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RTF1 [nucleoplasm]
Stable Identifier
R-HSA-8866693
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
nucleoplasm
Synonyms
RNA polymerase-associated protein RTF1 homolog, RTF1_HUMAN
Locations in the PathwayBrowser
Expand all
Gene expression (Transcription) (Homo sapiens)
RNA Polymerase II Transcription (Homo sapiens)
RNA Polymerase II Pre-transcription Events (Homo sapiens)
2-4 nt.backtracking of Pol II complex on the template leading to elongation pausing (Homo sapiens)
Paused processive elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
RTF1 [nucleoplasm] (Homo sapiens)
Processive elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
RTF1 [nucleoplasm] (Homo sapiens)
7-14 nt. Backtracking of Pol II complex on the template leading to elongation arrest (Homo sapiens)
Arrested processive elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
RTF1 [nucleoplasm] (Homo sapiens)
Processive elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
RTF1 [nucleoplasm] (Homo sapiens)
Abortive termination of elongation after arrest (Homo sapiens)
Aborted elongation complex after arrest [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
RTF1 [nucleoplasm] (Homo sapiens)
Arrested processive elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
RTF1 [nucleoplasm] (Homo sapiens)
Elongating transcript encounters a lesion in the template (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
RTF1 [nucleoplasm] (Homo sapiens)
Processive elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
RTF1 [nucleoplasm] (Homo sapiens)
Resumption of elongation after recovery from pausing (Homo sapiens)
Paused processive elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
RTF1 [nucleoplasm] (Homo sapiens)
Processive elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
RTF1 [nucleoplasm] (Homo sapiens)
TFIIS-mediated recovery of elongation from arrest (Homo sapiens)
Arrested processive elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
RTF1 [nucleoplasm] (Homo sapiens)
Processive elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
RTF1 [nucleoplasm] (Homo sapiens)
RNA Polymerase II Transcription Elongation (Homo sapiens)
Addition of nucleotides leads to transcript elongation (Homo sapiens)
Elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
RTF1 [nucleoplasm] (Homo sapiens)
Processive elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
RTF1 [nucleoplasm] (Homo sapiens)
Formation of RNA Pol II elongation complex (Homo sapiens)
Recruitment of elongation factors to form elongation complex (Homo sapiens)
Elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
RTF1 [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
RTF1 [nucleoplasm] (Homo sapiens)
Pol II elongation complex moves on the template as transcript elongates (Homo sapiens)
Elongation complex prior to separation [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
RTF1 [nucleoplasm] (Homo sapiens)
Processive elongation complex [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
RTF1 [nucleoplasm] (Homo sapiens)
Separation of elongating transcript from template (Homo sapiens)
Elongation complex prior to separation [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
RTF1 [nucleoplasm] (Homo sapiens)
Elongation complex with separated and uncleaved transcript [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
RTF1 [nucleoplasm] (Homo sapiens)
Metabolism of proteins (Homo sapiens)
Post-translational protein modification (Homo sapiens)
