],
    "identifier" : "Q8QFV6",
    "standardIdentifier" : "uniprot:Q8QFV6",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "BRCA2" ],
    "parents" : [ 265982 ],
    "children" : [ ]
  }, {
    "dbId" : 75165,
    "stId" : "R-ALL-75165",
    "displayName" : "DNA double-strand break ends [nucleoplasm]",
    "schemaClass" : "OtherEntity",
    "speciesId" : 0,
    "diagramIds" : [ 61 ],
    "parents" : [ 353518 ],
    "children" : [ ]
  }, {
    "dbId" : 216989,
    "stId" : "R-GGA-216989",
    "displayName" : "RAD1 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "identifier" : "ENSGALP00000005311",
    "standardIdentifier" : "ensembl:ENSGALP00000005311",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 217205 ],
    "children" : [ ]
  }, {
    "dbId" : 265883,
    "stId" : "R-GGA-265883",
    "displayName" : "RPA3 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 13 ],
    "identifier" : "ENSGALP00000017383",
    "standardIdentifier" : "ensembl:ENSGALP00000017383",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 265969 ],
    "children" : [ ]
  }, {
    "dbId" : 216994,
    "stId" : "R-GGA-216994",
    "displayName" : "FancL [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 219 ],
    "identifier" : "Q3MUH5",
    "standardIdentifier" : "uniprot:Q3MUH5",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "FANCL" ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 216998,
    "stId" : "R-GGA-216998",
    "displayName" : "phosphorylated Abl and Arg [nucleoplasm]",
    "schemaClass" : "DefinedSet",
    "speciesId" : 49591,
    "diagramIds" : [ 40 ],
    "parents" : [ ],
    "children" : [ 216958, 217146 ]
  }, {
    "dbId" : 109735,
    "stId" : "R-ALL-109735",
    "displayName" : "6-O-methyguanine containing damaged DNA [nucleoplasm]",
    "schemaClass" : "OtherEntity",
    "speciesId" : 0,
    "diagramIds" : [ 121 ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 216997,
    "stId" : "R-GGA-216997",
    "displayName" : "RAD51 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 46 ],
    "identifier" : "P37383",
    "standardIdentifier" : "uniprot:P37383",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "RAD51A", "RAD51" ],
    "parents" : [ 265909, 265982 ],
    "children" : [ ]
  }, {
    "dbId" : 265900,
    "stId" : "R-GGA-265900",
    "displayName" : "FANCG, Fanconi anemia group G protein [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 217 ],
    "identifier" : "Q7SZH6",
    "standardIdentifier" : "uniprot:Q7SZH6",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "FANCG" ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 109736,
    "stId" : "R-ALL-109736",
    "displayName" : "DNA with no 6-O-methylated guanine [nucleoplasm]",
    "schemaClass" : "OtherEntity",
    "speciesId" : 0,
    "diagramIds" : [ 125 ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 217002,
    "stId" : "R-GGA-217002",
    "displayName" : "monoubiquitinated FancD2 [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 216 ],
    "parents" : [ ],
    "children" : [ 217029, 216946 ]
  }, {
    "dbId" : 353454,
    "stId" : "R-GGA-353454",
    "displayName" : "Pol eta:lesioned DNA template inserted with correct base complement [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 112 ],
    "parents" : [ ],
    "children" : [ 353448, 110289 ]
  }, {
    "dbId" : 353449,
    "stId" : "R-GGA-353449",
    "displayName" : "Pol kappa:lesioned DNA template inserted with correct base complement [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 117 ],
    "parents" : [ ],
    "children" : [ 353466, 110289 ]
  }, {
    "dbId" : 217006,
    "stId" : "R-GGA-217006",
    "displayName" : "STT3 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 7 ],
    "identifier" : "Q8AYC9",
    "standardIdentifier" : "uniprot:Q8AYC9",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "CHEK1", "CHK1" ],
    "parents" : [ 217108 ],
    "children" : [ ]
  }, {
    "dbId" : 353448,
    "stId" : "R-GGA-353448",
    "displayName" : "POLH [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 101 ],
    "identifier" : "Q7T2X8",
    "standardIdentifier" : "uniprot:Q7T2X8",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "poleta" ],
    "parents" : [ 353454, 353270 ],
    "children" : [ ]
  }, {
    "dbId" : 29358,
    "stId" : "R-ALL-29358",
    "displayName" : "ATP [nucleoplasm]",
    "schemaClass" : "SimpleEntity",
    "speciesId" : 0,
    "diagramIds" : [ 256, 241, 18, 231, 264, 233, 235, 237, 254 ],
    "identifier" : "30616",
    "standardIdentifier" : "chebi:30616",
    "referenceType" : "ReferenceMolecule",
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 113582,
    "stId" : "R-ALL-113582",
    "displayName" : "ADP [nucleoplasm]",
    "schemaClass" : "SimpleEntity",
    "speciesId" : 0,
    "diagramIds" : [ 17, 258, 243, 260, 245, 262, 249, 252, 239 ],
    "identifier" : "456216",
    "standardIdentifier" : "chebi:456216",
    "referenceType" : "ReferenceMolecule",
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 265899,
    "stId" : "R-GGA-265899",
    "displayName" : "TOPBP1 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 3 ],
    "identifier" : "ENSGALP00000019134",
    "standardIdentifier" : "ensembl:ENSGALP00000019134",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 265854 ],
    "children" : [ ]
  }, {
    "dbId" : 353450,
    "stId" : "R-GGA-353450",
    "displayName" : "DNA-PK: DNA synaptic complex with processed (ligatable) DNA [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 59 ],
    "parents" : [ 353495 ],
    "children" : [ 75914, 353424 ]
  }, {
    "dbId" : 353461,
    "stId" : "R-GGA-353461",
    "displayName" : "DNA ligase IV [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 58 ],
    "identifier" : "Q90YB1",
    "standardIdentifier" : "uniprot:Q90YB1",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "LIG4", "RCJMB04_10b2" ],
    "parents" : [ 353467 ],
    "children" : [ ]
  }, {
    "dbId" : 265909,
    "stId" : "R-GGA-265909",
    "displayName" : "RAD51-BRCA1 complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 49 ],
    "parents" : [ ],
    "children" : [ 265944, 216997 ]
  }, {
    "dbId" : 353463,
    "stId" : "R-GGA-353463",
    "displayName" : "methylcysteine-MGMT [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 127 ],
    "identifier" : "ENSGALP00000028424",
    "standardIdentifier" : "ensembl:ENSGALP00000028424",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 353457,
    "stId" : "R-GGA-353457",
    "displayName" : "ALKBH3 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "identifier" : "ENSGALP00000012951",
    "standardIdentifier" : "ensembl:ENSGALP00000012951",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 418646 ],
    "children" : [ ]
