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VPS39 [endosome membrane]
Stable Identifier
R-HSA-2197806
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
endosome membrane
Synonyms
Vam6/Vps39-like protein, VPS39_HUMAN
Locations in the PathwayBrowser
Expand all
Disease (Homo sapiens)
Infectious disease (Homo sapiens)
SARS-CoV Infections (Homo sapiens)
SARS-CoV-2 Infection (Homo sapiens)
SARS-CoV-2-host interactions (Homo sapiens)
SARS-CoV-2 modulates autophagy (Homo sapiens)
SARS-CoV-2 3a tetramer binds to VPS39 within HOPS complex (Homo sapiens)
HOPS Complex [endosome membrane] (Homo sapiens)
VPS39 [endosome membrane] (Homo sapiens)
HOPS:3a [endolysosome membrane] (Homo sapiens)
HOPS Complex [endosome membrane] (Homo sapiens)
VPS39 [endosome membrane] (Homo sapiens)
External Reference Information
External Reference
UniProt:Q96JC1 VPS39
Gene Names
VPS39, KIAA0770, TLP, VAM6
Chain
chain:1-886
Reference Genes
BioGPS Gene:23339 VPS39
COSMIC (genes):VPS39 VPS39
CTD Gene:23339 VPS39
dbSNP Gene:23339 VPS39
ENSEMBL:ENSG00000166887.16 VPS39
HGNC:20593 VPS39
KEGG Gene (Homo sapiens):23339 VPS39
Monarch:23339 VPS39
NCBI Gene:23339 VPS39
OMIM:612188 VPS39
UCSC:Q96JC1 VPS39
Reference Transcript
RefSeq:NM_015289.3 VPS39
RefSeq:NM_001301138.1 VPS39
Other Identifiers
0002320048
11739143_a_at
11750666_a_at
11754727_a_at
16807848
212156_PM_at
212156_at
23339
3620458
3620459
3620460
3620461
3620464
3620465
3620466
3620467
3620469
3620471
3620473
3620475
3620477
3620478
3620479
3620480
3620481
3620482
3620484
3620485
3620486
3620487
3620491
3620493
3620494
3620500
3620501
3620502
3620503
3620504
3620506
3620507
3620508
3620509
3620510
3620511
39130_at
7987840
A_23_P100103
A_24_P167825
GE53477
GO:0005515
GO:0005622
GO:0005737
GO:0005764
GO:0005765
GO:0005768
GO:0005770
GO:0005773
GO:0006886
GO:0006914
GO:0008333
GO:0010008
GO:0012505
GO:0015031
GO:0016020
GO:0016192
GO:0030123
GO:0030897
GO:0031410
GO:0031902
GO:0032456
GO:0032991
GO:0034058
GO:0035542
GO:0043226
GO:0043231
GO:0046907
GO:0061024
GO:0061909
GO:0065003
GO:1902501
GO:1902774
HMNXSV003050440
Hs.9452.0.S1_3p_at
Hs.9452.0.S1_3p_x_at
ILMN_1673555
ILMN_1770388
PH_hs_0025072
PH_hs_0040430
TC15001261.hg
Participates
as a component of
HOPS Complex [endosome membrane] (Homo sapiens)
Cross References
RefSeq
NP_056104.2
,
NP_001288067.1
OpenTargets
ENSG00000166887
HPA
ENSG00000166887-VPS39
GeneCards
Q96JC1
Ensembl
ENSP00000326534
,
ENST00000348544
,
ENSG00000166887
,
ENST00000318006
,
ENSP00000335193
PRO
Q96JC1
Pharos - Targets
Q96JC1
HMDB Protein
HMDBP14485
PDB
6ZE9
Interactors (2)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:P0DTC3 3a
9
O-glycosyl 3a [virion membrane]
(R-COV-9694395)
O-glycosyl 3a [endocytic vesicle membrane]
(R-COV-9694729)
O-glycosyl 3a [endoplasmic reticulum-Golgi intermediate compartment membrane]
(R-COV-9694386)
GalNAc-O-3a [endoplasmic reticulum-Golgi intermediate compartment]
(R-COV-9694658)
3a [endoplasmic reticulum-Golgi intermediate compartment]
(R-COV-9694716)
3a [endoplasmic reticulum lumen]
(R-COV-9694584)
O-glycosyl 3a [endolysosome membrane]
(R-COV-9754541)
O-glycosyl 3a [plasma membrane]
(R-COV-9694433)
O-glycosyl 3a [extracellular region]
(R-COV-9694387)
0.954
18
UniProt:P51149 RAB7A
7
RAB7A [secretory granule membrane]
(R-HSA-6804969)
RAB7A [plasma membrane]
(R-HSA-6804990)
RAB7A [cytosol]
(R-HSA-8870415)
RAB7A [phagocytic vesicle membrane]
(R-HSA-9636586)
RAB7A [lysosomal membrane]
(R-HSA-2213231)
GGC-RAB7A [cytosol]
(R-HSA-8870438)
GGC-RAB7A [lysosomal membrane]
(R-HSA-8877454)
0.499
2
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