Protein ubiquitination (Homo sapiens)
E3 ubiquitin ligases ubiquitinate target proteins (Homo sapiens)
RNF20:RNF40 binds PAF complex, Ubiquitin:UBE2A,B (Ubiquitin:RAD6), WAC and Histone H2B (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
RTF1 [nucleoplasm] (Homo sapiens)
PAF1c:WAC:RNF20:RNF40:Ub:UBE2A,B:HIST1H2B [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
RTF1 [nucleoplasm] (Homo sapiens)
RNF20:RNF40 monoubiquitinates Histone H2B (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
RTF1 [nucleoplasm] (Homo sapiens)
PAF1c:WAC:RNF20:RNF40:Ub:UBE2A,B:HIST1H2B [nucleoplasm] (Homo sapiens)
PAF1C [nucleoplasm] (Homo sapiens)
RTF1 [nucleoplasm] (Homo sapiens)
External Reference Information
External Reference
UniProt:Q92541 RTF1
Gene Names
RTF1, KIAA0252
Chain
chain:1-710
Reference Genes
BioGPS Gene:23168 RTF1
COSMIC (genes):RTF1 RTF1
CTD Gene:23168 RTF1
dbSNP Gene:23168 RTF1
ENSEMBL:ENSG00000137815 RTF1
HGNC:28996 RTF1
KEGG:hsa:23168 RTF1
Monarch:23168 RTF1
NCBI Gene:23168 RTF1
OMIM:611633 RTF1
UCSC:Q92541 RTF1
Reference Transcript
RefSeq:NM_015138.4 RTF1
Other Identifiers
11717356_at
11717357_at
11717358_s_at
11717359_at
16799814
212301_PM_at
212301_at
212302_PM_at
212302_at
230832_PM_at
230832_at
23168
3590423
3590424
3590425
3590428
3590430
3590431
3590432
3590433
3590434
3590435
3590436
3590437
3590438
3590440
3590442
3590443
3590444
3590445
3590446
3590447
3590448
3590449
3590450
3590451
3590452
3590453
3590454
3590455
3590456
3590461
3590462
38436_at
77964_at
7982904
A_23_P77321
A_24_P390403
D87440_at
GE57396
GO:0000122
GO:0001711
GO:0001832
GO:0003677
GO:0003697
GO:0003723
GO:0005515
GO:0005634
GO:0005654
GO:0005730
GO:0006325
GO:0006355
GO:0006368
GO:0016055
GO:0016593
GO:0019827
GO:0043226
HMNXSV003000938
Hs.223713.0.A1_3p_at
Hs.83419.0.A1_3p_at
Hs.83419.0.A2_3p_at
ILMN_1791039
PH_hs_0004764
TC15000308.hg
TC15002165.hg
Participates
as a component of
PAF1C [nucleoplasm] (Homo sapiens)
Inferred To
Ghost homologue of RTF1 [nucleoplasm]
(Bos taurus)
Ghost homologue of RTF1 [nucleoplasm]
(Caenorhabditis elegans)
Ghost homologue of RTF1 [nucleoplasm]
(Canis familiaris)
Ghost homologue of RTF1 [nucleoplasm]
(Danio rerio)
Ghost homologue of RTF1 [nucleoplasm]
(Dictyostelium discoideum)
Ghost homologue of RTF1 [nucleoplasm]
(Drosophila melanogaster)
Ghost homologue of RTF1 [nucleoplasm]
(Gallus gallus)
Ghost homologue of RTF1 [nucleoplasm]
(Mus musculus)
Ghost homologue of RTF1 [nucleoplasm]
(Rattus norvegicus)
Ghost homologue of RTF1 [nucleoplasm]
(Saccharomyces cerevisiae)
Ghost homologue of RTF1 [nucleoplasm]
(Schizosaccharomyces pombe)
Ghost homologue of RTF1 [nucleoplasm]
(Sus scrofa)
Ghost homologue of RTF1 [nucleoplasm]
(Xenopus tropicalis)
Cross References
ENSEMBL
ENSG00000137815
,
ENST00000389629
,
ENSP00000374280
OpenTargets
ENSG00000137815
GeneCards
RTF1
HPA
ENSG00000137815-RTF1
PRO
Q92541
Pharos - Targets
Q92541
GlyGen
Q92541
PDB
7UND
,
7UNC
,
3U1U
,
4L1P
,
4L1U
,
2BZE
,
2DB9
,
8A3Y
,
6TED
Interactors (3)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:Q6P1J9 CDC73
1
CDC73 [nucleoplasm]
(R-HSA-3322360)
0.748
12
UniProt:P49407 ARRB1
6
ARRB1 [cytosol]
(R-HSA-264470)
PolyUb-ARRB1 [cytosol]
(R-HSA-6783186)
ARRB1 [endocytic vesicle membrane]
(R-HSA-9910882)
ARRB1 [lysosomal membrane]
(R-HSA-432701)
ARRB1 [Golgi membrane]
(R-HSA-350831)
ARRB1 [cytoplasmic vesicle membrane]
(R-HSA-351187)
0.564
2
UniProt:Q8WVC0 LEO1
1
LEO1 [nucleoplasm]
(R-HSA-3322361)
0.527
5
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