  }, {
    "dbId" : 351411,
    "stId" : "R-GGA-351411",
    "displayName" : "Dimeric ATM [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 31 ],
    "parents" : [ ],
    "children" : [ 217023 ]
  }, {
    "dbId" : 353459,
    "stId" : "R-GGA-353459",
    "displayName" : "XPC [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 150 ],
    "identifier" : "ENSGALP00000010261",
    "standardIdentifier" : "ensembl:ENSGALP00000010261",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 353284 ],
    "children" : [ ]
  }, {
    "dbId" : 6790111,
    "stId" : "R-GGA-6790111",
    "displayName" : "dsDNA with microdeletion [nucleoplasm]",
    "schemaClass" : "GenomeEncodedEntity",
    "speciesId" : 49591,
    "parents" : [ 6790110 ],
    "children" : [ ]
  }, {
    "dbId" : 6790110,
    "stId" : "R-GGA-6790110",
    "displayName" : "dsDNA, mutated dsDNA [nucleoplasm]",
    "schemaClass" : "DefinedSet",
    "speciesId" : 49591,
    "diagramIds" : [ 309 ],
    "parents" : [ ],
    "children" : [ 6790111, 6790112, 6790114 ]
  }, {
    "dbId" : 353215,
    "stId" : "R-GGA-353215",
    "displayName" : "MGMT [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 124 ],
    "identifier" : "ENSGALP00000028424",
    "standardIdentifier" : "ensembl:ENSGALP00000028424",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 351422,
    "stId" : "R-GGA-351422",
    "displayName" : "MRE11-RAD50 complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 74 ],
    "parents" : [ 217021 ],
    "children" : [ 217028, 217092 ]
  }, {
    "dbId" : 217023,
    "stId" : "R-GGA-217023",
    "displayName" : "ATM [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 35 ],
    "identifier" : "Q9PVT8",
    "standardIdentifier" : "uniprot:Q9PVT8",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "ATM" ],
    "parents" : [ 216927, 351411 ],
    "children" : [ ]
  }, {
    "dbId" : 217021,
    "stId" : "R-GGA-217021",
    "displayName" : "MRE11-RAD50-NBS1 complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 28 ],
    "parents" : [ ],
    "children" : [ 351422, 216923 ]
  }, {
    "dbId" : 353467,
    "stId" : "R-GGA-353467",
    "displayName" : "XRCC4:DNA ligase IV complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 67 ],
    "parents" : [ 353495 ],
    "children" : [ 353321, 353461 ]
  }, {
    "dbId" : 353466,
    "stId" : "R-GGA-353466",
    "displayName" : "DNA Pol kappa-REV1 complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 115 ],
    "parents" : [ 353449, 353227 ],
    "children" : [ 353233, 353413 ]
  }, {
    "dbId" : 217027,
    "stId" : "R-GGA-217027",
    "displayName" : "H2AX [nucleoplasm]",
    "schemaClass" : "GenomeEncodedEntity",
    "speciesId" : 49591,
    "diagramIds" : [ 36 ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 159939,
    "stId" : "R-ALL-159939",
    "displayName" : "SUCCA [nucleoplasm]",
    "schemaClass" : "SimpleEntity",
    "speciesId" : 0,
    "diagramIds" : [ 126 ],
    "identifier" : "30031",
    "standardIdentifier" : "chebi:30031",
    "referenceType" : "ReferenceMolecule",
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 159942,
    "stId" : "R-ALL-159942",
    "displayName" : "CO2 [nucleoplasm]",
    "schemaClass" : "SimpleEntity",
    "speciesId" : 0,
    "diagramIds" : [ 131 ],
    "identifier" : "16526",
    "standardIdentifier" : "chebi:16526",
    "referenceType" : "ReferenceMolecule",
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 217031,
    "stId" : "R-GGA-217031",
    "displayName" : "DNA-PKcs, DNA-dependent protein kinase catalytic subunit [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 60 ],
    "identifier" : "Q8QGX4",
    "standardIdentifier" : "uniprot:Q8QGX4",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "PRKDC", "XRCC7" ],
    "parents" : [ 216927 ],
    "children" : [ ]
  }, {
    "dbId" : 351424,
    "stId" : "R-GGA-351424",
    "displayName" : "TP53BP1 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 75 ],
    "identifier" : "ENSGALP00000013866",
    "standardIdentifier" : "ensembl:ENSGALP00000013866",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 351454 ],
    "children" : [ ]
  }, {
    "dbId" : 217029,
    "stId" : "R-GGA-217029",
    "displayName" : "FANCD2 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 212 ],
    "identifier" : "Q68Y81",
    "standardIdentifier" : "uniprot:Q68Y81",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "FANCD2" ],
    "parents" : [ 217002 ],
    "children" : [ ]
  }, {
    "dbId" : 265922,
    "stId" : "R-GGA-265922",
    "displayName" : "CHEK2 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 32 ],
    "identifier" : "A1EAT1",
    "standardIdentifier" : "uniprot:A1EAT1",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "CHEK2" ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 217028,
    "stId" : "R-GGA-217028",
    "displayName" : "RAD50 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 68 ],
    "identifier" : "Q5W4T6",
    "standardIdentifier" : "uniprot:Q5W4T6",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "RAD50" ],
    "parents" : [ 351422 ],
    "children" : [ ]
  }, {
    "dbId" : 217035,
    "stId" : "R-GGA-217035",
    "displayName" : "RPA1 (Replication protein A1) [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 2 ],
    "identifier" : "Q5ZJJ2",
    "standardIdentifier" : "uniprot:Q5ZJJ2",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "RPA1", "RCJMB04_17l6" ],
    "parents" : [ 265969 ],
    "children" : [ ]
  }, {
    "dbId" : 351432,
    "stId" : "R-GGA-351432",
    "displayName" : "phospho-NBS1 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 247 ],
    "identifier" : "Q9DE07",
    "standardIdentifier" : "uniprot:Q9DE07",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "NBN", "NBS1" ],
    "parents" : [ 351452 ],
    "children" : [ ]
  }, {
    "dbId" : 353227,
    "stId" : "R-GGA-353227",
    "displayName" : "Pol kappa-damaged DNA [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 114 ],
    "parents" : [ ],
    "children" : [ 353466, 109939 ]
  }, {
    "dbId" : 353483,
    "stId" : "R-GGA-353483",
    "displayName" : "DNA containing Uracil-glycosylase-bound apurinic/apyrimidinic site [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 80 ],
    "parents" : [ ],
    "children" : [ 6791069, 353317 ]
  }, {
    "dbId" : 110289,
    "stId" : "R-ALL-110289",
    "displayName" : "damaged DNA substrate inserted with correct base complement [nucleoplasm]",
    "schemaClass" : "OtherEntity",
    "speciesId" : 0,
    "parents" : [ 353449, 353454 ],
    "children" : [ ]
  }, {
    "dbId" : 353236,
    "stId" : "R-GGA-353236",
    "displayName" : "DNA-glycosylase [nucleoplasm]",
    "schemaClass" : "CandidateSet",
    "speciesId" : 49591,
    "diagramIds" : [ 284, 93 ],
