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prpf40a [nucleoplasm]
Stable Identifier
R-XTR-8867890
Type
Protein [EntityWithAccessionedSequence]
Species
Xenopus tropicalis
Compartment
nucleoplasm
Synonyms
PRPF40A, A0A8J0QGJ3
Locations in the PathwayBrowser
Expand all
Metabolism of RNA (Xenopus tropicalis)
Processing of Capped Intron-Containing Pre-mRNA (Xenopus tropicalis)
mRNA 3'-end processing (Xenopus tropicalis)
mRNA Polyadenylation (Xenopus tropicalis)
Core CPA complex binds capped pre-mRNA (Xenopus tropicalis)
Core CPA complex:Spliceosomal A complex (uncleaved pre-mRNA) [nucleoplasm] (Xenopus tropicalis)
Spliceosomal A complex (capped, methylated pre-mRNA) [nucleoplasm] (Xenopus tropicalis)
prpf40a [nucleoplasm] (Xenopus tropicalis)
Spliceosomal A complex (capped, methylated pre-mRNA) [nucleoplasm] (Xenopus tropicalis)
prpf40a [nucleoplasm] (Xenopus tropicalis)
PP1 dephosphorylates RNA Pol II (Xenopus tropicalis)
CPA:Spliceosomal A complex (uncleaved pre-mRNA) [nucleoplasm] (Xenopus tropicalis)
Spliceosomal A complex (capped, methylated pre-mRNA) [nucleoplasm] (Xenopus tropicalis)
prpf40a [nucleoplasm] (Xenopus tropicalis)
CPA:Spliceosomal A complex (uncleaved pre-mRNA, RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Xenopus tropicalis)
Spliceosomal A complex (RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Xenopus tropicalis)
prpf40a [nucleoplasm] (Xenopus tropicalis)
RBBP6 activates CPSF complex (Xenopus tropicalis)
CPA:Spliceosomal A complex (uncleaved pre-mRNA, RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Xenopus tropicalis)
Spliceosomal A complex (RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Xenopus tropicalis)
prpf40a [nucleoplasm] (Xenopus tropicalis)
Ub-K63-CPA:Spliceosomal A complex (uncleaved pre-mRNA, RNA Pol II Ser2 dephosphorylated) [nucleoplasm] (Xenopus tropicalis)
Spliceosomal A complex (RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Xenopus tropicalis)
prpf40a [nucleoplasm] (Xenopus tropicalis)
External Reference Information
External Reference
UniProt:A0A8J0QGJ3
Gene Names
prpf40a
Reference Genes
BioGPS Gene:100170464 prpf40a
ENSEMBL:ENSXETG00000021713
KEGG:xtr:100170464 prpf40a
Monarch:100170464 prpf40a
NCBI Gene:100170464 prpf40a
UCSC:A0A8J0QGJ3 prpf40a
Reference Transcript
RefSeq:NM_001256940.1 prpf40a
Participates
as a component of
Spliceosomal A complex (pre-mRNA cleaved at intronal PAS) [nucleoplasm] (Xenopus tropicalis)
Spliceosomal A complex (pre-mRNA polyadenylated at intronic PAS) [nucleoplasm] (Xenopus tropicalis)
Spliceosomal A complex (pre-mRNA cleaved at proximal 3'UTR PAS) [nucleoplasm] (Xenopus tropicalis)
Spliceosomal A complex (pre-mRNA polyadenylated at proximal 3'UTR PAS) [nucleoplasm] (Xenopus tropicalis)
Spliceosomal A complex (RNA Pol II Ser5 dephosphorylated) [nucleoplasm] (Xenopus tropicalis)
Spliceosomal A complex (pre-mRNA cleaved at distal 3'UTR PAS) [nucleoplasm] (Xenopus tropicalis)
Spliceosomal A complex (pre-mRNA polyadenylated at distal 3'UTR PAS) [nucleoplasm] (Xenopus tropicalis)
Spliceosomal A complex (capped, methylated pre-mRNA) [nucleoplasm] (Xenopus tropicalis)
Spliceosomal E complex [nucleoplasm] (Xenopus tropicalis)
Spliceosomal A complex (capped, methylated, polyadenylated pre-mRNA) [nucleoplasm] (Xenopus tropicalis)
Spliceosomal Pre-B complex [nucleoplasm] (Xenopus tropicalis)
Inferred From
PRPF40A [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
NP_001243869.1
Xenbase
XB-GENE-988694
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