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SRSF6 [nucleoplasm]
Stable Identifier
R-HSA-72026
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
nucleoplasm
Synonyms
SRp55, Splicing factor, arginine/serine-rich 6 (Pre-mRNA splicing factor SRP55), Splicing factor, arginine/serine-rich 6, Pre-mRNA splicing factor SRP55
Locations in the PathwayBrowser
Expand all
Gene expression (Transcription) (Homo sapiens)
RNA Polymerase II Transcription (Homo sapiens)
RNA Polymerase II Transcription Termination (Homo sapiens)
Cleavage of mRNA at the 3'-end (Homo sapiens)
3' end cleaved, ligated exon containing complex [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
Spliced mRNA:CBC:EJC:TREX [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
Metabolism of RNA (Homo sapiens)
Processing of Capped Intron-Containing Pre-mRNA (Homo sapiens)
Transport of Mature Transcript to Cytoplasm (Homo sapiens)
Transport of Mature mRNA derived from an Intron-Containing Transcript (Homo sapiens)
Docking of the TAP:EJC Complex with the NPC (Homo sapiens)
NXF1,2:NXT1::polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Homo sapiens)
capped mRNA:CBC:EJC:TREX (minus DDX39B) [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
NXF1:NXT1 (TAP:p15) binds capped mRNA:CBC:EJC:TREX (minus DDX39B) (Homo sapiens)
NXF1,2:NXT1::polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Homo sapiens)
capped mRNA:CBC:EJC:TREX (minus DDX39B) [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
mRNA 3'-end processing (Homo sapiens)
Cleavage of mRNA at the 3'-end (Homo sapiens)
3' end cleaved, ligated exon containing complex [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
Spliced mRNA:CBC:EJC:TREX [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
TREX complex binds spliced, capped mRNA:CBC:EJC cotranscriptionally (Homo sapiens)
Spliced mRNA:CBC:EJC:TREX [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
Spliced mRNP [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
mRNA polyadenylation (Homo sapiens)
3' end cleaved, ligated exon containing complex [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
mRNA Splicing (Homo sapiens)
mRNA Splicing - Major Pathway (Homo sapiens)
Cleavage at the 3'-Splice Site and Exon Ligation (Homo sapiens)
Spliced mRNP [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
pre-EJC:Spliceosomal C:pre-mRNP:CBC [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
Formation of Exon Junction Complex (Homo sapiens)
Spliceosomal active C complex with lariat containing, 5'-end cleaved pre-mRNP:CBC complex [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
pre-EJC:Spliceosomal C:pre-mRNP:CBC [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
Formation of an intermediate Spliceosomal C (Bact) complex (Homo sapiens)
Spliceosomal B Complex [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
Spliceosomal Intermediate C (Bact) Complex [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal A Complex (Homo sapiens)
Spliceosomal A Complex [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
Spliceosomal E Complex [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal B Complex (Homo sapiens)
Spliceosomal A Complex [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
Spliceosomal B Complex [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal E complex (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
Spliceosomal E Complex [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
Formation of the active Spliceosomal C (B*) complex (Homo sapiens)
Spliceosomal Active C (B*) Complex [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
Spliceosomal Intermediate C (Bact) Complex [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
Lariat Formation and 5'-Splice Site Cleavage (Homo sapiens)
Spliceosomal Active C (B*) Complex [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
Spliceosomal active C complex with lariat containing, 5'-end cleaved pre-mRNP:CBC complex [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
mRNA Splicing - Minor Pathway (Homo sapiens)
ATAC spliceosome mediated 3' splice site cleavage, exon ligation (Homo sapiens)
ATAC C Complex with lariat containing 5'-end cleaved mRNA [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