    "parents" : [ ],
    "children" : [ 353317, 353405, 353363 ]
  }, {
    "dbId" : 353495,
    "stId" : "R-GGA-353495",
    "displayName" : "DNA-PK:XRCC4:DNA ligase IV:DNA complex associated with ligatable DNA ends [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 56 ],
    "parents" : [ ],
    "children" : [ 353450, 353467 ]
  }, {
    "dbId" : 353233,
    "stId" : "R-GGA-353233",
    "displayName" : "POLK [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 116 ],
    "identifier" : "Q8AWW1",
    "standardIdentifier" : "uniprot:Q8AWW1",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "DINB1" ],
    "parents" : [ 353466 ],
    "children" : [ ]
  }, {
    "dbId" : 217047,
    "stId" : "R-GGA-217047",
    "displayName" : "ATRIP [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "identifier" : "ENSGALP00000007430",
    "standardIdentifier" : "ensembl:ENSGALP00000007430",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 217108 ],
    "children" : [ ]
  }, {
    "dbId" : 353501,
    "stId" : "R-GGA-353501",
    "displayName" : "uracil-glycosylase:uracil complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 83 ],
    "parents" : [ ],
    "children" : [ 6791066, 353317 ]
  }, {
    "dbId" : 351452,
    "stId" : "R-GGA-351452",
    "displayName" : "gamma H2Ax and phospho-NBS1 at the double strand break [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 69 ],
    "parents" : [ ],
    "children" : [ 351432, 351449 ]
  }, {
    "dbId" : 351454,
    "stId" : "R-GGA-351454",
    "displayName" : "53BP1 and gamma H2AX complex at the site of double strand DNA break [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 73 ],
    "parents" : [ ],
    "children" : [ 351449, 351424 ]
  }, {
    "dbId" : 351449,
    "stId" : "R-GGA-351449",
    "displayName" : "gamma H2AX foci at the DNA double strand breaks [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 70 ],
    "parents" : [ 351452, 351454 ],
    "children" : [ 217212, 75155 ]
  }, {
    "dbId" : 265944,
    "stId" : "R-GGA-265944",
    "displayName" : "BRCA1 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 39 ],
    "identifier" : "Q90Z51",
    "standardIdentifier" : "uniprot:Q90Z51",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "BRCA1" ],
    "parents" : [ 265909 ],
    "children" : [ ]
  }, {
    "dbId" : 265945,
    "stId" : "R-GGA-265945",
    "displayName" : "TopBP1 association with ATR via its activation domain (AD) [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 16 ],
    "parents" : [ ],
    "children" : [ 265854, 217108 ]
  }, {
    "dbId" : 217059,
    "stId" : "R-GGA-217059",
    "displayName" : "Rad17-replication factor C (RFC), the clamp loader [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 4 ],
    "parents" : [ ],
    "children" : [ 217063, 217185 ]
  }, {
    "dbId" : 353511,
    "stId" : "R-GGA-353511",
    "displayName" : "ERCC5 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 145 ],
    "identifier" : "ENSGALP00000027186",
    "standardIdentifier" : "ensembl:ENSGALP00000027186",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 353261 ],
    "children" : [ ]
  }, {
    "dbId" : 353254,
    "stId" : "R-GGA-353254",
    "displayName" : "POLE2, DNA polymerase epsilon subunit 2 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 134 ],
    "identifier" : "Q5ZKQ6",
    "standardIdentifier" : "uniprot:Q5ZKQ6",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "POLE2", "RCJMB04_9k18" ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 217063,
    "stId" : "R-GGA-217063",
    "displayName" : "RAD17 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 11 ],
    "identifier" : "Q76F78",
    "standardIdentifier" : "uniprot:Q76F78",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "rad17" ],
    "parents" : [ 217059 ],
    "children" : [ ]
  }, {
    "dbId" : 353249,
    "stId" : "R-GGA-353249",
    "displayName" : "DNA containing a 5-methylcytosine glycosylase-bound apurinic/apyrimidinic site [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 87 ],
    "parents" : [ ],
    "children" : [ 6791069, 353363 ]
  }, {
    "dbId" : 217062,
    "stId" : "R-GGA-217062",
    "displayName" : "phospho-STT3 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 5 ],
    "identifier" : "Q8AYC9",
    "standardIdentifier" : "uniprot:Q8AYC9",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "CHEK1", "CHK1" ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 353506,
    "stId" : "R-GGA-353506",
    "displayName" : "TFIIH, General transcription factor IIH subunit 5 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 144 ],
    "identifier" : "Q5ZKH0",
    "standardIdentifier" : "uniprot:Q5ZKH0",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "GTF2H5", "RCJMB04_10n20" ],
    "parents" : [ 353261 ],
    "children" : [ ]
  }, {
    "dbId" : 110310,
    "stId" : "R-ALL-110310",
    "displayName" : "Elongated DNA template with bypassed lesion [nucleoplasm]",
    "schemaClass" : "OtherEntity",
    "speciesId" : 0,
    "diagramIds" : [ 108 ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 353261,
    "stId" : "R-GGA-353261",
    "displayName" : "Pre-incision complex in GG-NER [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 140 ],
    "parents" : [ ],
    "children" : [ 353512, 353369, 353421, 353346, 353506, 265969, 353511, 353335, 217171 ]
  }, {
    "dbId" : 265964,
    "stId" : "R-GGA-265964",
    "displayName" : "CDC2 kinase, Cell division control protein 2 homolog [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 12 ],
    "identifier" : "P13863",
    "standardIdentifier" : "uniprot:P13863",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "CDK1", "CDC2" ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 353519,
    "stId" : "R-GGA-353519",
    "displayName" : "DNA containing a TDG-bound apurinic/apyrimidinic site [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 85 ],
    "parents" : [ ],
    "children" : [ 6791069, 353405 ]
  }, {
    "dbId" : 353518,
    "stId" : "R-GGA-353518",
    "displayName" : "Ku:DNA DSB ends [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 57 ],
    "parents" : [ 353384 ],
    "children" : [ 353530, 75165 ]
  }, {
    "dbId" : 353513,
    "stId" : "R-GGA-353513",
    "displayName" : "Ku70, XRCC6, Ku autoantigen protein p70 homolog [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 63 ],
    "identifier" : "O93257",
    "standardIdentifier" : "uniprot:O93257",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "XRCC6", "G22P1", "KU70" ],
    "parents" : [ 353530 ],
    "children" : [ ]
  }, {
    "dbId" : 353257,
    "stId" : "R-GGA-353257",
    "displayName" : "TDP1 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 54 ],
    "identifier" : "ENSGALP00000017339",
