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prpf19 [nucleoplasm]
Stable Identifier
R-XTR-5420907
Type
Protein [EntityWithAccessionedSequence]
Species
Xenopus tropicalis
Compartment
nucleoplasm
Synonyms
PRPF19, Q6GLG2
Locations in the PathwayBrowser
Expand all
DNA Repair (Xenopus tropicalis)
Nucleotide Excision Repair (Xenopus tropicalis)
Transcription-Coupled Nucleotide Excision Repair (TC-NER) (Xenopus tropicalis)
Dual incision in TC-NER (Xenopus tropicalis)
5' incision of damaged DNA strand by ERCC1:ERCC4 in TC-NER (Xenopus tropicalis)
TC-NER incision complex [nucleoplasm] (Xenopus tropicalis)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Xenopus tropicalis)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
prpf19 [nucleoplasm] (Xenopus tropicalis)
TC-NER incision complex:5'-incised damaged DNA:trimmed nascent mRNA [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
prpf19 [nucleoplasm] (Xenopus tropicalis)
DNA polymerases delta, epsilon or kappa bind the TC-NER site (Xenopus tropicalis)
TC-NER incision complex: 5'-incised damaged DNA:trimmed nascent mRNA:(PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
prpf19 [nucleoplasm] (Xenopus tropicalis)
TC-NER incision complex:5'-incised damaged DNA:trimmed nascent mRNA [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
prpf19 [nucleoplasm] (Xenopus tropicalis)
ERCC2-facilitated RNA Pol II backtracking in TC-NER (Xenopus tropicalis)
TC-NER pre-incision complex [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
prpf19 [nucleoplasm] (Xenopus tropicalis)
TC-NER pre-incision complex:Partially open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
prpf19 [nucleoplasm] (Xenopus tropicalis)
ERCC3-facilitated RNA Pol II backtracking in TC-NER (Xenopus tropicalis)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
prpf19 [nucleoplasm] (Xenopus tropicalis)
TC-NER pre-incision complex:Partially open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
prpf19 [nucleoplasm] (Xenopus tropicalis)
Formation of TC-NER Pre-Incision Complex (Xenopus tropicalis)
UVSSA:USP7 deubiquitinates ERCC6 (Xenopus tropicalis)
TC-NER pre-incision complex [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
prpf19 [nucleoplasm] (Xenopus tropicalis)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:Ub:ERCC6:ERCC8:DDB1:CUL4:RBX1:UVSSA:USP7:XAB2 complex:XPA:TCEA1:HMGN1:EP300 [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
prpf19 [nucleoplasm] (Xenopus tropicalis)
Gap-filling DNA repair synthesis and ligation in TC-NER (Xenopus tropicalis)
Ligation of newly synthesized repair patch to incised DNA in TC-NER (Xenopus tropicalis)
TC-NER post-incision complex:SSB-dsDNA:trimmed nascent mRNA: (PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
prpf19 [nucleoplasm] (Xenopus tropicalis)
TC-NER post-incision complex:dsDNA with transcription bubble [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
prpf19 [nucleoplasm] (Xenopus tropicalis)
Repair DNA synthesis of ~27-30 bases long patch by POLD, POLE or POLK in TC-NER (Xenopus tropicalis)
TC-NER post-incision complex:SSB-dsDNA:trimmed nascent mRNA: (PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
prpf19 [nucleoplasm] (Xenopus tropicalis)
TC-NER post-incision complex:incised DNA without lesion:trimmed nascent mRNA:PCNA:(PCNA:POLD,POLE),(MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
prpf19 [nucleoplasm] (Xenopus tropicalis)
External Reference Information
External Reference
UniProt:Q6GLG2
Gene Names
prpf19
Reference Genes
BioGPS Gene:448017 prpf19
ENSEMBL:ENSXETG00000011938
KEGG Gene (Xenopus tropicalis):448017 prpf19
Monarch:448017 prpf19
NCBI Gene:448017 prpf19
Reference Transcript
RefSeq:NM_001005435.1 prpf19
Other Identifiers
448017
GO:0000398
GO:0000974
GO:0003824
GO:0004842
GO:0005515
GO:0005634
GO:0005654
GO:0005681
GO:0005811
GO:0006281
GO:0006397
GO:0006974
GO:0008380
GO:0016071
GO:0016567
GO:0016740
GO:0036211
GO:0043226
GO:0061630
GO:0070534
GO:0140096
Participates
as a component of
PRP19-CDC5L complex [nucleoplasm] (Xenopus tropicalis)
XAB2 complex [nucleoplasm] (Xenopus tropicalis)
Inferred From
PRPF19 [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
NP_001005435.1
Xenbase
XB-GENE-975233
Ensembl
ENSXETG00000011938
,
ENSXETT00000026115
,
ENSXETP00000026115
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