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CDK9 [nucleoplasm]
Stable Identifier
R-XTR-51801
Type
Protein [EntityWithAccessionedSequence]
Species
Xenopus tropicalis
Compartment
nucleoplasm
Synonyms
Q6GLD8
Locations in the PathwayBrowser
Expand all
Gene expression (Transcription) (Xenopus tropicalis)
RNA Polymerase II Transcription (Xenopus tropicalis)
Generic Transcription Pathway (Xenopus tropicalis)
Transcriptional Regulation by TP53 (Xenopus tropicalis)
TP53 Regulates Transcription of DNA Repair Genes (Xenopus tropicalis)
CCNK:CDK12 binds RNA Pol II at DNA repair genes (Xenopus tropicalis)
CCNK:CDK12:Elongation Complex at DNA Repair Genes [nucleoplasm] (Xenopus tropicalis)
Elongation Complex at DNA Repair Genes [nucleoplasm] (Xenopus tropicalis)
Hyperphosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
Elongation Complex at DNA Repair Genes [nucleoplasm] (Xenopus tropicalis)
Hyperphosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
CDK12 phosphorylates RNA Pol II CTD at DNA repair genes (Xenopus tropicalis)
CCNK:CDK12:CDK12-Phosphorylated Elongation Complex at DNA repair genes [nucleoplasm] (Xenopus tropicalis)
CDK12-Phosphorylated Elongation Complex [nucleoplasm] (Xenopus tropicalis)
CDK12-phosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
CCNK:CDK12:Elongation Complex at DNA Repair Genes [nucleoplasm] (Xenopus tropicalis)
Elongation Complex at DNA Repair Genes [nucleoplasm] (Xenopus tropicalis)
Hyperphosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
RNA Polymerase II Pre-transcription Events (Xenopus tropicalis)
2-4 nt.backtracking of Pol II complex on the template leading to elongation pausing (Xenopus tropicalis)
Paused processive elongation complex [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
Processive elongation complex [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
7-14 nt. Backtracking of Pol II complex on the template leading to elongation arrest (Xenopus tropicalis)
Processive elongation complex [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
Abortive termination of elongation after arrest (Xenopus tropicalis)
Aborted elongation complex after arrest [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
Processive elongation complex [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
Formation of P-TEFb complex (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
Resumption of elongation after recovery from pausing (Xenopus tropicalis)
Paused processive elongation complex [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
Processive elongation complex [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
TFIIS-mediated recovery of elongation from arrest (Xenopus tropicalis)
Processive elongation complex [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
RNA Polymerase II Transcription Elongation (Xenopus tropicalis)
Addition of nucleotides leads to transcript elongation (Xenopus tropicalis)
Elongation complex [nucleoplasm] (Xenopus tropicalis)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
Processive elongation complex [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
Formation of RNA Pol II elongation complex (Xenopus tropicalis)
Hyperphosphorylation (Ser2) of RNA Pol II CTD by P-TEFb complex (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
Recruitment of elongation factors to form elongation complex (Xenopus tropicalis)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
Elongation complex [nucleoplasm] (Xenopus tropicalis)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
Pol II elongation complex moves on the template as transcript elongates (Xenopus tropicalis)
Elongation complex prior to separation [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
Processive elongation complex [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
Separation of elongating transcript from template (Xenopus tropicalis)
Elongation complex prior to separation [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
Elongation complex with separated and uncleaved transcript [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
