{
  "dbId" : 11128104,
  "stId" : "R-PFA-73857",
  "speciesName" : "Plasmodium falciparum",
  "nodes" : [ {
    "dbId" : 11109800,
    "stId" : "R-PFA-83713",
    "displayName" : "POLR2E [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "identifier" : "Q8ID59",
    "standardIdentifier" : "uniprot:Q8ID59",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11111480, 11109812, 11110915 ],
    "children" : [ ]
  }, {
    "dbId" : 11110955,
    "stId" : "R-PFA-65916",
    "displayName" : "GTF2H3 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "identifier" : "Q8IDG5",
    "standardIdentifier" : "uniprot:Q8IDG5",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11110974 ],
    "children" : [ ]
  }, {
    "dbId" : 11109805,
    "stId" : "R-PFA-83714",
    "displayName" : "POLR2F [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "identifier" : "O77315",
    "standardIdentifier" : "uniprot:O77315",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11111480, 11109812, 11110915 ],
    "children" : [ ]
  }, {
    "dbId" : 113541,
    "stId" : "R-ALL-113541",
    "displayName" : "PPi [nucleoplasm]",
    "schemaClass" : "SimpleEntity",
    "speciesId" : 0,
    "diagramIds" : [ 49700, 49695 ],
    "identifier" : "33019",
    "standardIdentifier" : "chebi:33019",
    "chebiIdentifier" : "chebi:33019",
    "referenceType" : "ReferenceMolecule",
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 11110945,
    "stId" : "R-PFA-67443",
    "displayName" : "ERCC2 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "identifier" : "Q8I2H7",
    "standardIdentifier" : "uniprot:Q8I2H7",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11110974 ],
    "children" : [ ]
  }, {
    "dbId" : 11109795,
    "stId" : "R-PFA-63537",
    "displayName" : "POLR2K [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "identifier" : "Q8IDR2",
    "standardIdentifier" : "uniprot:Q8IDR2",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11111480, 11109812, 11110915 ],
    "children" : [ ]
  }, {
    "dbId" : 11128102,
    "stId" : "R-PFA-212436",
    "displayName" : "Generic Transcription Pathway",
    "schemaClass" : "Pathway",
    "speciesId" : 170928,
    "diagramIds" : [ 49757 ]
  }, {
    "dbId" : 11110950,
    "stId" : "R-PFA-67439",
    "displayName" : "ERCC3 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "identifier" : "Q8IJ31",
    "standardIdentifier" : "uniprot:Q8IJ31",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11110974 ],
    "children" : [ ]
  }, {
    "dbId" : 11111480,
    "stId" : "R-PFA-113427",
    "displayName" : "RNA Polymerase II holoenzyme complex (hypophosphorylated):TFIIF complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 170928,
    "parents" : [ 11111487 ],
    "children" : [ 11109780, 11109810, 11109790, 11109818, 11109755, 11109785, 11109765, 11109795, 11109760, 11109775, 11109805, 11109770, 11109800 ]
  }, {
    "dbId" : 11109816,
    "stId" : "R-PFA-65567",
    "displayName" : "Ghost homologue of GTF2F2 [nucleoplasm]",
    "schemaClass" : "GenomeEncodedEntity",
    "speciesId" : 170928,
    "parents" : [ 11109818 ],
    "children" : [ ]
  }, {
    "dbId" : 11109818,
    "stId" : "R-PFA-109631",
    "displayName" : "TFIIF [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 170928,
    "parents" : [ 11111480, 11109820, 11110917 ],
    "children" : [ 11109814, 11109816 ]
  }, {
    "dbId" : 72085,
    "stId" : "R-ALL-72085",
    "displayName" : "capped pre-mRNA [nucleoplasm]",
    "schemaClass" : "OtherEntity",
    "speciesId" : 0,
    "parents" : [ 11111487, 11109822 ],
    "children" : [ ]
  }, {
    "dbId" : 11111485,
    "stId" : "R-PFA-113416",
