Reactome | Heparan(2)-SDC4 [Golgi lumen]

Heparan(2)-SDC4 [Golgi lumen]

Stable Identifier

R-HSA-2076446

Type

Protein [EntityWithAccessionedSequence]

Species

Homo sapiens

Compartment

Golgi lumen

Synonyms

SDC4, Syndecan-4, SDC4_HUMAN

Locations in the PathwayBrowser

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External Reference Information

External Reference

UniProt:P31431 SDC4

Gene Names

SDC4

Chain

signal peptide:1-18, chain:19-198

Reference Genes

BioGPS Gene:6385 SDC4

COSMIC (genes):SDC4 SDC4

CTD Gene:6385 SDC4

dbSNP Gene:6385 SDC4

ENSEMBL:ENSG00000124145 SDC4

HGNC:10661 SDC4

KEGG Gene (Homo sapiens):6385 SDC4

Monarch:6385 SDC4

NCBI Gene:6385 SDC4

OMIM:600017 SDC4

UCSC:P31431 SDC4

Reference Transcript

RefSeq:NM_002999.3 SDC4

Other Identifiers

0004590577

11717638_at

11717639_x_at

11749921_a_at

16919567

202071_at

35844_at

3907235

3907236

3907239

3907240

3907242

3907247

3907248

6385

8066513

A_23_P109034

A_24_P373976

D79206_s_at

GE79134

GO:0001523

GO:0001657

GO:0001843

GO:0001968

GO:0002376

GO:0003674

GO:0005080

GO:0005515

GO:0005575

GO:0005576

GO:0005615

GO:0005622

GO:0005737

GO:0005764

GO:0005773

GO:0005794

GO:0005796

GO:0005886

GO:0005887

GO:0005925

GO:0006024

GO:0006027

GO:0006464

GO:0006629

GO:0006810

GO:0006950

GO:0007010

GO:0007155

GO:0008150

GO:0008283

GO:0009056

GO:0009058

GO:0009790

GO:0009986

GO:0010762

GO:0016020

GO:0016021

GO:0016192

GO:0016477

GO:0019899

GO:0022607

GO:0030154

GO:0034330

GO:0040011

GO:0042060

GO:0042130

GO:0042802

GO:0043034

GO:0043202

GO:0043226

GO:0045121

GO:0045860

GO:0048646

GO:0048856

GO:0048870

GO:0050900

GO:0051496

GO:0051894

GO:0060122

GO:0070053

GO:0070062

GO:1903543

GO:1903553

HMNXSV003007882

ILMN_1663042

ILMN_1666181

PH_hs_0029525

TC20000878.hg

g4506860_3p_s_at

Participates

as a member of

Heparan(2)-PGs [Golgi lumen] (Homo sapiens)

Other forms of this molecule

SDC4 [plasma membrane]

SDC4 [lysosomal lumen]

HS(6)-SDC4 [lysosomal lumen]

HS(5)-SDC4 [plasma membrane]

HS(3)-SDC4 [plasma membrane]

HS(1)-SDC4 [plasma membrane]

HS(2)-SDC4 [plasma membrane]

HS(6)-SDC4 [plasma membrane]

HS(4)-SDC4 [plasma membrane]

HS(6)-SDC4 [Golgi lumen]

HS(5)-SDC4 [Golgi lumen]

HS(4)-SDC4 [Golgi lumen]

HS(3)-SDC4 [Golgi lumen]

HS(2)-SDC4 [Golgi lumen]

HS(1)-SDC4 [Golgi lumen]

SDC4 [Golgi lumen]

XylS-SDC4 [Golgi lumen]

Gal-Xyl-SDC4 [Golgi lumen]

Gal-Gal-Xyl-SDC4 [Golgi lumen]

GlcA-Gal-Gal-Xyl-SDC4 [Golgi lumen]

Heparan-SDC4 [Golgi lumen]

Heparan(1)-SDC4 [Golgi lumen]

Heparan(3)-SDC4 [Golgi lumen]

Heparan(4)-SDC4 [Golgi lumen]

Inferred To

Sdc4 [Golgi lumen] (Mus musculus)

Sdc4 [Golgi lumen] (Rattus norvegicus)

sdc4 [Golgi lumen] (Danio rerio)

SDC4 [Golgi lumen] (Bos taurus)

SDC4 [Golgi lumen] (Gallus gallus)

SDC4 [Golgi lumen] (Sus scrofa)

Sdc [Golgi lumen] (Drosophila melanogaster)

sdn-1 [Golgi lumen] (Caenorhabditis elegans)

Modified Residues

Name

O-xylosyl-L-serine (ChEBI:63648) at unknown position

Modification

alpha-D-GlcNAc-(1->4)-beta-D-GlcA-(1->4)-alpha-D-GlcNAc-(1->4)-beta-D-GlcA-(1->3)-beta-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Xyl-yl group

PsiMod Name

O-xylosyl-L-serine

PsiMod Definition

A protein modification that effectively converts an L-serine residue to O3-xylosylserine.

Cross References

RefSeq

NP_002990.2

OpenTargets

ENSG00000124145

GeneCards

P31431

HPA

ENSG00000124145-SDC4

Ensembl

ENSP00000361818, ENSG00000124145, ENST00000372733

PRO

P31431

Pharos - Targets

P31431

GlyGen

P31431

HMDB Protein

HMDBP02435

PDB

1YBO, 1EJP, 1EJQ, 1OBY

Interactors (3)

Accession	#Entities	Entities	Confidence Score	Evidence (IntAct)
UniProt:P0DTC2 S	16	high-mannose N-glycan-PALM-Spike [endoplasmic reticulum lumen] (R-COV-9696917) complex N-glycan-PALM-Spike S1 Fragment [endocytic vesicle membrane] (R-COV-9694745) complex N-glycan-PALM-Spike S1 Fragment [virion membrane] (R-COV-9694638) tri-antennary N-glycan-PALM-Spike [endoplasmic reticulum-Golgi intermediate compartment] (R-COV-9697006) nascent Spike [endoplasmic reticulum lumen] (R-COV-9694796) complex N-glycan-PALM-Spike S2 Fragment [virion membrane] (R-COV-9694791) fully glycosylated Spike [endoplasmic reticulum-Golgi intermediate compartment] (R-COV-9696997) di-antennary N-glycan-PALM-Spike [endoplasmic reticulum-Golgi intermediate compartment] (R-COV-9696920) 14-sugar N-glycan unfolded Spike [endoplasmic reticulum lumen] (R-COV-9694459) high-mannose N-glycan-PALM-Spike [endoplasmic reticulum-Golgi intermediate compartment] (R-COV-9696943) fully glycosylated Spike [endoplasmic reticulum-Golgi intermediate compartment membrane] (R-COV-9698330) complex N-glycan-PALM-Spike S2 Fragment [endocytic vesicle membrane] (R-COV-9694343) Man(9) N-glycan unfolded Spike [endoplasmic reticulum lumen] (R-COV-9696892) high-mannose N-glycan unfolded Spike [endoplasmic reticulum lumen] (R-COV-9696875) fully glycosylated Spike [virion membrane] (R-COV-9698327) high-mannose N-glycan folded Spike [endoplasmic reticulum lumen] (R-COV-9696880)	0.599	17
UniProt:Q01453 PMP22	1	PMP22 [plasma membrane] (R-HSA-9615623)	0.556	3
UniProt:P16871 IL7R	3	IL7R [plasma membrane] (R-HSA-449945) p-Y449-IL7R [plasma membrane] (R-HSA-1295531) IL7R [clathrin-coated endocytic vesicle membrane] (R-HSA-9028500)	0.556	3

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