RNA polymerase II transcribes snRNA genes (Xenopus tropicalis)
CDK7 phosphorylates serine-5 and serine-7 of heptad repeats in C-terminal domain of RNA polymerase II at snRNA promoter (Xenopus tropicalis)
RNA polymerase II (phosphoserine-5,7):Initiation factors:CDK7:snRNA gene [nucleoplasm] (Xenopus tropicalis)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
RNA polymerase II (unphosphorylated):Initiation factors at promoter of snRNA gene [nucleoplasm] (Xenopus tropicalis)
RNA polymerase II (unphosphorylated):Initiation factors [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
Integrator complex processes the 3' end of snRNA (Xenopus tropicalis)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:CBCAP:capped pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Xenopus tropicalis)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:Initiation factors:snRNA gene [nucleoplasm] (Xenopus tropicalis)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
Pre-snRNA is elongated and capped with 7-methylguanosine (Xenopus tropicalis)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:capped pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Xenopus tropicalis)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
RNA polymerase II (phosphoserine-5,7):RPRD1A,B:RPRD2:RPAP2:Integrator:LEC:pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Xenopus tropicalis)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
RNA polymerase II binds initiation factors at promoter of snRNA gene (U1, U2, U4, U4atac, U5, U11, U12) (Xenopus tropicalis)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
RNA polymerase II (unphosphorylated):Initiation factors at promoter of snRNA gene [nucleoplasm] (Xenopus tropicalis)
RNA polymerase II (unphosphorylated):Initiation factors [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
RPAP2 binds RNA polymerase II phosphorylated at serine-7 residues of heptad repeats in the C-terminal domain (Xenopus tropicalis)
RNA polymerase II (phosphoserine-5,7):Initiation factors:CDK7:snRNA gene [nucleoplasm] (Xenopus tropicalis)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
RPAP2:RPRD1A,B:RPRD2:RNA polymerase II (phosphoserine-5,7):Initiation factors:snRNA gene [nucleoplasm] (Xenopus tropicalis)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
Signal Transduction (Xenopus tropicalis)
Signaling by Nuclear Receptors (Xenopus tropicalis)
ESR-mediated signaling (Xenopus tropicalis)
Estrogen-dependent gene expression (Xenopus tropicalis)
p-TEFb phosphorylates serine 2 in RNA polymerase II CTD (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
MYB gene:hyperphosphorylated RNA polymerase II:TFIIF:ESR1:ESTG:P-TEFb [nucleoplasm] (Xenopus tropicalis)
ESR1:ESTG:P-TEFb [nucleoplasm] (Xenopus tropicalis)
P-TEFb(Cyclin T1:Cdk9) complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
MYB gene:hypophosphorylated RNA polymerase II:TFIIF:ESR1:ESTG:P-TEFb [nucleoplasm] (Xenopus tropicalis)
ESR1:ESTG:P-TEFb [nucleoplasm] (Xenopus tropicalis)
P-TEFb(Cyclin T1:Cdk9) complex [nucleoplasm] (Xenopus tropicalis)
CDK9 [nucleoplasm] (Xenopus tropicalis)
External Reference Information
External Reference
UniProt:Q6GLD8
Reference Genes
BioGPS Gene:448039
ENSEMBL:ENSXETG00000024742
KEGG Gene (Xenopus tropicalis):448039
Monarch:448039
NCBI Gene:448039
Reference Transcript
RefSeq:NM_001005448.1
Other Identifiers
448039
GO:0000166
GO:0003824
GO:0004672
GO:0004674
GO:0004693
GO:0005524
GO:0005634
GO:0005654
GO:0006351
GO:0006355
GO:0006366
GO:0006468
GO:0008353
GO:0016301
GO:0016310
GO:0016740
GO:0032968
GO:0036211
GO:0043226
GO:0045944
GO:0051726
GO:0070691
GO:0106310
GO:0120187
GO:0140096
Participates
as an input of
Formation of P-TEFb complex (Xenopus tropicalis)
as a component of
P-TEFb(Cyclin T1:Cdk9) complex [nucleoplasm] (Xenopus tropicalis)
P-TEFb complex [nucleoplasm] (Xenopus tropicalis)
Inferred From
CDK9 [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
NP_001005448.1
IntEnz
2.7.11.23
Xenbase
XB-GENE-483721
Ensembl
ENSXETG00000024742
,
ENSXETT00000031527
,
ENSXETP00000031527
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