post exon ligation complex [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
ATAC spliceosome mediated Lariat formation,5' splice site cleavage (Homo sapiens)
ATAC C Complex [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
ATAC C Complex with lariat containing 5'-end cleaved mRNA [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
Formation of AT-AC A complex (Homo sapiens)
ATAC A Complex [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
Formation of AT-AC B Complex (Homo sapiens)
ATAC A Complex [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
ATAC B Complex [nucleoplasm] (Homo sapiens)
ATAC A Complex [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
Formation of AT-AC C complex (Homo sapiens)
ATAC B Complex [nucleoplasm] (Homo sapiens)
ATAC A Complex [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
ATAC C Complex [nucleoplasm] (Homo sapiens)
SRSF6 [nucleoplasm] (Homo sapiens)
External Reference Information
External Reference
UniProt:Q13247 SRSF6
Gene Names
SRSF6, SFRS6, SRP55
Chain
chain:1-344
Reference Genes
BioGPS Gene:6431 SRSF6
COSMIC (genes):SRSF6 SRSF6
CTD Gene:6431 SRSF6
dbSNP Gene:6431 SRSF6
ENSEMBL:ENSG00000124193 SRSF6
HGNC:10788 SRSF6
KEGG Gene (Homo sapiens):6431 SRSF6
Monarch:6431 SRSF6
NCBI Gene:6431 SRSF6
OMIM:601944 SRSF6
UCSC:Q13247 SRSF6
Reference Transcript
RefSeq:NM_006275.5 SRSF6
Other Identifiers
0001980368
11716303_s_at
11745822_x_at
16913856
206108_s_at
208804_s_at
35808_at
35809_g_at
3747328
3747330
3747331
3747332
3747336
3747337
3747338
3886051
3886052
3886053
3886057
3886058
3886060
3886062
3886064
3886066
3886067
3886068
3886069
3886070
3886071
3975695
6431
8062695
A_14_P110688
A_14_P202404
A_23_P109017
A_33_P3220530
A_33_P3238455
GE56094
GE81615
GE86757
GE902686
GO:0000380
GO:0000381
GO:0000398
GO:0003674
GO:0003676
GO:0003723
GO:0003729
GO:0005515
GO:0005575
GO:0005622
GO:0005634
GO:0005654
GO:0006376
GO:0006397
GO:0006405
GO:0006406
GO:0006810
GO:0006913
GO:0006950
GO:0008150
GO:0008219
GO:0008283
GO:0008380
GO:0010629
GO:0010837
GO:0015031
GO:0016607
GO:0022607
GO:0022618
GO:0030154
GO:0031124
GO:0032868
GO:0034641
GO:0036002
GO:0043226
GO:0045292
GO:0045617
GO:0048025
GO:0048856
GO:0060501
GO:0060548
GO:0061041
GO:0065003
GO:2000675
Hs.6891.1.A2_3p_a_at
ILMN_1697469
PH_hs_0030938
TC20000316.hg
TC20001227.hg
U30828_at
g11225261_3p_a_at
Participant Of
hasComponent
3' end cleaved, ligated exon containing complex [nucleoplasm]
ATAC A Complex [nucleoplasm]
ATAC C Complex [nucleoplasm]
ATAC C Complex with lariat containing 5'-end cleaved mRNA [nucleoplasm]
capped mRNA:CBC:EJC:TREX (minus DDX39B) [nucleoplasm]
polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteins [nucleoplasm]
post exon ligation complex [nucleoplasm]
pre-EJC:Spliceosomal C:pre-mRNP:CBC [nucleoplasm]
Spliced mRNA:CBC:EJC:TREX [nucleoplasm]
Spliced mRNP [nucleoplasm]
Spliceosomal A Complex [nucleoplasm]
Spliceosomal Active C (B*) Complex [nucleoplasm]
Spliceosomal active C complex with lariat containing, 5'-end cleaved pre-mRNP:CBC complex [nucleoplasm]
Spliceosomal B Complex [nucleoplasm]
Spliceosomal E Complex [nucleoplasm]
Spliceosomal Intermediate C (Bact) Complex [nucleoplasm]
input
Formation of AT-AC A complex
Formation of the Spliceosomal E complex
output
Docking of the TAP:EJC Complex with the NPC
Inferred To
L3MBTL1 [nucleoplasm] (Canis familiaris)
L3MBTL1 [nucleoplasm] (Sus scrofa)
srsf6b [nucleoplasm] (Danio rerio)
Srsf6 [nucleoplasm] (Mus musculus)
Srsf6 [nucleoplasm] (Rattus norvegicus)
SRSF6 [nucleoplasm] (Gallus gallus)
tpd52 [nucleoplasm] (Xenopus tropicalis)
Ghost homologue of SRSF6 [nucleoplasm] (Caenorhabditis elegans)
Ghost homologue of SRSF6 [nucleoplasm] (Dictyostelium discoideum)
Ghost homologue of SRSF6 [nucleoplasm] (Drosophila melanogaster)
Cross References
RefSeq
NP_006266.2
OpenTargets
ENSG00000124193
GeneCards
Q13247
HPA
ENSG00000124193-SRSF6
Ensembl
ENSP00000433544
,
ENSG00000124193
,
ENSP00000244020
,
ENST00000244020
,
ENST00000483871
PRO
Q13247
Interactors (4)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:Q9Y383 LC7L2
0.781
7
UniProt:Q9NQ29-3 LUC7L
0.556
3
UniProt:Q08170 SRSF4
1
SRSF4 [nucleoplasm]
(R-HSA-72024)
0.553
2
UniProt:Q8NAV1 PRPF38A
1
PRPF38A [nucleoplasm]
(R-HSA-8867897)
0.508
2
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