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SYF2 [nucleoplasm]
Stable Identifier
R-HSA-8867884
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
nucleoplasm
Synonyms
Pre-mRNA-splicing factor SYF2, SYF2_HUMAN
Locations in the PathwayBrowser for interactor UniProt:O95273 CCDB1
Expand all
Metabolism of RNA (Homo sapiens)
Processing of Capped Intron-Containing Pre-mRNA (Homo sapiens)
mRNA Splicing (Homo sapiens)
mRNA Splicing - Major Pathway (Homo sapiens)
Lariat Formation and 5'-Splice Site Cleavage (Homo sapiens)
SYF2 [nucleoplasm] (Homo sapiens)
External Reference Information
External Reference
UniProt:O95926 SYF2
Gene Names
SYF2, CBPIN, GCIPIP
Chain
initiator methionine:1, chain:2-243
Reference Genes
BioGPS Gene:25949 SYF2
COSMIC (genes):SYF2 SYF2
CTD Gene:25949 SYF2
dbSNP Gene:25949 SYF2
ENSEMBL:ENSG00000117614 SYF2
HGNC:19824 SYF2
KEGG Gene (Homo sapiens):25949 SYF2
Monarch:25949 SYF2
NCBI Gene:25949 SYF2
OMIM:607090 SYF2
UCSC:O95926 SYF2
Reference Transcript
RefSeq:NM_015484.4 SYF2
RefSeq:NM_207170.3 SYF2
Other Identifiers
0002900494
11739101_a_at
11739102_a_at
16683644
202553_s_at
2402085
2402086
2402087
2402088
2402089
2402090
2402092
2402093
2402094
2402096
2402098
25949
32792_at
53454_r_at
7913814
A_23_P45756
A_33_P3264272
GE61206
GO:0000278
GO:0000398
GO:0000974
GO:0001701
GO:0003674
GO:0003723
GO:0005515
GO:0005575
GO:0005622
GO:0005634
GO:0005654
GO:0005681
GO:0006397
GO:0006950
GO:0007049
GO:0007095
GO:0007369
GO:0008150
GO:0008283
GO:0008284
GO:0008380
GO:0009790
GO:0016607
GO:0032991
GO:0034641
GO:0043226
GO:0048568
GO:0048856
GO:0071007
GO:0071013
GO:0071014
ILMN_1660186
ILMN_2287296
ILMN_2394498
PH_hs_0001741
TC01002373.hg
g7661635_3p_a_at
Participant Of
input
Lariat Formation and 5'-Splice Site Cleavage
hasComponent
pre-EJC:Spliceosomal C:pre-mRNP:CBC [nucleoplasm]
Spliceosomal active C complex with lariat containing, 5'-end cleaved pre-mRNP:CBC complex [nucleoplasm]
Inferred To
Syf2 [nucleoplasm] (Drosophila melanogaster)
Syf2 [nucleoplasm] (Mus musculus)
Syf2 [nucleoplasm] (Rattus norvegicus)
syf2 [nucleoplasm] (Danio rerio)
syf2 [nucleoplasm] (Xenopus tropicalis)
SYF2 [nucleoplasm] (Canis familiaris)
SYF2 [nucleoplasm] (Dictyostelium discoideum)
SYF2 [nucleoplasm] (Gallus gallus)
SYF2 [nucleoplasm] (Sus scrofa)
syf-2 [nucleoplasm] (Caenorhabditis elegans)
Cross References
RefSeq
NP_056299.1
,
NP_997053.1
OpenTargets
ENSG00000117614
GeneCards
O95926
HPA
ENSG00000117614-SYF2
Ensembl
ENSG00000117614
,
ENSP00000236273
,
ENST00000236273
,
ENSP00000346330
,
ENST00000354361
PRO
O95926
PDB
6ID0
,
5YZG
,
6QDV
,
6ID1
,
5XJC
,
5MQF
,
6ICZ
Interactors (4)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:Q9CSN1 Snw1
1
Snw1 [nucleoplasm]
(R-MMU-2065315)
0.564
2
UniProt:O95273 CCDB1
0.556
3
UniProt:Q9H6L4 ARMC7
0.556
3
UniProt:P40692 MLH1
3
MLH1 H329P [nucleoplasm]
(R-HSA-5444512)
MLH1 S252* [nucleoplasm]
(R-HSA-5444526)
MLH1 [nucleoplasm]
(R-HSA-912495)
0.556
3
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