    "displayName" : "CTDP1 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "diagramIds" : [ 49715 ],
    "identifier" : "Q8IJR8",
    "standardIdentifier" : "uniprot:Q8IJR8",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11111487 ],
    "children" : [ ]
  }, {
    "dbId" : 11110972,
    "stId" : "R-PFA-5688446",
    "displayName" : "GTF2H5 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "identifier" : "Q8IL51",
    "standardIdentifier" : "uniprot:Q8IL51",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11110974 ],
    "children" : [ ]
  }, {
    "dbId" : 11109820,
    "stId" : "R-PFA-113404",
    "displayName" : "RNA polymerase II (phosphorylated):TFIIF complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 170928,
    "parents" : [ 11111037, 11111031, 11111053, 11109822 ],
    "children" : [ 11109812, 11109818 ]
  }, {
    "dbId" : 11111487,
    "stId" : "R-PFA-113715",
    "displayName" : "RNA Pol II (hypophosphorylated):capped pre-mRNA complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 170928,
    "diagramIds" : [ 49718 ],
    "parents" : [ 11111489 ],
    "children" : [ 11111485, 72085, 11111480, 11109737 ]
  }, {
    "dbId" : 11110974,
    "stId" : "R-PFA-109634",
    "displayName" : "TFIIH [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 170928,
    "diagramIds" : [ 49717 ],
    "parents" : [ 11111002, 11111004, 11111035, 11111037, 11111031, 11111053 ],
    "children" : [ 11110950, 11110967, 11110965, 11110960, 11110945, 11110972, 11110940, 11110955 ]
  }, {
    "dbId" : 11109822,
    "stId" : "R-PFA-113405",
    "displayName" : "RNA Polymerase II (phosphorylated):TFIIF:capped pre-mRNA [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 170928,
    "parents" : [ 11109824 ],
    "children" : [ 11109820, 72085 ]
  }, {
    "dbId" : 11110960,
    "stId" : "R-PFA-65914",
    "displayName" : "GTF2H2 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "identifier" : "Q8IEG6",
    "standardIdentifier" : "uniprot:Q8IEG6",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11110974 ],
    "children" : [ ]
  }, {
    "dbId" : 11109810,
    "stId" : "R-PFA-83715",
    "displayName" : "POLR2L [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "identifier" : "Q8IC08",
    "standardIdentifier" : "uniprot:Q8IC08",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11111480, 11109812, 11110915 ],
    "children" : [ ]
  }, {
    "dbId" : 11110965,
    "stId" : "R-PFA-65918",
    "displayName" : "GTF2H4 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "identifier" : "Q8I4Y8",
    "standardIdentifier" : "uniprot:Q8I4Y8",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11110974 ],
    "children" : [ ]
  }, {
    "dbId" : 11111476,
    "stId" : "R-PFA-64905",
    "displayName" : "SUPT4H1 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "diagramIds" : [ 49723 ],
    "identifier" : "Q8IJA5",
    "standardIdentifier" : "uniprot:Q8IJA5",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11111478 ],
    "children" : [ ]
  }, {
    "dbId" : 11109812,
    "stId" : "R-PFA-113716",
    "displayName" : "RNA Polymerase II holoenzyme complex (phosphorylated) [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 170928,
    "parents" : [ 11109820 ],
    "children" : [ 11109780, 11109765, 11109810, 11109795, 11109760, 11109790, 11109775, 11109805, 11109770, 11109755, 11109800, 11109785 ]
  }, {
    "dbId" : 111260,
    "stId" : "R-ALL-111260",
    "displayName" : "template DNA:30 nt transcript hybrid [nucleoplasm]",
    "schemaClass" : "OtherEntity",
    "speciesId" : 0,
    "parents" : [ 11111035, 11111053, 11111031, 11111037 ],
    "children" : [ ]
  }, {
    "dbId" : 11110967,
    "stId" : "R-PFA-65912",
    "displayName" : "Ghost homologue of GTF2H1 [nucleoplasm]",
