Reactome | SNRNP40 [nucleoplasm]

SNRNP40 [nucleoplasm]

Stable Identifier

R-HSA-71877

Type

Protein [EntityWithAccessionedSequence]

Species

Homo sapiens

Compartment

nucleoplasm

Synonyms

U5-40 kDa protein

Locations in the PathwayBrowser

Expand all

External Reference Information

External Reference

UniProt:Q96DI7 SNRNP40

Gene Names

SNRNP40, PRP8BP, SFP38, WDR57

Chain

chain:1-357

Reference Genes

BioGPS Gene:9410 SNRNP40

COSMIC (genes):SNRNP40 SNRNP40

CTD Gene:9410 SNRNP40

dbSNP Gene:9410 SNRNP40

ENSEMBL:ENSG00000060688 SNRNP40

HGNC:30857 SNRNP40

KEGG:hsa:9410 SNRNP40

Monarch:9410 SNRNP40

NCBI Gene:9410 SNRNP40

OMIM:607797 SNRNP40

UCSC:Q96DI7 SNRNP40

Reference Transcript

RefSeq:NM_004814.2 SNRNP40

Other Identifiers

11722057_a_at

16684406

215905_PM_s_at

215905_s_at

2404378

2404379

2404380

2404381

2404382

2404383

2404384

2404389

2404390

2404391

2404392

2404393

2404394

2404395

2404397

2404398

2404401

2404402

2404403

2404404

2404405

2404406

2404408

2404409

2702048

2702049

41370_at

7914334

9410

A_23_P45913

A_24_P419309

GE54762

GO:0000375

GO:0000398

GO:0003723

GO:0005515

GO:0005634

GO:0005654

GO:0005681

GO:0005682

GO:0005732

GO:0005829

GO:0006396

GO:0006397

GO:0008380

GO:0016020

GO:0016071

GO:0016607

GO:0043226

GO:0046540

GO:0071007

GO:0071013

HMNXSV003026979

Hs.10290.1.S1_3p_a_at

ILMN_1799814

PH_hs_0024305

TC01002450.hg

Participates

as a component of

Inferred To

snrnp40 [nucleoplasm] (Danio rerio)

snrnp40 [nucleoplasm] (Dictyostelium discoideum)

snrnp40 [nucleoplasm] (Xenopus tropicalis)

Snrnp40 [nucleoplasm] (Mus musculus)

Snrnp40 [nucleoplasm] (Rattus norvegicus)

snrp-40.1 [nucleoplasm] (Caenorhabditis elegans)

SNRNP40 [nucleoplasm] (Bos taurus)

SNRNP40 [nucleoplasm] (Canis familiaris)

SNRNP40 [nucleoplasm] (Gallus gallus)

SNRNP40 [nucleoplasm] (Plasmodium falciparum)

SNRNP40 [nucleoplasm] (Sus scrofa)

snrp-40.2 [nucleoplasm] (Caenorhabditis elegans)

Dmel\CG3436 [nucleoplasm] (Drosophila melanogaster)

Homologues of SNRNP40 [nucleoplasm] (Caenorhabditis elegans)

cwf17 [nucleoplasm] (Schizosaccharomyces pombe)

Cross References

RefSeq

NP_004805.2

OpenTargets

ENSG00000060688

ENSEMBL

ENSP00000263694, ENST00000263694

HPA

ENSG00000060688-SNRNP40

PRO

Q96DI7

Pharos - Targets

Q96DI7

GlyGen

Q96DI7

PDB

8C6J, 8H6E, 8Q7W, 8QZS, 6QW6, 8Q7V, 8Q7X, 8Q7Q, 6ICZ, 5Z56, 6QX9, 8H6K, 5MQF, 6AHD, 6ID0, 8QXD, 6AH0, 8RC0, 7W5B, 7W59, 8H6J, 6QDV, 7ABI, 6ZYM, 5XJC, 5Z57, 8Y6O, 7W5A, 6ID1, 6FF7, 8H6L, 8CH6, 7ABG, 3JCR, 8R0B, 5O9Z, 7DVQ, 8RM5, 8R0A, 5Z58, 8QO9, 8R09, 5YZG, 8R08

Interactors (18)

Accession	#Entities	Entities	Confidence Score	Evidence (IntAct)
UniProt:O94906 PRPF6	1	PRPF6 [nucleoplasm] (R-HSA-71881)	0.744	5
UniProt:Q9BUQ8 DDX23	1	DDX23 [nucleoplasm] (R-HSA-71879)	0.744	5
UniProt:Q53GS9 USP39	1	USP39 [nucleoplasm] (R-HSA-6806793)	0.643	3
UniProt:P83876 TXNL4A	1	TXNL4A [nucleoplasm] (R-HSA-71875)	0.643	4
UniProt:P62306 SNRPF	2	SNRPF [cytosol] (R-HSA-191852) SNRPF [nucleoplasm] (R-HSA-71907)	0.643	3
UniProt:O75533 SF3B1	1	SF3B1 [nucleoplasm] (R-HSA-71968)	0.564	2
UniProt:Q9CSN1 Snw1	1	Snw1 [nucleoplasm] (R-MMU-2065315)	0.564	2
UniProt:P14136 GFAP	3	p-GFAP [lysosomal membrane] (R-HSA-9626054) GFAP [lysosomal membrane] (R-HSA-9625195) GFAP [cytosol] (R-HSA-1253311)	0.556	3
UniProt:O43290 SART1	1	SART1 [nucleoplasm] (R-HSA-4615999)	0.527	2
UniProt:Q8WUD4 CCDC12	1	CCDC12 [nucleoplasm] (R-HSA-9769561)	0.527	2
UniProt:Q9UBB9 TFIP11	1	TFIP11 [nucleoplasm] (R-HSA-8869310)	0.527	3
UniProt:Q13523 PRPF4B	1	PRPF4B [nucleoplasm] (R-HSA-9769525)	0.527	2
UniProt:P14678 SNRPB	4	2xMe-SNRPB [cytosol] (R-HSA-192218) SNRPB [cytosol] (R-HSA-191798) Me2-R108,R112-SNRPB [nucleoplasm] (R-HSA-192213) SNRPB [nucleoplasm] (R-HSA-71896)	0.527	3
UniProt:Q92620 DHX38	1	DHX38 [nucleoplasm] (R-HSA-72060)	0.527	2
UniProt:Q13573 SNW1	1	SNW1 [nucleoplasm] (R-HSA-351663)	0.527	2
UniProt:P62316 SNRPD2	2	SNRPD2 [cytosol] (R-HSA-191810) SNRPD2 [nucleoplasm] (R-HSA-71901)	0.527	3
UniProt:P62304 SNRPE	2	SNRPE [cytosol] (R-HSA-191782) SNRPE [nucleoplasm] (R-HSA-71905)	0.527	4
UniProt:Q8WVK2 SNRNP27	1	SNRNP27 [nucleoplasm] (R-HSA-6806778)	0.527	2