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Nucleosome [nucleoplasm]
Stable Identifier
R-HSA-427402
Type
Complex
Species
Homo sapiens
Compartment
nucleoplasm
Synonyms
Nucleosome (Deacetylated)
Locations in the PathwayBrowser
Expand all
Cellular responses to stimuli (Homo sapiens)
Cellular responses to stress (Homo sapiens)
Cellular Senescence (Homo sapiens)
Oxidative Stress Induced Senescence (Homo sapiens)
KDM6B demethylates H3K27me3 on p16INK4A promoter (Homo sapiens)
CDKN2A Gene:Nucleosome [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
PRC2-EZH2 trimethylates nucleosomes associated with CDKN2A promoter (Homo sapiens)
CDKN2A Gene:Nucleosome [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
Senescence-Associated Secretory Phenotype (SASP) (Homo sapiens)
EHMT1:EHMT2 methylates IL6 promoter (Homo sapiens)
IL6 gene:Nucleosome [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
EHMT1:EHMT2 methylates IL8 promoter (Homo sapiens)
IL8 gene:Nucleosome [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
Developmental Biology (Homo sapiens)
Transcriptional regulation of granulopoiesis (Homo sapiens)
SPI1 (PU.1) gene transcription is stimulated by RUNX1:CBFB:KMT2A (Homo sapiens)
SPI1 gene:Nucleosome [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
Disease (Homo sapiens)
Diseases of programmed cell death (Homo sapiens)
Defective pyroptosis (Homo sapiens)
The GSDME gene promoter is hypermethylated (Homo sapiens)
DNMT1,3A,3B:PRC2:Chromatin [nucleoplasm] (Homo sapiens)
PRC2 Core:Chromatin [nucleoplasm] (Homo sapiens)
Chromatin [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
Gene expression (Transcription) (Homo sapiens)
Epigenetic regulation of gene expression (Homo sapiens)
DNA methylation (Homo sapiens)
DNMT1 methylates cytosine in hemimethylated DNA (Homo sapiens)
DNMT1:UHRF1:Chromatin with hemimethylC [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
DNMT1:UHRF1:Chromatin with symmetric methylC [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
DNMT3A:DNMT3L binds chromatin (Homo sapiens)
Chromatin [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
DNMT3A:DNMT3L:Chromatin [nucleoplasm] (Homo sapiens)
Chromatin [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
DNMT3A:DNMT3L methylates cytosine in DNA (Homo sapiens)
DNMT3A:DNMT3L:Chromatin [nucleoplasm] (Homo sapiens)
Chromatin [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
DNMT3A:DNMT3L:Chromatin with 5mC [nucleoplasm] (Homo sapiens)
Chromatin with 5mC [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
DNMT3B:DNMT3L binds chromatin (Homo sapiens)
Chromatin [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
DNMT3B:DNMT3L:Chromatin [nucleoplasm] (Homo sapiens)
Chromatin [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
DNMT3B:DNMT3L methylates cytosine in DNA (Homo sapiens)
DNMT3B:DNMT3L:Chromatin [nucleoplasm] (Homo sapiens)
Chromatin [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
DNMT3B:DNMT3L:Chromatin with 5mC [nucleoplasm] (Homo sapiens)
Chromatin with 5mC [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
UHRF1 binds chromatin with hemimethylated cytosine (Homo sapiens)
Chromatin with hemimethylC [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
UHRF1:Chromatin with hemimethylC [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
UHRF1:Chromatin binds DNMT1 (Homo sapiens)
DNMT1:UHRF1:Chromatin with hemimethylC [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
UHRF1:Chromatin with hemimethylC [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