    "standardIdentifier" : "ensembl:ENSGALP00000017339",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 353512,
    "stId" : "R-GGA-353512",
    "displayName" : "DDB1, DNA damage-binding protein 1 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 135 ],
    "identifier" : "Q805F9",
    "standardIdentifier" : "uniprot:Q805F9",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "DDB1", "RCJMB04_6h2" ],
    "parents" : [ 353261 ],
    "children" : [ ]
  }, {
    "dbId" : 351467,
    "stId" : "R-GGA-351467",
    "displayName" : "gamma-H2AX-MCPH1 complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 72 ],
    "parents" : [ ],
    "children" : [ 217212, 351476 ]
  }, {
    "dbId" : 351476,
    "stId" : "R-GGA-351476",
    "displayName" : "Microcephalin [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 71 ],
    "identifier" : "A6MCV0",
    "standardIdentifier" : "uniprot:A6MCV0",
    "referenceType" : "ReferenceGeneProduct",
    "geneNames" : [ "MCPH1" ],
    "parents" : [ 351467 ],
    "children" : [ ]
  }, {
    "dbId" : 353270,
    "stId" : "R-GGA-353270",
    "displayName" : "Pol eta -DNA damage complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 99 ],
    "parents" : [ ],
    "children" : [ 353448, 109939 ]
  }, {
    "dbId" : 217072,
    "stId" : "R-GGA-217072",
    "displayName" : "RAD21 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 22 ],
    "identifier" : "ENSGALP00000025921",
    "standardIdentifier" : "ensembl:ENSGALP00000025921",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 217229 ],
    "children" : [ ]
  }, {
    "dbId" : 29428,
    "stId" : "R-ALL-29428",
    "displayName" : "DNA [nucleoplasm]",
    "schemaClass" : "OtherEntity",
    "speciesId" : 0,
    "diagramIds" : [ 26 ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 353521,
    "stId" : "R-GGA-353521",
    "displayName" : "Pol zeta complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 110 ],
    "parents" : [ 353297 ],
    "children" : [ 353529, 353285 ]
  }, {
    "dbId" : 265969,
    "stId" : "R-GGA-265969",
    "displayName" : "RPA heterotrimer [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 304, 1 ],
    "parents" : [ 265884, 353261 ],
    "children" : [ 265883, 265807, 217035 ]
  }, {
    "dbId" : 353522,
    "stId" : "R-GGA-353522",
    "displayName" : "DNA-glycosylase and DNA-lyase complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 98 ],
    "parents" : [ ],
    "children" : [ 6791069, 353281 ]
  }, {
    "dbId" : 265971,
    "stId" : "R-ALL-265971",
    "displayName" : "DNA repair intermediates [nucleoplasm]",
    "schemaClass" : "OtherEntity",
    "speciesId" : 0,
    "diagramIds" : [ 220 ],
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 6791069,
    "stId" : "R-GGA-6791069",
    "displayName" : "AP-dsDNA [nucleoplasm]",
    "schemaClass" : "GenomeEncodedEntity",
    "speciesId" : 49591,
    "parents" : [ 353522, 353249, 353483, 353519 ],
    "children" : [ ]
  }, {
    "dbId" : 265982,
    "stId" : "R-GGA-265982",
    "displayName" : "RAD51-BRCA2 complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 48 ],
    "parents" : [ ],
    "children" : [ 265880, 216997 ]
  }, {
    "dbId" : 6791068,
    "stId" : "R-GGA-6791068",
    "displayName" : "SSB(AP->5'-dRP)-dsDNA [nucleoplasm]",
    "schemaClass" : "GenomeEncodedEntity",
    "speciesId" : 49591,
    "parents" : [ 418652 ],
    "children" : [ ]
  }, {
    "dbId" : 353529,
    "stId" : "R-GGA-353529",
    "displayName" : "REV3L [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "diagramIds" : [ 103 ],
    "identifier" : "ENSGALP00000024199",
    "standardIdentifier" : "ensembl:ENSGALP00000024199",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 353521 ],
    "children" : [ ]
  }, {
    "dbId" : 6791067,
    "stId" : "R-GGA-6791067",
    "displayName" : "(T:G)-dsDNA [nucleoplasm]",
    "schemaClass" : "GenomeEncodedEntity",
    "speciesId" : 49591,
    "parents" : [ 353282 ],
    "children" : [ ]
  }, {
    "dbId" : 29692,
    "stId" : "R-ALL-29692",
    "displayName" : "Thy [nucleoplasm]",
    "schemaClass" : "SimpleEntity",
    "speciesId" : 0,
    "diagramIds" : [ 86 ],
    "identifier" : "17821",
    "standardIdentifier" : "chebi:17821",
    "referenceType" : "ReferenceMolecule",
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 353272,
    "stId" : "R-GGA-353272",
    "displayName" : "ALKBH2 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 49591,
    "identifier" : "ENSGALP00000007984",
    "standardIdentifier" : "ensembl:ENSGALP00000007984",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 418646 ],
    "children" : [ ]
  }, {
    "dbId" : 6791066,
    "stId" : "R-GGA-6791066",
    "displayName" : "(Ura:Gua)-dsDNA [nucleoplasm]",
    "schemaClass" : "GenomeEncodedEntity",
    "speciesId" : 49591,
    "parents" : [ 353501 ],
    "children" : [ ]
  }, {
    "dbId" : 353530,
    "stId" : "R-GGA-353530",
    "displayName" : "Ku-heterodimer complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 49591,
    "diagramIds" : [ 64 ],
    "parents" : [ 353518 ],
    "children" : [ 353513, 353439 ]
  } ],
  "edges" : [ {
    "dbId" : 265862,
    "stId" : "R-GGA-265862",
    "displayName" : "Association of RAD51 with BRCA2",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "inputs" : [ 265880, 216997 ],
    "outputs" : [ 265982 ],
    "efs" : [ ],
    "diagramIds" : [ 169 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 265858,
    "stId" : "R-GGA-265858",
    "displayName" : "Activation of ATR by interaction with RAD9-TopBP1 complex",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 265823 ],
    "following" : [ 216941 ],
    "inputs" : [ 265854, 217108 ],
    "outputs" : [ 265945 ],
    "efs" : [ ],
    "diagramIds" : [ 154 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353283,
    "stId" : "R-GGA-353283",
    "displayName" : "Association of DNA-PKcs with Ku-bound ends of DNA double-strand breaks",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 353226, 353455 ],
    "following" : [ 353265 ],
    "inputs" : [ 353518, 353341 ],
    "outputs" : [ 353384 ],
    "efs" : [ ],
    "diagramIds" : [ 171 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 265987,
    "stId" : "R-GGA-265987",
    "displayName" : "Phosphorylation of BRCA1",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "following" : [ 265968 ],
    "inputs" : [ 29358, 265944 ],
    "outputs" : [ 113582, 265877 ],
    "efs" : [ ],
    "diagramIds" : [ 164 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 217097,
    "stId" : "R-GGA-217097",
    "displayName" : "Formation of the Rad17-RFC alternate clamp-loader complex",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "inputs" : [ 217063, 217185 ],
    "outputs" : [ 217059 ],
