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5Hyl-COL6A6(20-?) [extracellular region]
Stable Identifier
R-HSA-2470077
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
extracellular region
Synonyms
5-hydroxylysyl-collagen alpha-6(VI) chain N-term fragment
Locations in the PathwayBrowser
Expand all
Extracellular matrix organization (Homo sapiens)
Degradation of the extracellular matrix (Homo sapiens)
Collagen degradation (Homo sapiens)
Collagen type VI degradation by MMP2,9,11 (Homo sapiens)
Cleaved collagen type VI fibril [extracellular region] (Homo sapiens)
Cleaved tropocollagen type VI tetramer [extracellular region] (Homo sapiens)
Cleaved tropocollagen type VI dimer [extracellular region] (Homo sapiens)
Cleaved tropocollagen type VI [extracellular region] (Homo sapiens)
Cleaved collagen alpha 3-6(VI) [extracellular region] (Homo sapiens)
Cleaved collagen alpha-6(VI) chains [extracellular region] (Homo sapiens)
5Hyl-COL6A6(20-?) [extracellular region] (Homo sapiens)
External Reference Information
External Reference
UniProt:A6NMZ7 COL6A6
Gene Names
COL6A6
Chain
signal peptide:1-19, chain:20-2263
Reference Genes
BioGPS Gene:131873 COL6A6
COSMIC (genes):COL6A6 COL6A6
CTD Gene:131873 COL6A6
dbSNP Gene:131873 COL6A6
ENSEMBL:ENSG00000206384 COL6A6
ENSEMBL_homo_sapiens_GENE:ENSG00000206384.11 COL6A6
HGNC:27023 COL6A6
KEGG Gene (Homo sapiens):131873 COL6A6
Monarch:131873 COL6A6
NCBI Gene:131873 COL6A6
OMIM:616613 COL6A6
UCSC:A6NMZ7 COL6A6
Reference Transcript
RefSeq:XM_017005712.1 COL6A6
RefSeq:XM_017005714.1 COL6A6
RefSeq:NM_001102608.1 COL6A6
RefSeq:XM_011512426.2 COL6A6
RefSeq:XM_011512425.2 COL6A6
RefSeq:XM_017005711.1 COL6A6
RefSeq:XM_005247121.4 COL6A6
RefSeq:XM_017005713.1 COL6A6
RefSeq:XM_011512428.2 COL6A6
RefSeq:XM_017005715.1 COL6A6
Other Identifiers
11756896_a_at
131873
16945540
16945543
230867_PM_at
230867_at
242641_PM_at
242641_at
2642182
2642183
2642184
2642185
2642188
2642191
2642192
2642193
2642195
2642196
2642197
2642198
2642201
2642202
2642203
2642206
2642207
2642208
2642209
2642211
2642213
2642214
2642215
2642216
2642217
2642221
2642223
2642226
2642227
2642229
2642232
2642233
2642234
2642235
2642236
2642242
2642243
2642244
2642246
2642248
2642252
2642253
2642258
2642259
2642260
63451_at
8082597
88669_at
A_32_P224525
GE574205
GO:0005198
GO:0005576
GO:0005581
GO:0007155
GO:0030020
GO:0030312
GO:0031012
GO:0062023
HMNXSV003050187
Hs.120388.0.A1_3p_at
Hs.263560.1.A1_3p_at
ILMN_1815679
PH_hs_0023311
TC03000705.hg
TC03002544.hg
TC03002545.hg
p28575
Participates
as a member of
Cleaved collagen alpha-6(VI) chains [extracellular region] (Homo sapiens)
Other forms of this molecule
3Hyp-4Hyp-GalHyl-COL6A6 [endoplasmic reticulum lumen]
GalHyl-COL6A6 [endoplasmic reticulum lumen]
GlcGalHyl-COL6A6 [endoplasmic reticulum lumen]