    "schemaClass" : "GenomeEncodedEntity",
    "speciesId" : 170928,
    "parents" : [ 11110974 ],
    "children" : [ ]
  }, {
    "dbId" : 11109814,
    "stId" : "R-PFA-65565",
    "displayName" : "Ghost homologue of GTF2F1 [nucleoplasm]",
    "schemaClass" : "GenomeEncodedEntity",
    "speciesId" : 170928,
    "parents" : [ 11109818 ],
    "children" : [ ]
  }, {
    "dbId" : 11111478,
    "stId" : "R-PFA-112420",
    "displayName" : "DSIF complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 170928,
    "diagramIds" : [ 49720 ],
    "parents" : [ 11111489 ],
    "children" : [ 11111476, 11111051 ]
  }, {
    "dbId" : 11111051,
    "stId" : "R-PFA-3009372",
    "displayName" : "phospho-p-SUPT5H [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "diagramIds" : [ 49710 ],
    "identifier" : "C6KSV4",
    "standardIdentifier" : "uniprot:C6KSV4",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11111478, 11111053 ],
    "children" : [ ]
  }, {
    "dbId" : 11109770,
    "stId" : "R-PFA-63504",
    "displayName" : "POLR2B [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "identifier" : "O96236",
    "standardIdentifier" : "uniprot:O96236",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11111480, 11109812, 11110915 ],
    "children" : [ ]
  }, {
    "dbId" : 11111053,
    "stId" : "R-PFA-77061",
    "displayName" : "CE:Pol II CTD:Spt5 complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 170928,
    "diagramIds" : [ 49713 ],
    "parents" : [ ],
    "children" : [ 111260, 11111045, 11111029, 11110974, 11109820, 11111051 ]
  }, {
    "dbId" : 11109775,
    "stId" : "R-PFA-63508",
    "displayName" : "POLR2D [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "identifier" : "O96150",
    "standardIdentifier" : "uniprot:O96150",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11111480, 11109812, 11110915 ],
    "children" : [ ]
  }, {
    "dbId" : 11110913,
    "stId" : "R-PFA-63502",
    "displayName" : "POLR2A [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "identifier" : "O77375",
    "standardIdentifier" : "uniprot:O77375",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11110915 ],
    "children" : [ ]
  }, {
    "dbId" : 11109760,
    "stId" : "R-PFA-63531",
    "displayName" : "POLR2J [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "identifier" : "Q8IER7",
    "standardIdentifier" : "uniprot:Q8IER7",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11111480, 11109812, 11110915 ],
    "children" : [ ]
  }, {
    "dbId" : 11110915,
    "stId" : "R-PFA-113401",
    "displayName" : "RNA Polymerase II holoenzyme complex (unphosphorylated) [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 170928,
    "parents" : [ 11110917 ],
    "children" : [ 11109780, 11109765, 11109810, 11109795, 11109760, 11110913, 11109790, 11109775, 11109805, 11109770, 11109800, 11109785 ]
  }, {
    "dbId" : 11109765,
    "stId" : "R-PFA-63525",
    "displayName" : "POLR2I [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "identifier" : "Q8I241",
    "standardIdentifier" : "uniprot:Q8I241",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11111480, 11109812, 11110915 ],
    "children" : [ ]
  }, {
    "dbId" : 11110917,
    "stId" : "R-PFA-71307",
    "displayName" : "RNA Polymerase II (unphosphorylated):TFIIF complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 170928,
    "diagramIds" : [ 49696 ],
    "parents" : [ 11111002, 11111004, 11111035 ],
    "children" : [ 11110915, 11109818 ]
  }, {
    "dbId" : 11111045,
    "stId" : "R-PFA-77060",
    "displayName" : "RNMT [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "diagramIds" : [ 49712 ],
    "identifier" : "Q8IC20",
