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upf1 [cytosol]
Stable Identifier
R-XTR-927734
Type
Protein [EntityWithAccessionedSequence]
Species
Xenopus tropicalis
Compartment
cytosol
Synonyms
UPF1, A0A6I8T1P3
Locations in the PathwayBrowser
Expand all
Metabolism of RNA (Xenopus tropicalis)
Nonsense-Mediated Decay (NMD) (Xenopus tropicalis)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) (Xenopus tropicalis)
Decay of mRNA in SMG6:SMG5:SMG7:mRNA complex (Xenopus tropicalis)
upf1 [cytosol] (Xenopus tropicalis)
SMG1 phosphorylates UPF1 (enhanced by Exon Junction Complex) (Xenopus tropicalis)
SMG1:UPF1:EJC:Translated mRNP [cytosol] (Xenopus tropicalis)
upf1 [cytosol] (Xenopus tropicalis)
UPF1 binds an mRNP with a termination codon preceding an Exon Junction Complex (Xenopus tropicalis)
SMG1:UPF1:EJC:Translated mRNP [cytosol] (Xenopus tropicalis)
upf1 [cytosol] (Xenopus tropicalis)
upf1 [cytosol] (Xenopus tropicalis)
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) (Xenopus tropicalis)
Formation of UPF1:eRF3 complex on mRNA with a premature termination codon and no Exon Junction Complex (Xenopus tropicalis)
UPF1:eRF3 Complex on Translated mRNA [cytosol] (Xenopus tropicalis)
upf1 [cytosol] (Xenopus tropicalis)
upf1 [cytosol] (Xenopus tropicalis)
External Reference Information
External Reference
UniProt:A0A6I8T1P3
Gene Names
upf1
Reference Genes
BioGPS Gene:100135270 upf1
ENSEMBL:ENSXETG00000013602
KEGG:xtr:100135270 upf1
Monarch:100135270 upf1
NCBI Gene:100135270 upf1
UCSC:A0A6I8T1P3 upf1
Reference Transcript
RefSeq:XM_002938826.5 upf1
Other Identifiers
100135270
GO:0000166
GO:0000184
GO:0003677
GO:0003723
GO:0003724
GO:0003824
GO:0004386
GO:0005524
GO:0005737
GO:0008270
GO:0010468
GO:0016787
GO:0036464
GO:0043226
GO:0046872
GO:0140098
GO:0140657
GO:1903313
Participates
as an output of
Decay of mRNA in SMG6:SMG5:SMG7:mRNA complex (Xenopus tropicalis)
as an input of
UPF1 binds an mRNP with a termination codon preceding an Exon Junction Complex (Xenopus tropicalis)
Formation of UPF1:eRF3 complex on mRNA with a premature termination codon and no Exon Junction Complex (Xenopus tropicalis)
as a component of
SMG1:UPF1:EJC:Translated mRNP [cytosol] (Xenopus tropicalis)
UPF1:eRF3 Complex on Translated mRNA [cytosol] (Xenopus tropicalis)
Other forms of this molecule
phospho-upf1 [cytosol]
Inferred From
UPF1 [cytosol]
(Homo sapiens)
Cross References
RefSeq
XP_002938872.2
ENSEMBL
ENSXETP00000101161
,
ENSXETG00000013602
,
ENSXETT00000069946
Xenbase
XB-GENE-6258022
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