    "efs" : [ ],
    "diagramIds" : [ 151 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 265867,
    "stId" : "R-GGA-265867",
    "displayName" : "Formation of RPA-heterotrimer",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "inputs" : [ 265883, 265807, 217035 ],
    "outputs" : [ 265969 ],
    "efs" : [ ],
    "diagramIds" : [ 152 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353301,
    "stId" : "R-GGA-353301",
    "displayName" : "Binding of Pol kappa and REV1 complex to the lesion on the template DNA strand",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 353460 ],
    "following" : [ 353318 ],
    "inputs" : [ 353466, 109939 ],
    "outputs" : [ 353227 ],
    "efs" : [ ],
    "diagramIds" : [ 200 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353300,
    "stId" : "R-GGA-353300",
    "displayName" : "MGMT mediated DNA Damage Reversal",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "inputs" : [ 353215, 109735 ],
    "outputs" : [ 109736, 353463 ],
    "catalysts" : [ 353215 ],
    "efs" : [ ],
    "diagramIds" : [ 203 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353430,
    "stId" : "R-GGA-353430",
    "displayName" : "Binding of Pol eta to a DNA template containing a lesion",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "following" : [ 353504 ],
    "inputs" : [ 353448, 109939 ],
    "outputs" : [ 353270 ],
    "efs" : [ ],
    "diagramIds" : [ 196 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353426,
    "stId" : "R-GGA-353426",
    "displayName" : "TDG glycosylase mediated recognition and binding of thymine opposite guanine",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "following" : [ 353444 ],
    "inputs" : [ 353405, 110149 ],
    "outputs" : [ 353282 ],
    "catalysts" : [ 353405 ],
    "efs" : [ ],
    "diagramIds" : [ 184 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353298,
    "stId" : "R-GGA-353298",
    "displayName" : "Removal of repair proteins and ligation of the processed ends of the DNA double-strand break",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 353475 ],
    "inputs" : [ 353495 ],
    "outputs" : [ 353321, 353513, 353439, 6790110, 217031, 353461 ],
    "catalysts" : [ 353495 ],
    "efs" : [ ],
    "diagramIds" : [ 174 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 265887,
    "stId" : "R-GGA-265887",
    "displayName" : "Binding of RPA heterotrimer to 3' double stranded DNA break",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 217209 ],
    "following" : [ 265936 ],
    "inputs" : [ 265969, 75155 ],
    "outputs" : [ 265884 ],
    "efs" : [ ],
    "diagramIds" : [ 182 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353435,
    "stId" : "R-GGA-353435",
    "displayName" : "Elongation by Pol eta",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 353504 ],
    "inputs" : [ 353454 ],
    "outputs" : [ 353448, 110310 ],
    "catalysts" : [ 353448 ],
    "efs" : [ ],
    "diagramIds" : [ 198 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 216988,
    "stId" : "R-GGA-216988",
    "displayName" : "Monoubiquitination of PCNA",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "following" : [ 353243 ],
    "inputs" : [ 217120, 216946 ],
    "outputs" : [ 217171 ],
    "catalysts" : [ 217090 ],
    "efs" : [ ],
    "diagramIds" : [ 191 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353434,
    "stId" : "R-GGA-353434",
    "displayName" : "Formation of Pol zeta complex",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "following" : [ 353268 ],
    "inputs" : [ 353529, 353285 ],
    "outputs" : [ 353521 ],
    "efs" : [ ],
    "diagramIds" : [ 195 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353444,
    "stId" : "R-GGA-353444",
    "displayName" : "Cleavage of thymine by TDG glycosylase",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 353426 ],
    "inputs" : [ 353282 ],
    "outputs" : [ 29692, 353519 ],
    "catalysts" : [ 353405 ],
    "efs" : [ ],
    "diagramIds" : [ 187 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 265894,
    "stId" : "R-GGA-265894",
    "displayName" : "BRIP1 (FANCJ) helicase functions in direct unwinding of DNA",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 217150 ],
    "inputs" : [ 169515, 75155 ],
    "outputs" : [ 265971 ],
    "catalysts" : [ 217207 ],
    "efs" : [ ],
    "diagramIds" : [ 224 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353318,
    "stId" : "R-GGA-353318",
    "displayName" : "Insertion of correct bases opposite to the lesion by Pol kappa",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 353301 ],
    "following" : [ 353494 ],
    "inputs" : [ 353466 ],
    "outputs" : [ 353449 ],
    "catalysts" : [ 353233 ],
    "efs" : [ ],
    "diagramIds" : [ 201 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353313,
    "stId" : "R-GGA-353313",
    "displayName" : "Removal of 3'-phosphoglycolate (PG) moiety from DSB ends",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 353265 ],
    "following" : [ 353475 ],
    "inputs" : [ 353424 ],
    "outputs" : [ 353450 ],
    "catalysts" : [ 353257 ],
    "efs" : [ ],
    "diagramIds" : [ 176 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353314,
    "stId" : "R-GGA-353314",
    "displayName" : "XP-C-RAD23B heterodimer binds to damaged DNA site with lesion",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 353524 ],
    "inputs" : [ 109939, 353284 ],
    "outputs" : [ 353421 ],
    "efs" : [ ],
    "diagramIds" : [ 208 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 351407,
    "stId" : "R-GGA-351407",
    "displayName" : "Association of MRE11 with RAD50",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "following" : [ 351412 ],
    "inputs" : [ 217028, 217092 ],
    "outputs" : [ 351422 ],
    "efs" : [ ],
    "diagramIds" : [ 181 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353455,
    "stId" : "R-GGA-353455",
    "displayName" : "Autophosphorylation of DNA-PKcs",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 353226 ],
    "following" : [ 353283 ],
    "inputs" : [ 29358, 217031 ],
    "outputs" : [ 113582, 353341 ],
    "catalysts" : [ 217031 ],
    "efs" : [ ],
    "diagramIds" : [ 172 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353323,
    "stId" : "R-GGA-353323",
    "displayName" : "Ligation of newly synthesized repair patch to incised DNA in GG-NER",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 353526 ],
    "inputs" : [ 109964, 109961 ],
    "outputs" : [ 109966 ],
    "catalysts" : [ 353366 ],
    "efs" : [ ],
    "diagramIds" : [ 205 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 351412,
    "stId" : "R-GGA-351412",
    "displayName" : "Association of MRE11 and NBS1 leads to nuclear localization of MRN complex",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 217209, 351407 ],