    "standardIdentifier" : "uniprot:Q8IC20",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11111053 ],
    "children" : [ ]
  }, {
    "dbId" : 29358,
    "stId" : "R-ALL-29358",
    "displayName" : "ATP [nucleoplasm]",
    "schemaClass" : "SimpleEntity",
    "speciesId" : 0,
    "diagramIds" : [ 49704 ],
    "identifier" : "30616",
    "standardIdentifier" : "chebi:30616",
    "referenceType" : "ReferenceMolecule",
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 113582,
    "stId" : "R-ALL-113582",
    "displayName" : "ADP [nucleoplasm]",
    "schemaClass" : "SimpleEntity",
    "speciesId" : 0,
    "diagramIds" : [ 49706 ],
    "identifier" : "456216",
    "standardIdentifier" : "chebi:456216",
    "referenceType" : "ReferenceMolecule",
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 11109785,
    "stId" : "R-PFA-63506",
    "displayName" : "POLR2C [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "identifier" : "Q8I2S6",
    "standardIdentifier" : "uniprot:Q8I2S6",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11111480, 11109812, 11110915 ],
    "children" : [ ]
  }, {
    "dbId" : 11110938,
    "stId" : "R-PFA-59012",
    "displayName" : "MNAT1 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "identifier" : "Q8I3Y3",
    "standardIdentifier" : "uniprot:Q8I3Y3",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11110940 ],
    "children" : [ ]
  }, {
    "dbId" : 11110940,
    "stId" : "R-PFA-69221",
    "displayName" : "CAK [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 170928,
    "parents" : [ 11110974 ],
    "children" : [ 11110933, 11110928, 11110938 ]
  }, {
    "dbId" : 11109790,
    "stId" : "R-PFA-63523",
    "displayName" : "POLR2H [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "identifier" : "Q8I5R8",
    "standardIdentifier" : "uniprot:Q8I5R8",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11111480, 11109812, 11110915 ],
    "children" : [ ]
  }, {
    "dbId" : 11110928,
    "stId" : "R-PFA-69218",
    "displayName" : "Ghost homologue of CDK7 [nucleoplasm]",
    "schemaClass" : "GenomeEncodedEntity",
    "speciesId" : 170928,
    "parents" : [ 11110940 ],
    "children" : [ ]
  }, {
    "dbId" : 11110933,
    "stId" : "R-PFA-69220",
    "displayName" : "CCNH [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "identifier" : "Q8IKK0",
    "standardIdentifier" : "uniprot:Q8IKK0",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11110940 ],
    "children" : [ ]
  }, {
    "dbId" : 11109780,
    "stId" : "R-PFA-63517",
    "displayName" : "POLR2G [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "identifier" : "Q8IJC9",
    "standardIdentifier" : "uniprot:Q8IJC9",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11111480, 11109812, 11110915 ],
    "children" : [ ]
  }, {
    "dbId" : 11109737,
    "stId" : "R-PFA-77088",
    "displayName" : "Cap Binding Complex (CBC) [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 170928,
    "parents" : [ 11111487, 11109824 ],
    "children" : [ 11109735, 11109733 ]
  }, {
    "dbId" : 11111520,
    "stId" : "R-PFA-112415",
    "displayName" : "SUPT16H [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "diagramIds" : [ 49726 ],
    "identifier" : "Q8I3T4",
    "standardIdentifier" : "uniprot:Q8I3T4",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11111522 ],
    "children" : [ ]
  }, {
    "dbId" : 11111522,
    "stId" : "R-PFA-112417",
    "displayName" : "FACT complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 170928,
    "diagramIds" : [ 49727 ],
    "parents" : [ ],
    "children" : [ 11111520, 11111515 ]
  }, {
    "dbId" : 11109733,
    "stId" : "R-PFA-51463",