Negative epigenetic regulation of rRNA expression (Homo sapiens)
SIRT1 negatively regulates rRNA expression (Homo sapiens)
eNoSC deacetylates histone H3 (Homo sapiens)
Chromatin [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
eNoSC dimethylates histone H3 at lysine-9 (Homo sapiens)
Chromatin [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
PRC2 methylates histones and DNA (Homo sapiens)
DNMT1,3A,3B:PRC2 methylates cytosine and histone H3 (Homo sapiens)
DNMT1,3A,3B:PRC2:Chromatin [nucleoplasm] (Homo sapiens)
PRC2 Core:Chromatin [nucleoplasm] (Homo sapiens)
Chromatin [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
PRC2 recruits DNA methyltransferases (Homo sapiens)
DNMT1,3A,3B:PRC2:Chromatin [nucleoplasm] (Homo sapiens)
PRC2 Core:Chromatin [nucleoplasm] (Homo sapiens)
Chromatin [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
PRC2 Core:Chromatin [nucleoplasm] (Homo sapiens)
Chromatin [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
PRC2 trimethylates histone H3 at lysine-27 (Homo sapiens)
PRC2:Chromatin [nucleoplasm] (Homo sapiens)
Chromatin [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
Polycomb Repressive Complex 2 (PRC2) Is recruited to chromatin (Homo sapiens)
Chromatin [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
PRC2:Chromatin [nucleoplasm] (Homo sapiens)
Chromatin [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
Positive epigenetic regulation of rRNA expression (Homo sapiens)
B-WICH complex positively regulates rRNA expression (Homo sapiens)
B-WICH:histone acetyltransferase acetylates histone H3 at lysine-9 (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression (Homo sapiens)
TTF1:rRNA promoter:ERCC6:EHMT2 complex dimethylates histone H3 at lysine-9. (Homo sapiens)
Chromatin [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
Gene Silencing by RNA (Homo sapiens)
Transcriptional regulation by small RNAs (Homo sapiens)
AGO1,2:small RNA complexes interact with chromatin (Homo sapiens)
AGO1,2:miRNA:chromatin:RNA pol II [nucleoplasm] (Homo sapiens)
Chromatin [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
Chromatin [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
RNA Polymerase I Transcription (Homo sapiens)
RNA Polymerase I Promoter Clearance (Homo sapiens)
RNA Polymerase I Promoter Opening (Homo sapiens)
UBF-1 Binds rDNA Promoter (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
RNA Polymerase II Transcription (Homo sapiens)
Generic Transcription Pathway (Homo sapiens)
Transcriptional regulation by RUNX1 (Homo sapiens)
RUNX1 regulates transcription of genes involved in differentiation of HSCs (Homo sapiens)
KMT2A trimethylates nucleosomes at the SPI1 gene locus producing H3K4Me3 mark (Homo sapiens)
RUNX1:CBFB:KMT2A:SPI1 gene:Nucleosome [nucleoplasm] (Homo sapiens)
SPI1 gene:Nucleosome [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
RUNX1:CBFB:KMT2A binds SPI1 (PU.1) gene (Homo sapiens)
RUNX1:CBFB:KMT2A:SPI1 gene:Nucleosome [nucleoplasm] (Homo sapiens)
SPI1 gene:Nucleosome [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
SPI1 gene:Nucleosome [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
SPI1 (PU.1) gene transcription is stimulated by RUNX1:CBFB:KMT2A (Homo sapiens)
SPI1 gene:Nucleosome [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
Signal Transduction (Homo sapiens)
Signaling by NOTCH (Homo sapiens)
Pre-NOTCH Expression and Processing (Homo sapiens)
Pre-NOTCH Transcription and Translation (Homo sapiens)
