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Alyref [nucleoplasm]
Stable Identifier
R-MMU-156649
Type
Protein [EntityWithAccessionedSequence]
Species
Mus musculus
Compartment
nucleoplasm
Synonyms
ALYREF, O08583
Locations in the PathwayBrowser
Expand all
Gene expression (Transcription) (Mus musculus)
RNA Polymerase II Transcription (Mus musculus)
RNA Polymerase II Transcription Termination (Mus musculus)
Cleavage of mRNA at the 3'-end (Mus musculus)
3' end cleaved, ligated exon containing complex [nucleoplasm] (Mus musculus)
EJC [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
TREX (DDX39B:ATP) [nucleoplasm] (Mus musculus)
ALYREF, FYTTD1, LUZP4 [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
Spliced mRNA:CBC:EJC:TREX [nucleoplasm] (Mus musculus)
EJC [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
TREX (DDX39B:ATP) [nucleoplasm] (Mus musculus)
ALYREF, FYTTD1, LUZP4 [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
Metabolism of RNA (Mus musculus)
Processing of Capped Intron-Containing Pre-mRNA (Mus musculus)
Transport of Mature Transcript to Cytoplasm (Mus musculus)
Transport of Mature mRNA derived from an Intron-Containing Transcript (Mus musculus)
NXF1:NXT1 (TAP:p15) binds capped mRNA:CBC:EJC:TREX (minus DDX39B) (Mus musculus)
NXF1,2:NXT1::polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Mus musculus)
capped mRNA:CBC:EJC:TREX (minus DDX39B) [nucleoplasm] (Mus musculus)
EJC [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
TREX (minus DDX39B) [nucleoplasm] (Mus musculus)
ALYREF, FYTTD1, LUZP4 [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Mus musculus)
EJC [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
TREX (DDX39B:ATP) [nucleoplasm] (Mus musculus)
ALYREF, FYTTD1, LUZP4 [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
Transport of the export-competent mRNP complex through the NPC (Mus musculus)
NPC:NXF1,2:NXT1:EJC:CBC:mRNA [nucleoplasm] (Mus musculus)
EJC [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
Transport of Mature mRNAs Derived from Intronless Transcripts (Mus musculus)
Transport of Mature mRNA Derived from an Intronless Transcript (Mus musculus)
Docking of the Mature intronless derived transcript derived mRNA, TAP and Aly/Ref at the NPC (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
Nucleoplasmic mature intronless derived mRNA:TAP:Aly/Ref complex [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
Transport of the Mature intronless transcript derived mRNA:TAP:Aly/Ref Complex through the NPC (Mus musculus)
Nucleoplasmic mature intronless derived mRNA:TAP:Aly/Ref complex [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
Transport of the SLBP Dependant Mature mRNA (Mus musculus)
Docking of Mature Replication Dependent Histone mRNA with the NPC (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
Mature intronless transcript derived Histone mRNA:SLBP:TAP:Aly/Ref complex [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
Transport of the Mature IntronlessTranscript Derived Histone mRNA:SLBP:TAP:Aly/Ref complex through the NPC (Mus musculus)
Mature intronless transcript derived Histone mRNA:SLBP:TAP:Aly/Ref complex [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
Transport of the SLBP independent Mature mRNA (Mus musculus)
Docking of Mature Histone mRNA complex:TAP at the NPC (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
Mature Intronless Transcript Derived Histone mRNA:TAP:Aly/Ref complex [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
Transport of the Mature Intronless Transcript Derived Histone mRNA:TAP:Aly/Ref Complex through the NPC (Mus musculus)
Mature Intronless Transcript Derived Histone mRNA:TAP:Aly/Ref complex [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
mRNA 3'-end processing (Mus musculus)
Cleavage of mRNA at the 3'-end (Mus musculus)
3' end cleaved, ligated exon containing complex [nucleoplasm] (Mus musculus)
EJC [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
TREX (DDX39B:ATP) [nucleoplasm] (Mus musculus)
ALYREF, FYTTD1, LUZP4 [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
Spliced mRNA:CBC:EJC:TREX [nucleoplasm] (Mus musculus)
EJC [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
TREX (DDX39B:ATP) [nucleoplasm] (Mus musculus)
ALYREF, FYTTD1, LUZP4 [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