    "displayName" : "NCBP2 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "identifier" : "Q8I1T2",
    "standardIdentifier" : "uniprot:Q8I1T2",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11109737 ],
    "children" : [ ]
  }, {
    "dbId" : 11109735,
    "stId" : "R-PFA-51469",
    "displayName" : "Ghost homologue of NCBP1 [nucleoplasm]",
    "schemaClass" : "GenomeEncodedEntity",
    "speciesId" : 170928,
    "parents" : [ 11109737 ],
    "children" : [ ]
  }, {
    "dbId" : 11109755,
    "stId" : "R-PFA-77100",
    "displayName" : "phospho-p-S5(CTD)-POLR2A [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "identifier" : "O77375",
    "standardIdentifier" : "uniprot:O77375",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11111480, 11109812 ],
    "children" : [ ]
  }, {
    "dbId" : 11111035,
    "stId" : "R-PFA-157171",
    "displayName" : "Pol II transcription complex containing extruded transcript to +30 [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 170928,
    "diagramIds" : [ 49699, 49702 ],
    "parents" : [ ],
    "children" : [ 111260, 11110917, 11110974 ]
  }, {
    "dbId" : 11111037,
    "stId" : "R-PFA-157174",
    "displayName" : "Pol II transcription complex with (ser5) phosphorylated CTD containing extruded transcript to +30 [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 170928,
    "diagramIds" : [ 49705 ],
    "parents" : [ ],
    "children" : [ 111260, 11110974, 11109820 ]
  }, {
    "dbId" : 9757634,
    "stId" : "R-ALL-9757634",
    "displayName" : "NTP [nucleoplasm]",
    "schemaClass" : "SimpleEntity",
    "speciesId" : 0,
    "diagramIds" : [ 49698, 49693 ],
    "identifier" : "61557",
    "standardIdentifier" : "chebi:61557",
    "referenceType" : "ReferenceMolecule",
    "parents" : [ ],
    "children" : [ ]
  }, {
    "dbId" : 11111029,
    "stId" : "R-PFA-72081",
    "displayName" : "Ghost homologue of RNGTT [nucleoplasm]",
    "schemaClass" : "GenomeEncodedEntity",
    "speciesId" : 170928,
    "parents" : [ 11111031, 11111053 ],
    "children" : [ ]
  }, {
    "dbId" : 11111031,
    "stId" : "R-PFA-77053",
    "displayName" : "RNA Pol II with phosphorylated CTD: CE complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 170928,
    "diagramIds" : [ 49708, 49711 ],
    "parents" : [ ],
    "children" : [ 111260, 11111029, 11110974, 11109820 ]
  }, {
    "dbId" : 11111498,
    "stId" : "R-PFA-112428",
    "displayName" : "NELFCD [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "identifier" : "Q9U0K9",
    "standardIdentifier" : "uniprot:Q9U0K9",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11111505 ],
    "children" : [ ]
  }, {
    "dbId" : 11111503,
    "stId" : "R-PFA-62907",
    "displayName" : "NELFE [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "identifier" : "C6KSQ9",
    "standardIdentifier" : "uniprot:C6KSQ9",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11111505 ],
    "children" : [ ]
  }, {
    "dbId" : 11111489,
    "stId" : "R-PFA-113406",
    "displayName" : "RNA Pol II (hypophosphorylated) complex bound to DSIF protein [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 170928,
    "diagramIds" : [ 49721 ],
    "parents" : [ 11111507 ],
    "children" : [ 11111478, 11111487 ]
  }, {
    "dbId" : 11109824,
    "stId" : "R-PFA-77089",
    "displayName" : "capped pre-mRNA:CBC:RNA Pol II (phosphorylated) complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 170928,
    "diagramIds" : [ 49716 ],
    "parents" : [ ],
    "children" : [ 11109822, 11109737 ]
  }, {
    "dbId" : 11111491,
    "stId" : "R-PFA-112426",
    "displayName" : "Ghost homologue of NELFA [nucleoplasm]",
    "schemaClass" : "GenomeEncodedEntity",
    "speciesId" : 170928,
    "parents" : [ 11111505 ],