4Hyp-GalHyl-COL6A6 [endoplasmic reticulum lumen]
4Hyp-GlcGalHyl-COL6A6 [endoplasmic reticulum lumen]
3Hyp-4Hyp-GlcGalHyl-COL6A6 [endoplasmic reticulum lumen]
COL6A6 [endoplasmic reticulum lumen]
4Hyp-COL6A6 [endoplasmic reticulum lumen]
3Hyp-4Hyp-COL6A6 [endoplasmic reticulum lumen]
4Hyp-5Hyl-COL6A6 [endoplasmic reticulum lumen]
3Hyp-4Hyp-5Hyl-COL6A6 [endoplasmic reticulum lumen]
5Hyl-COL6A6 [endoplasmic reticulum lumen]
3Hyp-4Hyp-COL6A6(?-2263) [extracellular region]
GlcGalHyl-COL6A6(20-?) [extracellular region]
GalHyl-COL6A6(?-2263) [extracellular region]
4Hyp-5Hyl-COL6A6(20-?) [extracellular region]
COL6A6(?-2263) [extracellular region]
3Hyp-4Hyp-GalHyl-COL6A6(20-?) [extracellular region]
4Hyp-GalHyl-COL6A6(20-?) [extracellular region]
4Hyp-GlcGalHyl-COL6A6(?-2263) [extracellular region]
5Hyl-COL6A6(?-2263) [extracellular region]
GlcGalHyl-COL6A6(?-2263) [extracellular region]
COL6A6(20-?) [extracellular region]
GalHyl-COL6A6(20-?) [extracellular region]
4Hyp-GalHyl-COL6A6(?-2263) [extracellular region]
3Hyp-4Hyp-GalHyl-COL6A6(?-2263) [extracellular region]
4Hyp-COL6A6(20-?) [extracellular region]
4Hyp-COL6A6(?-2263) [extracellular region]
3Hyp-4Hyp-GlcGalHyl-COL6A6(?-2263) [extracellular region]
3Hyp-4Hyp-5Hyl-COL6A6(?-2263) [extracellular region]
4Hyp-5Hyl-COL6A6(?-2263) [extracellular region]
4Hyp-GlcGalHyl-COL6A6(20-?) [extracellular region]
3Hyp-4Hyp-GlcGalHyl-COL6A6(20-?) [extracellular region]
GalHyl-COL6A6 [extracellular region]
3Hyp-4Hyp-GalHyl-COL6A6 [extracellular region]
3Hyp-4Hyp-COL6A6 [extracellular region]
4Hyp-COL6A6 [extracellular region]
4Hyp-GlcGalHyl-COL6A6 [extracellular region]
GlcGalHyl-COL6A6 [extracellular region]
3Hyp-4Hyp-GlcGalHyl-COL6A6 [extracellular region]
3Hyp-4Hyp-5Hyl-COL6A6 [extracellular region]
5Hyl-COL6A6 [extracellular region]
4Hyp-5Hyl-COL6A6 [extracellular region]
COL6A6 [extracellular region]
4Hyp-GalHyl-COL6A6 [extracellular region]
Inferred To
5Hyl-COL6A6(20-?) [extracellular region]
(Caenorhabditis elegans)
Col6a6 [extracellular region]
(Mus musculus)
COL6A6 [extracellular region]
(Bos taurus)
COL6A6 [extracellular region]
(Sus scrofa)
Modified Residues
Name
(2S,5R)-5-hydroxylysine at unknown position
PsiMod Name
(2S,5R)-5-hydroxylysine
PsiMod Definition
A protein modification that effectively converts an L-lysine residue to 5-hydroxy-L-lysine.
Cross References
RefSeq
NP_001096078.1
,
XP_005247178.1
,
XP_016861204.1
,
XP_016861202.1
,
XP_011510727.1
,
XP_016861200.1
,
XP_011510730.1
,
XP_016861203.1
,
XP_016861201.1
,
XP_011510728.1
OpenTargets
ENSG00000206384
HPA
ENSG00000206384-COL6A6
GeneCards
A6NMZ7
Ensembl
ENSG00000206384
,
ENST00000358511
,
ENSP00000351310
PRO
A6NMZ7
Pharos - Targets
A6NMZ7
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