NOTCH1 and NOTCH4 gene transcription is inhibited by SIRT6 (Homo sapiens)
SIRT6:Nucleosome:NOTCH1,NOTCH4 gene [nucleoplasm] (Homo sapiens)
SIRT6:Nucleosome:NOTCH1 gene [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
SIRT6:Nucleosome:NOTCH4 gene [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
SIRT6 deacetylates histones at NOTCH1 and NOTCH4 gene promoters (Homo sapiens)
SIRT6:Nucleosome:NOTCH1,NOTCH4 gene [nucleoplasm] (Homo sapiens)
SIRT6:Nucleosome:NOTCH1 gene [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
SIRT6:Nucleosome:NOTCH4 gene [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
Signaling by Nuclear Receptors (Homo sapiens)
ESR-mediated signaling (Homo sapiens)
Estrogen-dependent gene expression (Homo sapiens)
Estrogen-responsive GREB1 gene transcription (Homo sapiens)
GREB1 gene:nucleosome:ESR1:ESTG:ZNF217:NCOA3:NR5A2 [nucleoplasm] (Homo sapiens)
GREB1 gene:nucleosome:ESR1:ESTG [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
Estrogen-responsive KDM4B gene expression (Homo sapiens)
KDM4B gene:nucleoplasm:ESR1:ESTG [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
Estrogen-responsive MYC gene expression (Homo sapiens)
MYC gene:nucleoplasm:ESR1:ESTG [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
KDM4B demethylates H3K9me3 on estrogen-responsive target enhancers (Homo sapiens)
KDM4B-regulated genes:nucleosome:ESR1:ESTG [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
NR5A2, ZNF217 and NCOA3 bind GREB1 promoter (Homo sapiens)
GREB1 gene:nucleosome:ESR1:ESTG [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
GREB1 gene:nucleosome:ESR1:ESTG:ZNF217:NCOA3:NR5A2 [nucleoplasm] (Homo sapiens)
GREB1 gene:nucleosome:ESR1:ESTG [nucleoplasm] (Homo sapiens)
Nucleosome [nucleoplasm] (Homo sapiens)
Participants
components
x 2
HIST1H4 [nucleoplasm]
(Homo sapiens)
x 2
Histone H2A [nucleoplasm]
(Homo sapiens)
x 2
Histone H2B [nucleoplasm]
(Homo sapiens)
x 2
Histone H3 [nucleoplasm]
(Homo sapiens)
Participates
as a component of
KDM4B gene:nucleoplasm:ESR1:ESTG [nucleoplasm] (Homo sapiens)
KDM4B-regulated genes:nucleosome:ESR1:ESTG [nucleoplasm] (Homo sapiens)
GREB1 gene:nucleosome:ESR1:ESTG [nucleoplasm] (Homo sapiens)
MYC gene:nucleoplasm:ESR1:ESTG [nucleoplasm] (Homo sapiens)
DNMT1:UHRF1:Chromatin with symmetric methylC [nucleoplasm] (Homo sapiens)
Chromatin with hemimethylC [nucleoplasm] (Homo sapiens)
DNMT1:UHRF1:Chromatin with hemimethylC [nucleoplasm] (Homo sapiens)
UHRF1:Chromatin with hemimethylC [nucleoplasm] (Homo sapiens)
Chromatin with 5mC [nucleoplasm] (Homo sapiens)
Chromatin [nucleoplasm] (Homo sapiens)
SIRT6:Nucleosome:NOTCH1 gene [nucleoplasm] (Homo sapiens)
SIRT6:Nucleosome:NOTCH4 gene [nucleoplasm] (Homo sapiens)
IL8 gene:Nucleosome [nucleoplasm] (Homo sapiens)
IL6 gene:Nucleosome [nucleoplasm] (Homo sapiens)
SPI1 gene:Nucleosome [nucleoplasm] (Homo sapiens)
CDKN2A Gene:Nucleosome [nucleoplasm] (Homo sapiens)
as an input of
B-WICH:histone acetyltransferase acetylates histone H3 at lysine-9 (Homo sapiens)
This entity regulates
Negatively
UBF-1 Binds rDNA Promoter
(Homo sapiens)
Inferred To
Nucleosome [nucleoplasm]
(Bos taurus)
Nucleosome [nucleoplasm]
(Canis familiaris)
Nucleosome [nucleoplasm]
(Danio rerio)
Nucleosome [nucleoplasm]
(Gallus gallus)
Nucleosome [nucleoplasm]
(Mus musculus)
Nucleosome [nucleoplasm]
(Plasmodium falciparum)
Nucleosome [nucleoplasm]
(Rattus norvegicus)
Nucleosome [nucleoplasm]
(Sus scrofa)
Nucleosome [nucleoplasm]
(Xenopus tropicalis)
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