    "children" : [ ]
  }, {
    "dbId" : 11111493,
    "stId" : "R-PFA-112427",
    "displayName" : "Ghost homologue of NELFB [nucleoplasm]",
    "schemaClass" : "GenomeEncodedEntity",
    "speciesId" : 170928,
    "parents" : [ 11111505 ],
    "children" : [ ]
  }, {
    "dbId" : 75888,
    "stId" : "R-ALL-75888",
    "displayName" : "template DNA:9 nucleotide transcript hybrid [nucleoplasm]",
    "schemaClass" : "OtherEntity",
    "speciesId" : 0,
    "parents" : [ 11111002 ],
    "children" : [ ]
  }, {
    "dbId" : 11111515,
    "stId" : "R-PFA-65105",
    "displayName" : "SSRP1 [nucleoplasm]",
    "schemaClass" : "EntityWithAccessionedSequence",
    "speciesId" : 170928,
    "diagramIds" : [ 49725 ],
    "identifier" : "Q8IL56",
    "standardIdentifier" : "uniprot:Q8IL56",
    "referenceType" : "ReferenceGeneProduct",
    "parents" : [ 11111522 ],
    "children" : [ ]
  }, {
    "dbId" : 11111002,
    "stId" : "R-PFA-75882",
    "displayName" : "pol II transcription complex containing 9 nucleotide long transcript [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 170928,
    "diagramIds" : [ 49692 ],
    "parents" : [ ],
    "children" : [ 11110917, 11110974, 75888 ]
  }, {
    "dbId" : 11111004,
    "stId" : "R-PFA-75902",
    "displayName" : "pol II transcription complex containing 11 nucleotide long transcript [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 170928,
    "diagramIds" : [ 49694 ],
    "parents" : [ ],
    "children" : [ 11110917, 75901, 11110974 ]
  }, {
    "dbId" : 11111505,
    "stId" : "R-PFA-112432",
    "displayName" : "NELF complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 170928,
    "parents" : [ 11111507 ],
    "children" : [ 11111493, 11111491, 11111503, 11111498 ]
  }, {
    "dbId" : 11111507,
    "stId" : "R-PFA-113408",
    "displayName" : "DSIF:NELF:early elongation complex [nucleoplasm]",
    "schemaClass" : "Complex",
    "speciesId" : 170928,
    "diagramIds" : [ 49729 ],
    "parents" : [ ],
    "children" : [ 11111505, 11111489 ]
  }, {
    "dbId" : 75901,
    "stId" : "R-ALL-75901",
    "displayName" : "template DNA:11 nucleotide transcript hybrid [nucleoplasm]",
    "schemaClass" : "OtherEntity",
    "speciesId" : 0,
    "parents" : [ 11111004 ],
    "children" : [ ]
  } ],
  "edges" : [ {
    "dbId" : 11111033,
    "stId" : "R-PFA-77068",
    "displayName" : "Activation of GT",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "following" : [ 11111055 ],
    "inputs" : [ 11111031 ],
    "outputs" : [ 11111031 ],
    "efs" : [ ],
    "diagramIds" : [ 49707 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 11111528,
    "stId" : "R-PFA-113407",
    "displayName" : "DSIF complex binds to RNA Pol II (hypophosphorylated)",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 11111526, 11111510 ],
    "inputs" : [ 11111478, 11111487 ],
    "outputs" : [ 11111489 ],
    "efs" : [ ],
    "diagramIds" : [ 49719 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 11111530,
    "stId" : "R-PFA-113409",
    "displayName" : "Abortive termination of early transcription elongation by DSIF:NELF",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "inputs" : [ 11111507 ],
    "outputs" : [ 11111507 ],
    "efs" : [ ],
    "diagramIds" : [ 49728 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 11111386,
    "stId" : "R-PFA-111264",
    "displayName" : "Addition of nucleotides between position +11 and +30",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 11111007 ],
    "following" : [ 11111532 ],
    "inputs" : [ 9757634, 11111004 ],
    "outputs" : [ 113541, 11111035 ],
    "catalysts" : [ 11110917 ],
    "efs" : [ ],
    "diagramIds" : [ 49697 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 11111532,