TREX complex binds spliced, capped mRNA:CBC:EJC cotranscriptionally (Mus musculus)
ALYREF, FYTTD1, LUZP4 [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
Spliced mRNA:CBC:EJC:TREX [nucleoplasm] (Mus musculus)
EJC [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
TREX (DDX39B:ATP) [nucleoplasm] (Mus musculus)
ALYREF, FYTTD1, LUZP4 [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
Spliced mRNP [nucleoplasm] (Mus musculus)
EJC [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
mRNA polyadenylation (Mus musculus)
3' end cleaved, ligated exon containing complex [nucleoplasm] (Mus musculus)
EJC [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
TREX (DDX39B:ATP) [nucleoplasm] (Mus musculus)
ALYREF, FYTTD1, LUZP4 [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Mus musculus)
EJC [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
TREX (DDX39B:ATP) [nucleoplasm] (Mus musculus)
ALYREF, FYTTD1, LUZP4 [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
mRNA Splicing (Mus musculus)
mRNA Splicing - Major Pathway (Mus musculus)
Formation of the Spliceosomal B complex (Mus musculus)
Spliceosomal B complex [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
Spliceosomal Pre-B complex [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
Formation of the Spliceosomal Bact complex (Mus musculus)
Spliceosomal B complex [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
Spliceosomal Bact complex [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
Formation of the Spliceosomal C* complex (Mus musculus)
Spliceosomal C complex [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
Spliceosomal C* complex [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
Formation of the Spliceosomal P complex and exon ligation (Mus musculus)
Spliceosomal C* complex [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
Spliceosomal P complex [nucleoplasm] (Mus musculus)
spliced mRNA:EJC:CBC complex:Alternative splicing factor [nucleoplasm] (Mus musculus)
EJC [nucleoplasm] (Mus musculus)
Alyref [nucleoplasm] (Mus musculus)
External Reference Information
External Reference
UniProt:O08583
Gene Names
Alyref
Reference Genes
BioGPS Gene:21681 Alyref
ENSEMBL:ENSMUSG00000025134
ENSEMBL:ENSMUSG00000025134.3 Alyref
KEGG Gene (Mus musculus):21681 Alyref
Monarch:21681 Alyref
NCBI Gene:21681 Alyref
UCSC:O08583 Alyref
Reference Transcript
RefSeq:NM_011568.1 Alyref
Other Identifiers
10393844
104863_at
135150_at
1417724_at
1422993_s_at
1436211_at
160633_at
17273191
21681
4401728
4581785
4584359
4600158
4988275
5069291
5125603
5199587
5201132
5282671
5296329
5357442
A_51_P154684
A_65_P14869
GE36191
GO:0000018
GO:0000346
GO:0000781
GO:0003676
GO:0003677
GO:0003697
GO:0003723
GO:0003729
GO:0005634
GO:0005654
GO:0005681
GO:0005694
GO:0005737
GO:0006260
GO:0006310
GO:0006351
GO:0006355
GO:0006397
GO:0006405
GO:0006406
GO:0006913
GO:0008380
GO:0016071
GO:0016607
GO:0031297
GO:0032786
GO:0034337
GO:0035145
GO:0043226
GO:0046784
GO:0051028
GO:0060090
GO:0062153
GO:0071013
GO:0140691
ILMN_2617245
ILMN_2747744
U89876_s_at
mMC025701
mMR001454
Participates
as a component of
Spliceosomal Bact complex [nucleoplasm] (Mus musculus)
Spliceosomal B complex [nucleoplasm] (Mus musculus)
Spliceosomal Pre-B complex [nucleoplasm] (Mus musculus)
Nucleoplasmic mature intronless derived mRNA:TAP:Aly/Ref complex [nucleoplasm] (Mus musculus)
Mature intronless transcript derived Histone mRNA:SLBP:TAP:Aly/Ref complex [nucleoplasm] (Mus musculus)
Mature Intronless Transcript Derived Histone mRNA:TAP:Aly/Ref complex [nucleoplasm] (Mus musculus)
Spliceosomal C complex [nucleoplasm] (Mus musculus)
Spliceosomal C* complex [nucleoplasm] (Mus musculus)
EJC [nucleoplasm] (Mus musculus)
EJC [nucleoplasm] (Mus musculus)
as an input of
Docking of the Mature intronless derived transcript derived mRNA, TAP and Aly/Ref at the NPC (Mus musculus)
Docking of Mature Replication Dependent Histone mRNA with the NPC (Mus musculus)
Docking of Mature Histone mRNA complex:TAP at the NPC (Mus musculus)
as a member of
ALYREF, FYTTD1, LUZP4 [nucleoplasm] (Mus musculus)
Other forms of this molecule
Alyref [cytosol]
Inferred From
ALYREF [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
NP_035698.1
Ensembl
ENSMUSG00000025134
,
ENSMUST00000026125
,
ENSMUSP00000026125
PRO
O08583
MGI
1341044
PDB
1NO8
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