    "following" : [ 216941 ],
    "inputs" : [ 351422, 216923 ],
    "outputs" : [ 217021 ],
    "efs" : [ ],
    "diagramIds" : [ 180 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353460,
    "stId" : "R-GGA-353460",
    "displayName" : "REV1-Pol kappa complex formation",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "following" : [ 353301 ],
    "inputs" : [ 353233, 353413 ],
    "outputs" : [ 353466 ],
    "efs" : [ ],
    "diagramIds" : [ 199 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 217136,
    "stId" : "R-GGA-217136",
    "displayName" : "Phosphorylation of Chk1 by ATM upon DNA damage",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "inputs" : [ 29358, 217006 ],
    "outputs" : [ 113582, 217062 ],
    "catalysts" : [ 217023 ],
    "efs" : [ ],
    "diagramIds" : [ 162 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 217013,
    "stId" : "R-GGA-217013",
    "displayName" : "Phosphorylation of RAD51 by tyrosine kinase Abelson family protein members",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 217147 ],
    "following" : [ 265940 ],
    "inputs" : [ 29358, 216997 ],
    "outputs" : [ 113582, 216957 ],
    "catalysts" : [ 216968 ],
    "efs" : [ ],
    "diagramIds" : [ 161 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 217147,
    "stId" : "R-GGA-217147",
    "displayName" : "Phosphorylation of c-Abl and Arg by ATM",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "following" : [ 217013 ],
    "inputs" : [ 216964 ],
    "outputs" : [ 216998 ],
    "catalysts" : [ 217182 ],
    "efs" : [ ],
    "diagramIds" : [ 163 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 217017,
    "stId" : "R-GGA-217017",
    "displayName" : "Deubiquitination of FancD2",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "inputs" : [ 217002 ],
    "outputs" : [ 217029, 216946 ],
    "catalysts" : [ 418963 ],
    "efs" : [ ],
    "diagramIds" : [ 225 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 217150,
    "stId" : "R-GGA-217150",
    "displayName" : "Monoubiquitination of FancD2",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "following" : [ 265894 ],
    "inputs" : [ 217029, 216946 ],
    "outputs" : [ 217002 ],
    "catalysts" : [ 216994 ],
    "efs" : [ ],
    "diagramIds" : [ 222 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 351429,
    "stId" : "R-GGA-351429",
    "displayName" : "Association of 53BP1 with gamma H2AX at double strand break",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 351434 ],
    "inputs" : [ 351449, 351424 ],
    "outputs" : [ 351454 ],
    "efs" : [ ],
    "diagramIds" : [ 177 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353476,
    "stId" : "R-GGA-353476",
    "displayName" : "Recruitment of repair factors to form the preincision complex",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "following" : [ 353526 ],
    "inputs" : [ 353512, 353369, 353421, 353346, 353506, 265969, 353511, 353335, 217171 ],
    "outputs" : [ 353261 ],
    "efs" : [ ],
    "diagramIds" : [ 207 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 217152,
    "stId" : "R-GGA-217152",
    "displayName" : "Formation of a multi-protein complex, cohesin",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "inputs" : [ 217238, 217072, 217137, 216962 ],
    "outputs" : [ 217229 ],
    "efs" : [ ],
    "diagramIds" : [ 157 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353472,
    "stId" : "R-GGA-353472",
    "displayName" : "Displacement of DNA glycosylase and endonucleolytic cleavage by DNA-lyase",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "inputs" : [ 110187, 353281, 353236 ],
    "outputs" : [ 353522, 353236 ],
    "catalysts" : [ 353281 ],
    "efs" : [ ],
    "diagramIds" : [ 190 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353475,
    "stId" : "R-GGA-353475",
    "displayName" : "Association of the XRCC4:DNA ligase IV complex with the DNA-PK:DNA synaptic complex",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 353313 ],
    "following" : [ 353298 ],
    "inputs" : [ 353450, 353467 ],
    "outputs" : [ 353495 ],
    "efs" : [ ],
    "diagramIds" : [ 170 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353356,
    "stId" : "R-GGA-353356",
    "displayName" : "Reversal of Alkylation Damage By DNA Dioxygenases",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "inputs" : [ 113679, 113675, 113671, 113685, 113680 ],
    "outputs" : [ 113677, 29478, 159942, 159939, 113681 ],
    "catalysts" : [ 418646 ],
    "efs" : [ ],
    "diagramIds" : [ 204 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353484,
    "stId" : "R-GGA-353484",
    "displayName" : "Uracil glycosylase mediated recognition and binding of uracil opposite guanine",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "following" : [ 353271 ],
    "inputs" : [ 110151, 353317 ],
    "outputs" : [ 353501 ],
    "catalysts" : [ 353317 ],
    "efs" : [ ],
    "diagramIds" : [ 185 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353481,
    "stId" : "R-GGA-353481",
    "displayName" : "5-methylcytosine G/T mismatch specific DNA glycosylase mediated recognition and binding of thymine opposite guanine at CpG sequences",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "following" : [ 353277 ],
    "inputs" : [ 110169, 353363 ],
    "outputs" : [ 353305 ],
    "catalysts" : [ 353405 ],
    "efs" : [ ],
    "diagramIds" : [ 186 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 351434,
    "stId" : "R-GGA-351434",
    "displayName" : "Phosphorylation of H2AX at S139 by ATM at the site of DSB",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 217204 ],
    "following" : [ 351456, 351478, 351429 ],
    "inputs" : [ 29358, 217027 ],
    "outputs" : [ 113582, 217212 ],
    "catalysts" : [ 216927 ],
    "efs" : [ ],
    "diagramIds" : [ 166 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353226,
    "stId" : "R-GGA-353226",
    "displayName" : "Association of Ku heterodimer with ends of DNA double-strand breaks",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "following" : [ 353283, 353455 ],
    "inputs" : [ 353530, 75165 ],
    "outputs" : [ 353518 ],
    "efs" : [ ],
    "diagramIds" : [ 175 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 265940,
    "stId" : "R-GGA-265940",
    "displayName" : "Rad51 assembly at the DNA-damage sites on the chromatin",
    "schemaClass" : "Polymerisation",
    "speciesId" : 0,
    "preceding" : [ 217013 ],
    "inputs" : [ 216957 ],
    "outputs" : [ 265869 ],
    "efs" : [ ],
    "activators" : [ 265944, 265880 ],
    "diagramIds" : [ 167 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353494,
    "stId" : "R-GGA-353494",