    "stId" : "R-PFA-113430",
    "displayName" : "Extrusion of 5'-end of 30 nt long transcript through the pore in Pol II complex",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 11111386 ],
    "following" : [ 11111040 ],
    "inputs" : [ 11111035 ],
    "outputs" : [ 11111035 ],
    "efs" : [ ],
    "diagramIds" : [ 49701 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 11111007,
    "stId" : "R-PFA-76576",
    "displayName" : "Addition of nucleotides 10 and 11 on the growing transcript: Third Transition",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "following" : [ 11111386 ],
    "inputs" : [ 9757634, 11111002 ],
    "outputs" : [ 11111004, 113541 ],
    "catalysts" : [ 11110917 ],
    "efs" : [ ],
    "diagramIds" : [ 49691 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 11111055,
    "stId" : "R-PFA-77073",
    "displayName" : "SPT5 subunit of Pol II binds the RNA triphosphatase (RTP)",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 11111033 ],
    "inputs" : [ 11111031, 11111045, 11111051 ],
    "outputs" : [ 11111053 ],
    "efs" : [ ],
    "diagramIds" : [ 49709 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 11111040,
    "stId" : "R-PFA-77071",
    "displayName" : "Phosphorylation (Ser5) of RNA pol II CTD",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "preceding" : [ 11111532 ],
    "inputs" : [ 29358, 11111035 ],
    "outputs" : [ 113582, 11111037 ],
    "catalysts" : [ 11111035 ],
    "efs" : [ ],
    "diagramIds" : [ 49703 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 11111524,
    "stId" : "R-PFA-112429",
    "displayName" : "Formation of FACT complex",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "inputs" : [ 11111520, 11111515 ],
    "outputs" : [ 11111522 ],
    "efs" : [ ],
    "diagramIds" : [ 49724 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 11111510,
    "stId" : "R-PFA-112383",
    "displayName" : "Hypophosphorylation of RNA Pol II CTD by FCP1P protein",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "following" : [ 11111528 ],
    "inputs" : [ 11109824, 11110974, 11111485 ],
    "outputs" : [ 11110974, 11111487 ],
    "catalysts" : [ 11111485 ],
    "efs" : [ ],
    "diagramIds" : [ 49714 ],
    "entityFunctionalStatus" : [ ]
  }, {
    "dbId" : 11111526,
    "stId" : "R-PFA-112434",
    "displayName" : "Formation of DSIF complex ",
    "schemaClass" : "Reaction",
    "speciesId" : 0,
    "following" : [ 11111528 ],
    "inputs" : [ 11111476, 11111051 ],
    "outputs" : [ 11111478 ],
    "efs" : [ ],
    "diagramIds" : [ 49722 ],
    "entityFunctionalStatus" : [ ]
  } ],
  "subpathways" : [ {
    "dbId" : 11128362,
    "stId" : "R-PFA-75955",
    "displayName" : "RNA Polymerase II Transcription Elongation",
    "events" : [ 11111528, 11111510 ]
  }, {
    "dbId" : 11128360,
    "stId" : "R-PFA-113418",
    "displayName" : "Formation of the Early Elongation Complex",
    "events" : [ 11111528, 11111510 ]
  }, {
    "dbId" : 11128242,
    "stId" : "R-PFA-76042",
    "displayName" : "RNA Polymerase II Transcription Initiation And Promoter Clearance",
    "events" : [ 11111386, 11111007 ]
  }, {
    "dbId" : 11128364,
    "stId" : "R-PFA-674695",
    "displayName" : "RNA Polymerase II Pre-transcription Events",
    "events" : [ 11111530, 11111524, 11111526 ]
  }, {
    "dbId" : 11128240,
    "stId" : "R-PFA-73776",
    "displayName" : "RNA Polymerase II Promoter Escape",
    "events" : [ 11111386, 11111007 ]
  }, {
    "dbId" : 11128246,
    "stId" : "R-PFA-77075",
    "displayName" : "RNA Pol II CTD phosphorylation and interaction with CE",
    "events" : [ 11111033, 11111532, 11111055, 11111040 ]
  } ]
}