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SYF1 [nucleoplasm]
Stable Identifier
R-SCE-67411
Type
Protein [EntityWithAccessionedSequence]
Species
Saccharomyces cerevisiae
Compartment
nucleoplasm
Synonyms
XAB2, Q04048
Locations in the PathwayBrowser
Expand all
DNA Repair (Saccharomyces cerevisiae)
Nucleotide Excision Repair (Saccharomyces cerevisiae)
Transcription-Coupled Nucleotide Excision Repair (TC-NER) (Saccharomyces cerevisiae)
Dual incision in TC-NER (Saccharomyces cerevisiae)
5' incision of damaged DNA strand by ERCC1:ERCC4 in TC-NER (Saccharomyces cerevisiae)
TC-NER incision complex [nucleoplasm] (Saccharomyces cerevisiae)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Saccharomyces cerevisiae)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Saccharomyces cerevisiae)
XAB2 complex [nucleoplasm] (Saccharomyces cerevisiae)
SYF1 [nucleoplasm] (Saccharomyces cerevisiae)
TC-NER incision complex:5'-incised damaged DNA:trimmed nascent mRNA [nucleoplasm] (Saccharomyces cerevisiae)
XAB2 complex [nucleoplasm] (Saccharomyces cerevisiae)
SYF1 [nucleoplasm] (Saccharomyces cerevisiae)
DNA polymerases delta, epsilon or kappa bind the TC-NER site (Saccharomyces cerevisiae)
TC-NER incision complex: 5'-incised damaged DNA:trimmed nascent mRNA:(PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Saccharomyces cerevisiae)
XAB2 complex [nucleoplasm] (Saccharomyces cerevisiae)
SYF1 [nucleoplasm] (Saccharomyces cerevisiae)
TC-NER incision complex:5'-incised damaged DNA:trimmed nascent mRNA [nucleoplasm] (Saccharomyces cerevisiae)
XAB2 complex [nucleoplasm] (Saccharomyces cerevisiae)
SYF1 [nucleoplasm] (Saccharomyces cerevisiae)
ERCC2-facilitated RNA Pol II backtracking in TC-NER (Saccharomyces cerevisiae)
TC-NER pre-incision complex [nucleoplasm] (Saccharomyces cerevisiae)
XAB2 complex [nucleoplasm] (Saccharomyces cerevisiae)
SYF1 [nucleoplasm] (Saccharomyces cerevisiae)
TC-NER pre-incision complex:Partially open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Saccharomyces cerevisiae)
XAB2 complex [nucleoplasm] (Saccharomyces cerevisiae)
SYF1 [nucleoplasm] (Saccharomyces cerevisiae)
ERCC3-facilitated RNA Pol II backtracking in TC-NER (Saccharomyces cerevisiae)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Saccharomyces cerevisiae)
XAB2 complex [nucleoplasm] (Saccharomyces cerevisiae)
SYF1 [nucleoplasm] (Saccharomyces cerevisiae)
TC-NER pre-incision complex:Partially open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Saccharomyces cerevisiae)
XAB2 complex [nucleoplasm] (Saccharomyces cerevisiae)
SYF1 [nucleoplasm] (Saccharomyces cerevisiae)
Formation of TC-NER Pre-Incision Complex (Saccharomyces cerevisiae)
UVSSA:USP7 deubiquitinates ERCC6 (Saccharomyces cerevisiae)
TC-NER pre-incision complex [nucleoplasm] (Saccharomyces cerevisiae)
XAB2 complex [nucleoplasm] (Saccharomyces cerevisiae)
SYF1 [nucleoplasm] (Saccharomyces cerevisiae)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:Ub:ERCC6:ERCC8:DDB1:CUL4:RBX1:UVSSA:USP7:XAB2 complex:XPA:TCEA1:HMGN1:EP300 [nucleoplasm] (Saccharomyces cerevisiae)
XAB2 complex [nucleoplasm] (Saccharomyces cerevisiae)
SYF1 [nucleoplasm] (Saccharomyces cerevisiae)
Gap-filling DNA repair synthesis and ligation in TC-NER (Saccharomyces cerevisiae)
Ligation of newly synthesized repair patch to incised DNA in TC-NER (Saccharomyces cerevisiae)
TC-NER post-incision complex:SSB-dsDNA:trimmed nascent mRNA: (PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Saccharomyces cerevisiae)
XAB2 complex [nucleoplasm] (Saccharomyces cerevisiae)
SYF1 [nucleoplasm] (Saccharomyces cerevisiae)
TC-NER post-incision complex:dsDNA with transcription bubble [nucleoplasm] (Saccharomyces cerevisiae)
XAB2 complex [nucleoplasm] (Saccharomyces cerevisiae)
SYF1 [nucleoplasm] (Saccharomyces cerevisiae)
Repair DNA synthesis of ~27-30 bases long patch by POLD, POLE or POLK in TC-NER (Saccharomyces cerevisiae)
TC-NER post-incision complex:SSB-dsDNA:trimmed nascent mRNA: (PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Saccharomyces cerevisiae)
XAB2 complex [nucleoplasm] (Saccharomyces cerevisiae)
SYF1 [nucleoplasm] (Saccharomyces cerevisiae)
TC-NER post-incision complex:incised DNA without lesion:trimmed nascent mRNA:PCNA:(PCNA:POLD,POLE),(MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Saccharomyces cerevisiae)
XAB2 complex [nucleoplasm] (Saccharomyces cerevisiae)
SYF1 [nucleoplasm] (Saccharomyces cerevisiae)
External Reference Information
External Reference
UniProt:Q04048
Gene Names
SYF1
Reference Genes
BioGPS Gene:852025 SYF1
ENSEMBL:YDR416W
KEGG Gene (Saccharomyces cerevisiae (strain RM11-1a)):YDR416W SYF1
Monarch:852025 SYF1
NCBI Gene:852025 SYF1
SGD:YDR416W
Reference Transcript
RefSeq:NM_001180724.1 SYF1
Other Identifiers
1770705_at
6067_at
852025
GO:0000349
GO:0000384
GO:0000386
GO:0000398
GO:0000974
GO:0003674
GO:0005515
GO:0005575
GO:0005634
GO:0005681
GO:0005737
GO:0005829
GO:0006396
GO:0006397
GO:0008150
GO:0008380
GO:0071004
GO:0071006
GO:0071007
GO:0071008
GO:0071014
Participates
as a component of
XAB2 complex [nucleoplasm] (Saccharomyces cerevisiae)
Inferred From
XAB2 [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
NP_010704.1
PRO
Q04048
PDB
5WSG
,
5MQ0
,
5YLZ
,
5MPS
,
6J6N
,
5LQW
,
5GMK
,
6EXN
,
6J6G
,
5Y88
,
5GM6
,
5LJ3
,
5LJ5
,
6J6H
,
6BK8
,
6J6Q
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