    "displayName" : "Elongation by Pol kappa",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 353318 ],
    "inputs" : [ 353449 ],
    "outputs" : [ 110310, 353233, 353413 ],
    "catalysts" : [ 353233 ],
    "efs" : [ ],
    "diagramIds" : [ 202 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 265936,
    "stId" : "R-GGA-265936",
    "displayName" : "Phosphorylation of RPA2 by CDC2 kinase",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 265887 ],
    "inputs" : [ 29358, 265807 ],
    "outputs" : [ 113582, 265827 ],
    "catalysts" : [ 265964 ],
    "efs" : [ ],
    "diagramIds" : [ 155 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353500,
    "stId" : "R-GGA-353500",
    "displayName" : "Nuclear focus formation by interaction of chSNM1A with PIAS1 upon DNA lesion",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "inputs" : [ 353342, 353365 ],
    "outputs" : [ 353369 ],
    "efs" : [ ],
    "diagramIds" : [ 210 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 351455,
    "stId" : "R-GGA-351455",
    "displayName" : "Phosphorylation of NBS1 by ATM",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "inputs" : [ 29358, 216923 ],
    "outputs" : [ 113582, 351432 ],
    "catalysts" : [ 217023 ],
    "efs" : [ ],
    "diagramIds" : [ 165 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 265951,
    "stId" : "R-GGA-265951",
    "displayName" : "Phosphorylation of FANCG at S7",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "inputs" : [ 29358, 265900 ],
    "outputs" : [ 113582, 265853 ],
    "catalysts" : [ 217140 ],
    "efs" : [ ],
    "diagramIds" : [ 226 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 265823,
    "stId" : "R-GGA-265823",
    "displayName" : "Association between RAD9 and TopBP1",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "following" : [ 265858 ],
    "inputs" : [ 265899, 217091 ],
    "outputs" : [ 265854 ],
    "efs" : [ ],
    "diagramIds" : [ 156 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353243,
    "stId" : "R-GGA-353243",
    "displayName" : "Monoubiquitunated PCNA mediates recruitment of the translesion polymerase to the DNA damaged site",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 216988 ],
    "inputs" : [ 353448, 353521, 109939 ],
    "outputs" : [ 353297, 353270 ],
    "efs" : [ ],
    "activators" : [ 217171 ],
    "diagramIds" : [ 192 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 265959,
    "stId" : "R-GGA-265959",
    "displayName" : "Phosphorylation of Chk2 by ATM upon DNA damage",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "inputs" : [ 29358, 265922 ],
    "outputs" : [ 113582, 265820 ],
    "catalysts" : [ 217023 ],
    "efs" : [ ],
    "diagramIds" : [ 160 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353504,
    "stId" : "R-GGA-353504",
    "displayName" : "Insertion of correct bases opposite to the lesion by Pol eta",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 353430 ],
    "following" : [ 353435 ],
    "inputs" : [ 353270 ],
    "outputs" : [ 353454 ],
    "catalysts" : [ 353448 ],
    "efs" : [ ],
    "diagramIds" : [ 197 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 351456,
    "stId" : "R-GGA-351456",
    "displayName" : "Association of gamma H2AX and NBS1",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 351434 ],
    "inputs" : [ 351432, 351449 ],
    "outputs" : [ 351452 ],
    "efs" : [ ],
    "diagramIds" : [ 178 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353516,
    "stId" : "R-GGA-353516",
    "displayName" : "Ligation of DNA at sites of patch replacement",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "inputs" : [ 418652 ],
    "outputs" : [ 418654 ],
    "catalysts" : [ 353366 ],
    "efs" : [ ],
    "diagramIds" : [ 189 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 216941,
    "stId" : "R-GGA-216941",
    "displayName" : "Phosphorylation of Chk1 by ATR",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 265858, 351412 ],
    "inputs" : [ 29358, 217006 ],
    "outputs" : [ 113582, 217062 ],
    "catalysts" : [ 217140 ],
    "efs" : [ ],
    "requirements" : [ 217205, 217059 ],
    "diagramIds" : [ 153 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353524,
    "stId" : "R-GGA-353524",
    "displayName" : "XP-C binds to RAD23B forming a heterodimer",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "following" : [ 353314 ],
    "inputs" : [ 353347, 353459 ],
    "outputs" : [ 353284 ],
    "efs" : [ ],
    "diagramIds" : [ 209 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353268,
    "stId" : "R-GGA-353268",
    "displayName" : "Binding of Pol zeta complex to a DNA template containing lesions",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 353434 ],
    "following" : [ 353273 ],
    "inputs" : [ 353521, 109939 ],
    "outputs" : [ 353297 ],
    "efs" : [ ],
    "diagramIds" : [ 193 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 265973,
    "stId" : "R-GGA-265973",
    "displayName" : "Monoubiquitination of FANCI",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "inputs" : [ 216946, 265829 ],
    "outputs" : [ 265834 ],
    "efs" : [ ],
    "diagramIds" : [ 223 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353271,
    "stId" : "R-GGA-353271",
    "displayName" : "Cleavage of uracil by Uracil-glycosylase",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 353484 ],
    "inputs" : [ 353501 ],
    "outputs" : [ 353483, 29554 ],
    "catalysts" : [ 353317 ],
    "efs" : [ ],
    "diagramIds" : [ 183 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353526,
    "stId" : "R-GGA-353526",
    "displayName" : "Repair of ~27-30 bp long patch by DNA Pol Epsilon",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 353476 ],
    "following" : [ 353323 ],
    "inputs" : [ 30555, 109961 ],
    "outputs" : [ 109964, 109961 ],
    "catalysts" : [ 353254 ],
    "efs" : [ ],
    "requirements" : [ 353334, 217185, 265969 ],
    "diagramIds" : [ 206 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 351478,
    "stId" : "R-GGA-351478",
    "displayName" : "Association of gamma-H2AX with MCPH1",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 351434 ],
    "inputs" : [ 217212, 351476 ],
    "outputs" : [ 351467 ],
    "efs" : [ ],
    "diagramIds" : [ 179 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 265968,
    "stId" : "R-GGA-265968",
    "displayName" : "Association of RAD51 with BRCA1",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 265987 ],
    "inputs" : [ 265944, 216997 ],
    "outputs" : [ 265909 ],
    "efs" : [ ],
    "requirements" : [ 265794 ],
    "diagramIds" : [ 168 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353265,
    "stId" : "R-GGA-353265",
