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gpc6 [Golgi lumen]
Stable Identifier
R-XTR-2064104
Type
Protein [EntityWithAccessionedSequence]
Species
Xenopus tropicalis
Compartment
Golgi lumen
Synonyms
Gal-Xyl-GPC6, A0A803K187
Locations in the PathwayBrowser
Expand all
Metabolism (Xenopus tropicalis)
Metabolism of carbohydrates (Xenopus tropicalis)
Glycosaminoglycan metabolism (Xenopus tropicalis)
Chondroitin sulfate/dermatan sulfate metabolism (Xenopus tropicalis)
A tetrasaccharide linker sequence is required for GAG synthesis (Xenopus tropicalis)
B3GALT6 transfers Gal to the tetrasaccharide linker (Xenopus tropicalis)
Gal-Xyl-proteins [Golgi lumen] (Xenopus tropicalis)
gpc6 [Golgi lumen] (Xenopus tropicalis)
B4GALT7 transfers Gal group to xylosyl-unit of the tetrasaccharide linker (Xenopus tropicalis)
Gal-Xyl-proteins [Golgi lumen] (Xenopus tropicalis)
gpc6 [Golgi lumen] (Xenopus tropicalis)
Heparan sulfate/heparin (HS-GAG) metabolism (Xenopus tropicalis)
A tetrasaccharide linker sequence is required for GAG synthesis (Xenopus tropicalis)
B3GALT6 transfers Gal to the tetrasaccharide linker (Xenopus tropicalis)
Gal-Xyl-proteins [Golgi lumen] (Xenopus tropicalis)
gpc6 [Golgi lumen] (Xenopus tropicalis)
B4GALT7 transfers Gal group to xylosyl-unit of the tetrasaccharide linker (Xenopus tropicalis)
Gal-Xyl-proteins [Golgi lumen] (Xenopus tropicalis)
gpc6 [Golgi lumen] (Xenopus tropicalis)
External Reference Information
External Reference
UniProt:A0A803K187
Gene Names
gpc6
Reference Genes
BioGPS Gene:100491173 gpc6
ENSEMBL:ENSXETG00000039039
KEGG Gene (Xenopus tropicalis):100491173 gpc6
Monarch:100491173 gpc6
NCBI Gene:100491173 gpc6
Reference Transcript
RefSeq:XM_012957513.3 gpc6
Other Identifiers
100491173
GO:0005886
GO:0009966
GO:0016020
GO:0023052
GO:0030312
GO:0031012
GO:0062023
GO:0098552
Participates
as a member of
Gal-Xyl-proteins [Golgi lumen] (Xenopus tropicalis)
Other forms of this molecule
gpc6 [lysosomal lumen]
gpc6 [lysosomal lumen]
gpc6 [Golgi lumen]
gpc6 [Golgi lumen]
gpc6 [plasma membrane]
gpc6 [plasma membrane]
gpc6 [plasma membrane]
gpc6 [plasma membrane]
gpc6 [plasma membrane]
gpc6 [plasma membrane]
gpc6 [Golgi lumen]
gpc6 [Golgi lumen]
gpc6 [Golgi lumen]
gpc6 [Golgi lumen]
gpc6 [Golgi lumen]
gpc6 [Golgi lumen]
gpc6 [Golgi lumen]
gpc6 [Golgi lumen]
gpc6 [Golgi lumen]
gpc6 [Golgi lumen]
gpc6 [Golgi lumen]
gpc6 [Golgi lumen]
gpc6 [Golgi lumen]
Inferred From
Gal-Xyl-GPC6 [Golgi lumen]
(Homo sapiens)
Modified Residues
Name
O-xylosyl-L-serine (ChEBI:63502) at unknown position
Modification
beta-D-Gal-(1->4)-beta-D-Xyl-yl group
PsiMod Name
O-xylosyl-L-serine
PsiMod Definition
A protein modification that effectively converts an L-serine residue to O3-xylosylserine.
Cross References
RefSeq
XP_012812967.2
Xenbase
XB-GENE-6037689
Ensembl
ENSXETP00000114084
,
ENSXETT00000117592
,
ENSXETG00000039039
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