    "displayName" : "Interaction between two DNA-PK:DNA complexes at opposing ends of DNA DSB",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 353283 ],
    "following" : [ 353313 ],
    "inputs" : [ 353384 ],
    "outputs" : [ 353424 ],
    "efs" : [ ],
    "diagramIds" : [ 173 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 217204,
    "stId" : "R-GGA-217204",
    "displayName" : "Activation and association of ATM kinase at the DNA damage sites",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 217209 ],
    "following" : [ 351434 ],
    "inputs" : [ 351411 ],
    "outputs" : [ 217182 ],
    "efs" : [ ],
    "requirements" : [ 217021, 216923 ],
    "diagramIds" : [ 159 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353277,
    "stId" : "R-GGA-353277",
    "displayName" : "Cleavage of thymine by 5-methylcytosine G/T mismatch specific glycosylase",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 353481 ],
    "inputs" : [ 353305 ],
    "outputs" : [ 29692, 353249 ],
    "catalysts" : [ 353405 ],
    "efs" : [ ],
    "diagramIds" : [ 188 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 217209,
    "stId" : "R-GGA-217209",
    "displayName" : "Generation of a DNA double strand break",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "following" : [ 265887, 217204, 351412 ],
    "inputs" : [ 29428 ],
    "outputs" : [ 75155 ],
    "efs" : [ ],
    "diagramIds" : [ 158 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 353273,
    "stId" : "R-GGA-353273",
    "displayName" : "Elongation by Pol zeta complex",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 353268 ],
    "inputs" : [ 30555, 353297 ],
    "outputs" : [ 110310, 353521 ],
    "catalysts" : [ 353521 ],
    "efs" : [ ],
    "diagramIds" : [ 194 ],
    "entityFunctionalStatus" : [ ]
  } ],
  "subpathways" : [ {
    "dbId" : 353423,
    "stId" : "R-GGA-353423",
    "displayName" : "Non-homologous end joining (NHEJ)",
    "events" : [ 353265, 353313, 353283, 353475, 353298, 353455, 353226 ]
  }, {
    "dbId" : 353488,
    "stId" : "R-GGA-353488",
    "displayName" : "DNA damage bypass",
    "events" : [ 353243, 216988, 353430, 353504, 353435, 353268, 353273, 353434, 353301, 353460, 353318, 353494 ]
  }, {
    "dbId" : 353503,
    "stId" : "R-GGA-353503",
    "displayName" : "Translesion synthesis by Pol kappa",
    "events" : [ 353301, 353460, 353318, 353494 ]
  }, {
    "dbId" : 351465,
    "stId" : "R-GGA-351465",
    "displayName" : "Fanconi Anemia Pathway in DNA repair",
    "events" : [ 265973, 265894, 217017, 265951, 217150 ]
  }, {
    "dbId" : 353371,
    "stId" : "R-GGA-353371",
    "displayName" : "Double strand break repair",
    "events" : [ 351429, 351412, 351478, 351456, 351407, 217152, 217204, 217209, 265940, 217136, 265959, 217013, 265987, 217147, 351455, 351434, 265887, 265867, 265862, 265968, 265936, 265936, 265858, 217097, 265823, 216941, 265867, 353265, 353313, 353283, 353475, 353298, 353455, 353226 ]
  }, {
    "dbId" : 351444,
    "stId" : "R-GGA-351444",
    "displayName" : "Recruitment of repair and signaling proteins to double-strand breaks",
    "events" : [ 351429, 351412, 351478, 351456, 351407 ]
  }, {
    "dbId" : 353496,
    "stId" : "R-GGA-353496",
    "displayName" : "Translesion synthesis by DNA polymerases bypassing lesion on DNA template",
    "events" : [ 353430, 353504, 353435, 353268, 353273, 353434, 353301, 353460, 353318, 353494 ]
  }, {
    "dbId" : 353248,
    "stId" : "R-GGA-353248",
    "displayName" : "DNA damage recognition in global genomic repair",
    "events" : [ 353524, 353314, 353500 ]
  }, {
    "dbId" : 353357,
    "stId" : "R-GGA-353357",
    "displayName" : "Base Excision Repair",
    "events" : [ 353444, 353271, 353426, 353277, 353484, 353481, 353472, 353516 ]
  }, {
    "dbId" : 353416,
    "stId" : "R-GGA-353416",
    "displayName" : "Resolution of Abasic Sites (AP sites)",
    "events" : [ 353472, 353516 ]
  }, {
    "dbId" : 351433,
    "stId" : "R-GGA-351433",
    "displayName" : "ATM mediated phosphorylation of repair proteins",
    "events" : [ 265940, 217136, 265959, 217013, 265987, 217147, 351455, 351434 ]
  }, {
    "dbId" : 217106,
    "stId" : "R-GGA-217106",
    "displayName" : "Chk1-controlled and DNA-damage induced centrosome duplication",
    "events" : [ 351412, 217136, 217204, 217209, 216941 ]
  }, {
    "dbId" : 353382,
    "stId" : "R-GGA-353382",
    "displayName" : "Translesion synthesis by Pol eta",
    "events" : [ 353430, 353504, 353435 ]
  }, {
    "dbId" : 353299,
    "stId" : "R-GGA-353299",
    "displayName" : "RAD18 and ubiquitinated PCNA-mediated recruitment of translesion polymerases",
    "events" : [ 353243, 216988 ]
  }, {
    "dbId" : 353473,
    "stId" : "R-GGA-353473",
    "displayName" : "Translesion synthesis by Pol zeta",
    "events" : [ 353268, 353273, 353434 ]
  }, {
    "dbId" : 353303,
    "stId" : "R-GGA-353303",
    "displayName" : "Nucleotide Excision Repair",
    "events" : [ 353476, 353526, 353524, 353314, 353500, 353323 ]
  }, {
    "dbId" : 353239,
    "stId" : "R-GGA-353239",
    "displayName" : "DNA Damage Reversal",
    "events" : [ 353300, 353356 ]
  }, {
    "dbId" : 351442,
    "stId" : "R-GGA-351442",
    "displayName" : "ATM mediated response to DNA double-strand break",
    "events" : [ 217204, 217209, 265940, 217136, 265959, 217013, 265987, 217147, 351455, 351434 ]
  }, {
    "dbId" : 351468,
    "stId" : "R-GGA-351468",
    "displayName" : "Processing of DNA double-strand break ends",
    "events" : [ 265887, 265867 ]
  }, {
    "dbId" : 265976,
    "stId" : "R-GGA-265976",
    "displayName" : "Homologous DNA pairing and strand exchange",
    "events" : [ 265862, 265968, 265936 ]
  }, {
    "dbId" : 351470,
    "stId" : "R-GGA-351470",
    "displayName" : "Homologous recombination repair (HRR) of replication-independent double-strand breaks",
    "events" : [ 351429, 351412, 351478, 351456, 351407, 217152, 217204, 217209, 265940, 217136, 265959, 217013, 265987, 217147, 351455, 351434, 265887, 265867, 265862, 265968, 265936 ]
  }, {
    "dbId" : 353234,
    "stId" : "R-GGA-353234",
    "displayName" : "Base Excision Repair, AP site formation by depyrimidination",
    "events" : [ 353444, 353271, 353426, 353277, 353484, 353481 ]
  }, {
    "dbId" : 351451,
    "stId" : "R-GGA-351451",
    "displayName" : "Homologous recombination repair of replication-dependent double-strand breaks",
    "events" : [ 265936, 265858, 217097, 265823, 216941, 265867 ]
  }, {
    "dbId" : 353295,
    "stId" : "R-GGA-353295",
    "displayName" : "Homologous recombination repair",
    "events" : [ 351429, 351412, 351478, 351456, 351407, 217152, 217204, 217209, 265940, 217136, 265959, 217013, 265987, 217147, 351455, 351434, 265887, 265867, 265862, 265968, 265936, 265936, 265858, 217097, 265823, 216941, 265867 ]
  } ]
}